Wall clock time and date at job start Mon Mar 30 2020 02:39:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46897 * 111.00113 * 2 1 4 4 C 1.52999 * 109.46708 * 66.04832 * 3 2 1 5 5 C 1.53004 * 109.47249 * 179.97438 * 4 3 2 6 6 C 1.50694 * 109.47542 * 179.97438 * 5 4 3 7 7 H 1.08000 * 119.99967 * 0.02562 * 6 5 4 8 8 C 1.37874 * 120.00208 * 179.97438 * 6 5 4 9 9 N 1.31518 * 119.99889 * 0.02562 * 8 6 5 10 10 Si 1.86795 * 120.00123 * 180.02562 * 8 6 5 11 11 H 1.48502 * 109.47294 * 0.02562 * 10 8 6 12 12 H 1.48506 * 109.47264 * 119.99966 * 10 8 6 13 13 H 1.48497 * 109.47189 * 239.99847 * 10 8 6 14 14 C 1.46903 * 110.99734 * 236.04776 * 2 1 3 15 15 H 1.08999 * 110.63213 * 61.57032 * 14 2 1 16 16 C 1.55149 * 110.70387 * 184.67472 * 14 2 1 17 17 C 1.55113 * 101.55872 * 153.91047 * 16 14 2 18 18 N 1.47846 * 104.90467 * 323.15262 * 17 16 14 19 19 C 1.47453 * 108.56534 * 23.97650 * 18 17 16 20 20 H 1.08997 * 109.46865 * 178.28100 * 1 2 3 21 21 H 1.09000 * 109.47189 * 58.28373 * 1 2 3 22 22 H 1.08997 * 109.46781 * 298.28430 * 1 2 3 23 23 H 1.09002 * 109.47146 * 186.04511 * 3 2 1 24 24 H 1.09000 * 109.47407 * 306.04724 * 3 2 1 25 25 H 1.08997 * 109.47451 * 300.00004 * 4 3 2 26 26 H 1.08996 * 109.47544 * 60.00223 * 4 3 2 27 27 H 1.08997 * 109.46985 * 300.00397 * 5 4 3 28 28 H 1.09009 * 109.46822 * 59.99741 * 5 4 3 29 29 H 0.97004 * 119.99791 * 180.02562 * 9 8 6 30 30 H 1.08999 * 110.98634 * 272.13073 * 16 14 2 31 31 H 1.08996 * 110.99321 * 35.94073 * 16 14 2 32 32 H 1.09002 * 110.42238 * 204.24373 * 17 16 14 33 33 H 1.08996 * 110.31481 * 82.01152 * 17 16 14 34 34 H 1.00900 * 111.00323 * 146.24062 * 18 17 16 35 35 H 1.08994 * 109.88936 * 239.60221 * 19 18 17 36 36 H 1.08999 * 109.88565 * 118.41080 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.6315 2.0573 1.3183 5 6 2.1803 3.4855 1.3187 6 6 1.8213 4.1613 2.6169 7 1 1.2584 3.6257 3.3669 8 6 2.2124 5.4632 2.8476 9 7 2.8984 6.1153 1.9344 10 14 1.7680 6.3006 4.4570 11 1 0.9999 5.3583 5.3098 12 1 3.0098 6.7067 5.1632 13 1 0.9418 7.5025 4.1780 14 6 1.9954 -0.7660 -1.1376 15 1 1.6796 -0.3193 -2.0804 16 6 3.5424 -0.8606 -1.0664 17 6 3.8099 -2.1723 -1.8499 18 7 2.6914 -3.0678 -1.4855 19 6 1.5487 -2.2408 -1.0559 20 1 -0.3633 -1.0272 -0.0308 21 1 -0.3633 0.5403 -0.8742 22 1 -0.3633 0.4869 0.9050 23 1 3.0798 1.3443 -0.1082 24 1 1.5612 1.9274 -0.8309 25 1 0.5473 2.0843 1.4266 26 1 2.0658 1.5014 2.1492 27 1 3.2646 3.4581 1.2106 28 1 1.7463 4.0417 0.4877 29 1 3.1739 7.0311 2.0969 30 1 4.0087 -0.0068 -1.5580 31 1 3.8811 -0.9477 -0.0341 32 1 4.7608 -2.6099 -1.5457 33 1 3.8075 -1.9795 -2.9227 34 1 2.4366 -3.6619 -2.2603 35 1 1.2759 -2.4893 -0.0303 36 1 0.6998 -2.4083 -1.7188 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070894402.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:39:21 Heat of formation + Delta-G solvation = -28.979295 kcal Electronic energy + Delta-G solvation = -14230.524018 eV Core-core repulsion = 11940.954455 eV Total energy + Delta-G solvation = -2289.569562 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.42 seconds Orbital eigenvalues (eV) -40.19280 -37.44508 -35.49216 -33.22213 -30.83623 -29.50997 -28.36495 -26.40342 -23.99285 -22.22384 -21.56073 -20.98138 -18.48962 -17.71440 -17.36193 -16.52537 -16.08591 -15.48280 -15.08933 -14.79937 -14.31663 -14.00389 -13.72388 -13.54807 -13.47771 -13.00892 -12.85574 -12.68421 -12.50775 -12.22206 -12.09884 -11.93716 -11.80278 -11.41705 -11.33292 -11.07145 -10.56071 -9.44631 -9.26695 -8.20831 -6.31829 1.39811 1.40271 1.53980 2.40684 2.87142 3.12405 3.32579 3.59072 3.90176 4.08245 4.14747 4.27007 4.36982 4.40350 4.54794 4.56893 4.68892 4.73566 4.89012 4.90343 4.98850 5.02520 5.03475 5.12666 5.19066 5.25631 5.51861 5.72810 5.84779 5.85576 6.05119 6.18816 6.27149 6.50794 6.84940 7.37568 8.91425 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.062257 B = 0.005271 C = 0.005051 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 449.637066 B = 5310.961996 C = 5542.270618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.021 3.979 2 N -0.539 5.539 3 C 0.068 3.932 4 C -0.089 4.089 5 C 0.026 3.974 6 C -0.542 4.542 7 H 0.058 0.942 8 C -0.001 4.001 9 N -0.934 5.934 10 Si 0.966 3.034 11 H -0.262 1.262 12 H -0.277 1.277 13 H -0.277 1.277 14 C 0.057 3.943 15 H 0.045 0.955 16 C -0.126 4.126 17 C 0.052 3.948 18 N -0.690 5.690 19 C 0.062 3.938 20 H 0.086 0.914 21 H 0.024 0.976 22 H 0.065 0.935 23 H 0.068 0.932 24 H 0.022 0.978 25 H 0.051 0.949 26 H 0.050 0.950 27 H -0.009 1.009 28 H -0.010 1.010 29 H 0.264 0.736 30 H 0.072 0.928 31 H 0.068 0.932 32 H 0.085 0.915 33 H 0.057 0.943 34 H 0.350 0.650 35 H 0.074 0.926 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.347 -15.860 -8.148 17.985 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 N -0.263 5.263 3 C -0.060 4.060 4 C -0.127 4.127 5 C -0.012 4.012 6 C -0.580 4.580 7 H 0.077 0.923 8 C -0.198 4.198 9 N -0.575 5.575 10 Si 0.790 3.210 11 H -0.186 1.186 12 H -0.203 1.203 13 H -0.202 1.202 14 C -0.052 4.052 15 H 0.063 0.937 16 C -0.165 4.165 17 C -0.077 4.077 18 N -0.321 5.321 19 C -0.068 4.068 20 H 0.105 0.895 21 H 0.042 0.958 22 H 0.083 0.917 23 H 0.086 0.914 24 H 0.040 0.960 25 H 0.069 0.931 26 H 0.069 0.931 27 H 0.010 0.990 28 H 0.008 0.992 29 H 0.072 0.928 30 H 0.091 0.909 31 H 0.087 0.913 32 H 0.104 0.896 33 H 0.075 0.925 34 H 0.167 0.833 35 H 0.092 0.908 36 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges -1.889 -16.103 -7.107 17.703 hybrid contribution -0.598 1.724 -0.906 2.037 sum -2.487 -14.379 -8.012 16.647 Atomic orbital electron populations 1.22468 0.86753 1.02584 1.00855 1.62099 1.08628 1.13364 1.42215 1.22036 0.99686 0.87470 0.96809 1.21386 0.99813 0.95266 0.96210 1.18973 0.94649 0.92135 0.95417 1.21710 1.34889 0.98365 1.03029 0.92329 1.25987 0.94900 0.98260 1.00680 1.70107 1.39348 1.11796 1.36205 0.85383 0.78176 0.78327 0.79073 1.18634 1.20280 1.20244 1.22961 0.95800 0.94873 0.91570 0.93729 1.22815 0.94266 0.97987 1.01400 1.22814 0.95573 0.91266 0.98050 1.61821 1.06934 1.21570 1.41792 1.22553 0.92925 0.89485 1.01788 0.89546 0.95781 0.91673 0.91374 0.95979 0.93075 0.93124 0.99018 0.99200 0.92752 0.90929 0.91275 0.89644 0.92480 0.83294 0.90769 0.91576 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.56 9.11 127.69 1.16 1.72 16 2 N -0.54 -16.19 4.59 -890.11 -4.08 -20.27 16 3 C 0.07 2.44 4.83 86.30 0.42 2.86 16 4 C -0.09 -3.84 5.08 30.60 0.16 -3.68 16 5 C 0.03 1.41 4.97 29.85 0.15 1.56 16 6 C -0.54 -31.71 9.11 25.60 0.23 -31.48 16 7 H 0.06 3.31 7.74 -2.91 -0.02 3.29 16 8 C 0.00 -0.04 5.46 84.65 0.46 0.42 16 9 N -0.93 -57.72 13.29 21.45 0.28 -57.43 16 10 Si 0.97 44.97 29.54 68.60 2.03 47.00 16 11 H -0.26 -11.68 7.11 99.48 0.71 -10.98 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 H -0.28 -12.48 7.11 99.48 0.71 -11.77 16 14 C 0.06 1.43 2.63 46.10 0.12 1.55 16 15 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 16 C -0.13 -3.06 5.40 32.05 0.17 -2.89 16 17 C 0.05 0.98 7.58 86.85 0.66 1.64 16 18 N -0.69 -13.28 7.39 -504.04 -3.73 -17.00 16 19 C 0.06 1.29 6.07 86.64 0.53 1.82 16 20 H 0.09 1.84 6.82 -2.39 -0.02 1.82 16 21 H 0.02 0.61 8.13 -2.39 -0.02 0.60 16 22 H 0.06 1.86 6.55 -2.39 -0.02 1.84 16 23 H 0.07 2.48 6.68 -2.39 -0.02 2.46 16 24 H 0.02 0.81 8.11 -2.39 -0.02 0.79 16 25 H 0.05 2.15 6.59 -2.39 -0.02 2.13 16 26 H 0.05 2.22 8.14 -2.39 -0.02 2.20 16 27 H -0.01 -0.50 8.14 -2.39 -0.02 -0.52 16 28 H -0.01 -0.61 8.14 -2.38 -0.02 -0.62 16 29 H 0.26 15.20 8.31 -92.71 -0.77 14.43 16 30 H 0.07 1.73 7.86 -2.39 -0.02 1.71 16 31 H 0.07 1.94 8.14 -2.39 -0.02 1.92 16 32 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 33 H 0.06 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.35 5.01 8.91 -89.69 -0.80 4.21 16 35 H 0.07 1.76 7.70 -2.39 -0.02 1.75 16 36 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 Total: -1.00 -64.99 284.89 -1.21 -66.20 By element: Atomic # 1 Polarization: 7.77 SS G_CDS: 0.23 Total: 8.00 kcal Atomic # 6 Polarization: -30.54 SS G_CDS: 4.06 Total: -26.49 kcal Atomic # 7 Polarization: -87.19 SS G_CDS: -7.52 Total: -94.71 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -64.99 -1.21 -66.20 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070894402.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 37.220 kcal (2) G-P(sol) polarization free energy of solvation -64.992 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.772 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.207 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.199 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.42 seconds