Wall clock time and date at job start Mon Mar 30 2020 02:30:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46901 * 109.46939 * 2 1 4 4 C 1.46897 * 110.99886 * 284.36952 * 3 2 1 5 5 H 1.09003 * 109.47084 * 195.59418 * 4 3 2 6 6 C 1.53000 * 109.47403 * 315.59372 * 4 3 2 7 7 C 1.50699 * 109.47362 * 75.59406 * 4 3 2 8 8 H 1.08007 * 119.99565 * 0.08118 * 7 4 3 9 9 C 1.37877 * 120.00216 * 180.02562 * 7 4 3 10 10 N 1.31513 * 119.99637 * 0.02562 * 9 7 4 11 11 Si 1.86801 * 119.99967 * 179.97438 * 9 7 4 12 12 H 1.48506 * 109.46889 * 60.00223 * 11 9 7 13 13 H 1.48494 * 109.46880 * 179.97438 * 11 9 7 14 14 H 1.48493 * 109.47547 * 300.00313 * 11 9 7 15 15 C 1.46903 * 110.99637 * 160.41393 * 3 2 1 16 16 H 1.08998 * 110.26916 * 65.85052 * 15 3 2 17 17 C 1.54587 * 110.30952 * 303.75720 * 15 3 2 18 18 C 1.55104 * 102.84692 * 219.18250 * 17 15 3 19 19 N 1.48537 * 103.27790 * 37.31149 * 18 17 15 20 20 C 1.47901 * 105.82191 * 320.84221 * 19 18 17 21 21 H 1.09005 * 109.47120 * 309.62876 * 1 2 3 22 22 H 1.08999 * 109.47119 * 69.62867 * 1 2 3 23 23 H 1.09005 * 109.47131 * 189.62433 * 1 2 3 24 24 H 1.08994 * 109.46737 * 240.00066 * 2 1 3 25 25 H 1.09000 * 109.46976 * 119.99931 * 2 1 3 26 26 H 1.08999 * 109.46965 * 309.22617 * 6 4 3 27 27 H 1.09003 * 109.46764 * 69.22197 * 6 4 3 28 28 H 1.09001 * 109.47289 * 189.22542 * 6 4 3 29 29 H 0.97003 * 119.99356 * 180.02562 * 10 9 7 30 30 H 1.08997 * 110.73078 * 337.48573 * 17 15 3 31 31 H 1.09001 * 110.72434 * 100.76944 * 17 15 3 32 32 H 1.09000 * 110.59781 * 278.88157 * 18 17 15 33 33 H 1.08993 * 110.83086 * 155.84925 * 18 17 15 34 34 H 1.00889 * 111.00307 * 81.36140 * 19 18 17 35 35 H 1.08997 * 109.91802 * 265.98343 * 20 19 18 36 36 H 1.08994 * 110.08436 * 144.77923 * 20 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.8743 1.9948 -1.3285 5 1 2.4816 2.8983 -1.3820 6 6 2.3386 1.0041 -2.3980 7 6 0.4281 2.3470 -1.5640 8 1 -0.3091 2.1398 -0.8023 9 6 0.0461 2.9346 -2.7514 10 7 0.9439 3.1873 -3.6786 11 14 -1.7467 3.3705 -3.0436 12 1 -2.1977 4.3323 -2.0059 13 1 -1.8936 3.9870 -4.3865 14 1 -2.5738 2.1394 -2.9703 15 6 3.4134 1.4506 0.4598 16 1 4.0695 0.9480 -0.2508 17 6 3.5472 0.8095 1.8600 18 6 4.5518 1.7501 2.5754 19 7 4.1749 3.0965 2.0740 20 6 3.8472 2.9168 0.6430 21 1 -0.3633 0.6555 0.7915 22 1 -0.3633 0.3577 -0.9634 23 1 -0.3634 -1.0132 0.1718 24 1 1.8933 -0.5138 -0.8900 25 1 1.8934 -0.5138 0.8900 26 1 3.3263 0.6241 -2.1370 27 1 1.6337 0.1746 -2.4554 28 1 2.3865 1.5077 -3.3635 29 1 0.6752 3.6011 -4.5138 30 1 2.5873 0.8065 2.3763 31 1 3.9490 -0.2010 1.7848 32 1 5.5752 1.5060 2.2904 33 1 4.4315 1.6949 3.6573 34 1 3.3847 3.4636 2.5826 35 1 4.7259 3.1231 0.0321 36 1 3.0329 3.5833 0.3590 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000070900415.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:30:19 Heat of formation + Delta-G solvation = -5.446438 kcal Electronic energy + Delta-G solvation = -15296.008542 eV Core-core repulsion = 13007.459441 eV Total energy + Delta-G solvation = -2288.549101 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.40083 -37.66105 -34.60867 -31.81956 -31.16030 -29.77326 -27.48832 -27.32031 -24.03660 -22.27219 -21.96653 -19.86618 -18.51409 -17.51011 -17.00517 -16.35045 -16.06523 -15.35072 -14.82091 -14.58648 -14.13408 -13.57838 -13.47719 -13.31351 -12.93551 -12.86774 -12.65643 -12.52992 -12.28557 -12.23730 -12.17850 -11.84089 -11.74498 -11.54885 -11.09449 -10.76421 -10.38462 -9.57247 -8.81734 -8.05103 -6.11137 1.43688 1.44490 1.51510 2.45384 3.24245 3.25585 3.43888 3.81597 4.10851 4.27217 4.37123 4.46550 4.60435 4.68533 4.73101 4.79670 4.80917 4.90183 4.97279 5.00160 5.07042 5.07898 5.20716 5.23844 5.36120 5.53637 5.66418 5.76503 5.83903 5.89252 6.30764 6.45756 6.57296 6.82036 6.99798 7.55162 9.01466 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.037675 B = 0.009685 C = 0.009026 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 743.020019 B = 2890.508643 C = 3101.302876 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.054 3.946 3 N -0.528 5.528 4 C 0.213 3.787 5 H 0.010 0.990 6 C -0.148 4.148 7 C -0.500 4.500 8 H 0.070 0.930 9 C 0.007 3.993 10 N -0.925 5.925 11 Si 0.950 3.050 12 H -0.274 1.274 13 H -0.290 1.290 14 H -0.272 1.272 15 C 0.049 3.951 16 H 0.025 0.975 17 C -0.139 4.139 18 C 0.048 3.952 19 N -0.675 5.675 20 C 0.056 3.944 21 H 0.047 0.953 22 H 0.054 0.946 23 H 0.059 0.941 24 H 0.025 0.975 25 H 0.075 0.925 26 H 0.017 0.983 27 H 0.033 0.967 28 H 0.053 0.947 29 H 0.257 0.743 30 H 0.074 0.926 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.097 0.903 34 H 0.342 0.658 35 H 0.061 0.939 36 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.596 -5.370 9.899 11.822 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.074 4.074 3 N -0.252 5.252 4 C 0.106 3.894 5 H 0.028 0.972 6 C -0.208 4.208 7 C -0.539 4.539 8 H 0.088 0.912 9 C -0.191 4.191 10 N -0.566 5.566 11 Si 0.777 3.223 12 H -0.200 1.200 13 H -0.216 1.216 14 H -0.197 1.197 15 C -0.061 4.061 16 H 0.043 0.957 17 C -0.179 4.179 18 C -0.082 4.082 19 N -0.302 5.302 20 C -0.074 4.074 21 H 0.066 0.934 22 H 0.072 0.928 23 H 0.078 0.922 24 H 0.043 0.957 25 H 0.093 0.907 26 H 0.036 0.964 27 H 0.052 0.948 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.093 0.907 31 H 0.099 0.901 32 H 0.099 0.901 33 H 0.115 0.885 34 H 0.157 0.843 35 H 0.080 0.920 36 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.010 -4.731 9.977 11.747 hybrid contribution -1.230 -0.494 -1.447 1.963 sum 2.780 -5.225 8.530 10.382 Atomic orbital electron populations 1.21895 0.95389 1.00093 1.02371 1.22040 0.96415 0.89292 0.99623 1.62529 1.17261 1.17598 1.27843 1.19099 0.95668 0.91689 0.82931 0.97211 1.22132 0.96238 0.99514 1.02872 1.21558 0.94011 1.37724 1.00583 0.91221 1.25664 1.00836 0.96253 0.96308 1.70042 1.34629 1.44575 1.07316 0.85726 0.81231 0.78522 0.76833 1.19965 1.21572 1.19676 1.22925 0.89860 0.96704 0.96625 0.95693 1.23165 1.00660 0.99928 0.94108 1.23163 0.98650 0.86391 0.99969 1.62764 1.40686 1.24301 1.02470 1.22594 0.98928 0.95290 0.90611 0.93387 0.92752 0.92238 0.95710 0.90685 0.96391 0.94802 0.92817 0.93376 0.90733 0.90135 0.90113 0.88503 0.84288 0.92024 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.16 8.62 71.98 0.62 -4.54 16 2 C 0.05 1.99 5.13 86.31 0.44 2.43 16 3 N -0.53 -21.58 4.18 -845.16 -3.53 -25.11 16 4 C 0.21 10.55 2.00 44.17 0.09 10.64 16 5 H 0.01 0.55 6.30 -2.39 -0.02 0.54 16 6 C -0.15 -7.23 7.59 71.98 0.55 -6.68 16 7 C -0.50 -26.71 6.73 25.60 0.17 -26.54 16 8 H 0.07 3.68 5.67 -2.91 -0.02 3.66 16 9 C 0.01 0.39 5.30 84.65 0.45 0.84 16 10 N -0.92 -53.36 11.43 21.45 0.25 -53.11 16 11 Si 0.95 43.77 29.54 68.60 2.03 45.80 16 12 H -0.27 -12.39 7.11 99.48 0.71 -11.69 16 13 H -0.29 -13.29 7.11 99.48 0.71 -12.58 16 14 H -0.27 -12.11 7.11 99.48 0.71 -11.40 16 15 C 0.05 1.73 2.61 45.79 0.12 1.85 16 16 H 0.03 0.94 6.98 -2.39 -0.02 0.92 16 17 C -0.14 -3.70 5.17 31.86 0.16 -3.53 16 18 C 0.05 1.11 7.55 86.71 0.65 1.77 16 19 N -0.68 -19.49 7.51 -501.90 -3.77 -23.26 16 20 C 0.06 1.99 6.46 86.45 0.56 2.55 16 21 H 0.05 1.77 7.99 -2.38 -0.02 1.75 16 22 H 0.05 2.35 5.65 -2.39 -0.01 2.34 16 23 H 0.06 1.81 8.14 -2.38 -0.02 1.79 16 24 H 0.02 0.97 5.43 -2.39 -0.01 0.96 16 25 H 0.07 2.33 6.22 -2.39 -0.01 2.32 16 26 H 0.02 0.78 6.92 -2.39 -0.02 0.76 16 27 H 0.03 1.62 6.62 -2.39 -0.02 1.60 16 28 H 0.05 2.91 6.37 -2.39 -0.02 2.89 16 29 H 0.26 14.32 8.31 -92.71 -0.77 13.55 16 30 H 0.07 2.04 7.63 -2.39 -0.02 2.03 16 31 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 32 H 0.08 1.80 8.14 -2.39 -0.02 1.78 16 33 H 0.10 1.77 8.14 -2.39 -0.02 1.76 16 34 H 0.34 9.36 8.92 -89.70 -0.80 8.56 16 35 H 0.06 2.22 8.14 -2.39 -0.02 2.20 16 36 H 0.06 2.31 6.81 -2.39 -0.02 2.29 16 Total: -1.00 -58.07 267.64 -0.95 -59.02 By element: Atomic # 1 Polarization: 17.61 SS G_CDS: 0.26 Total: 17.87 kcal Atomic # 6 Polarization: -25.02 SS G_CDS: 3.82 Total: -21.20 kcal Atomic # 7 Polarization: -94.43 SS G_CDS: -7.05 Total: -101.48 kcal Atomic # 14 Polarization: 43.77 SS G_CDS: 2.03 Total: 45.80 kcal Total: -58.07 -0.95 -59.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000070900415.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.574 kcal (2) G-P(sol) polarization free energy of solvation -58.071 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.949 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.021 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds