Wall clock time and date at job start Mon Mar 30 2020 02:46:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45198 * 1 3 3 C 1.34770 * 116.99927 * 2 1 4 4 O 1.21520 * 120.00057 * 359.97438 * 3 2 1 5 5 C 1.47421 * 119.99765 * 180.02562 * 3 2 1 6 6 C 1.37402 * 122.53895 * 179.97438 * 5 3 2 7 7 S 1.71002 * 109.05001 * 179.97438 * 6 5 3 8 8 C 1.75963 * 90.67303 * 0.02562 * 7 6 5 9 9 C 1.40110 * 125.24361 * 180.02562 * 8 7 6 10 10 H 1.08002 * 120.00483 * 180.02562 * 9 8 7 11 11 C 1.40256 * 119.99998 * 0.02562 * 9 8 7 12 12 N 1.30674 * 119.99898 * 0.02562 * 11 9 8 13 13 Si 1.86798 * 120.00433 * 180.02562 * 11 9 8 14 14 H 1.48493 * 109.47326 * 270.00675 * 13 11 9 15 15 H 1.48506 * 109.46545 * 30.00425 * 13 11 9 16 16 H 1.48498 * 109.47210 * 150.00136 * 13 11 9 17 17 N 1.31252 * 109.51615 * 0.25948 * 8 7 6 18 18 H 1.08999 * 109.46941 * 299.99850 * 1 2 3 19 19 H 1.08999 * 109.47090 * 60.00536 * 1 2 3 20 20 H 1.09000 * 109.47126 * 180.02562 * 1 2 3 21 21 H 1.08007 * 125.47490 * 359.97438 * 6 5 3 22 22 H 0.96996 * 120.00331 * 179.97438 * 12 11 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4520 0.0000 0.0000 3 6 2.0638 1.2008 0.0000 4 8 1.4020 2.2200 -0.0005 5 6 3.5360 1.2779 -0.0006 6 6 4.2134 2.4733 -0.0011 7 16 5.8949 2.1620 -0.0009 8 6 5.5948 0.4281 -0.0009 9 6 6.5845 -0.5637 -0.0003 10 1 6.3040 -1.6066 -0.0008 11 6 7.9397 -0.2021 0.0009 12 7 8.2792 1.0598 0.0020 13 14 9.2592 -1.5243 0.0010 14 1 9.6078 -1.8757 1.4011 15 1 8.7511 -2.7306 -0.7003 16 1 10.4676 -1.0177 -0.6977 17 7 4.3011 0.2070 -0.0067 18 1 -0.3633 0.5138 0.8900 19 1 -0.3633 0.5137 -0.8900 20 1 -0.3633 -1.0277 0.0005 21 1 3.7573 3.4523 -0.0016 22 1 9.2164 1.3099 0.0032 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000076561389.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:46:56 Heat of formation + Delta-G solvation = -88.130598 kcal Electronic energy + Delta-G solvation = -11571.822375 eV Core-core repulsion = 9217.222745 eV Total energy + Delta-G solvation = -2354.599630 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.025 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -41.42862 -39.24302 -37.43257 -36.00705 -31.56294 -28.92216 -28.41631 -25.71993 -23.09726 -20.73520 -19.81522 -18.73697 -17.66291 -17.37816 -17.00163 -16.68566 -15.29525 -14.92612 -14.52384 -14.26838 -14.02374 -13.63344 -12.97851 -12.93954 -12.52133 -12.22233 -11.99823 -11.79634 -11.48359 -11.41077 -10.11478 -9.97424 -9.42288 -8.96618 -6.82083 0.03101 0.98951 1.29135 1.42516 1.50220 1.60929 1.64017 2.09777 2.22692 2.35871 3.10566 3.73108 4.29528 4.31607 4.55858 4.65220 4.86014 4.94801 5.17931 5.26978 5.88323 6.22805 6.34261 6.67061 7.53797 7.97649 Molecular weight = 213.02amu Principal moments of inertia in cm(-1) A = 0.055194 B = 0.008759 C = 0.007590 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 507.178943 B = 3195.986040 C = 3688.019140 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.025 3.975 2 O -0.352 6.352 3 C 0.546 3.454 4 O -0.536 6.536 5 C 0.046 3.954 6 C -0.397 4.397 7 S 0.164 5.836 8 C 0.161 3.839 9 C -0.389 4.389 10 H 0.109 0.891 11 C 0.023 3.977 12 N -0.797 5.797 13 Si 1.022 2.978 14 H -0.256 1.256 15 H -0.255 1.255 16 H -0.257 1.257 17 N -0.594 5.594 18 H 0.065 0.935 19 H 0.065 0.935 20 H 0.135 0.865 21 H 0.156 0.844 22 H 0.317 0.683 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.396 -2.776 0.016 2.805 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.267 6.267 3 C 0.391 3.609 4 O -0.428 6.428 5 C -0.094 4.094 6 C -0.545 4.545 7 S 0.425 5.575 8 C -0.092 4.092 9 C -0.432 4.432 10 H 0.127 0.873 11 C -0.198 4.198 12 N -0.426 5.426 13 Si 0.839 3.161 14 H -0.180 1.180 15 H -0.178 1.178 16 H -0.181 1.181 17 N -0.318 5.318 18 H 0.084 0.916 19 H 0.084 0.916 20 H 0.153 0.847 21 H 0.174 0.826 22 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 0.264 -2.177 0.004 2.193 hybrid contribution -1.023 0.001 0.012 1.023 sum -0.760 -2.176 0.016 2.305 Atomic orbital electron populations 1.23641 0.74564 1.05897 1.02701 1.86725 1.25100 1.31518 1.83403 1.20572 0.87702 0.81359 0.71311 1.90711 1.66602 1.36742 1.48738 1.19376 0.91237 0.89838 1.08914 1.26929 1.03652 1.01039 1.22848 1.84087 0.96485 1.05944 1.70963 1.24348 0.91901 0.95387 0.97525 1.19493 0.89502 0.94736 1.39506 0.87340 1.27239 1.01797 0.99747 0.91007 1.68610 1.23184 1.19160 1.31663 0.84560 0.74824 0.76589 0.80107 1.18004 1.17808 1.18059 1.67384 1.02768 1.29432 1.32230 0.91640 0.91640 0.84697 0.82604 0.86910 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.71 10.57 113.37 1.20 1.91 14 2 O -0.35 -14.86 10.48 -56.81 -0.60 -15.46 14 3 C 0.55 26.23 7.95 70.24 0.56 26.79 14 4 O -0.54 -25.74 16.49 19.77 0.33 -25.42 14 5 C 0.05 2.44 6.70 41.40 0.28 2.72 14 6 C -0.40 -20.11 10.67 67.62 0.72 -19.39 14 7 S 0.16 8.17 20.12 -56.49 -1.14 7.03 14 8 C 0.16 8.76 7.11 85.23 0.61 9.37 14 9 C -0.39 -19.46 9.46 23.22 0.22 -19.24 14 10 H 0.11 5.24 7.85 -2.91 -0.02 5.22 14 11 C 0.02 0.98 5.50 85.36 0.47 1.45 14 12 N -0.80 -35.39 10.64 21.88 0.23 -35.16 14 13 Si 1.02 32.15 29.56 68.60 2.03 34.18 14 14 H -0.26 -7.76 7.11 99.48 0.71 -7.05 14 15 H -0.25 -7.95 7.11 99.48 0.71 -7.24 14 16 H -0.26 -7.45 7.11 99.48 0.71 -6.74 14 17 N -0.59 -33.24 10.58 -184.38 -1.95 -35.19 14 18 H 0.06 1.76 8.14 -2.39 -0.02 1.74 14 19 H 0.06 1.76 8.14 -2.39 -0.02 1.74 14 20 H 0.13 2.75 8.14 -2.39 -0.02 2.73 14 21 H 0.16 7.36 8.03 -2.91 -0.02 7.34 14 22 H 0.32 12.18 8.29 -92.71 -0.77 11.41 14 Total: -1.00 -61.47 225.72 4.20 -57.26 By element: Atomic # 1 Polarization: 7.90 SS G_CDS: 1.25 Total: 9.15 kcal Atomic # 6 Polarization: -0.45 SS G_CDS: 4.05 Total: 3.60 kcal Atomic # 7 Polarization: -68.63 SS G_CDS: -1.72 Total: -70.35 kcal Atomic # 8 Polarization: -40.61 SS G_CDS: -0.27 Total: -40.87 kcal Atomic # 14 Polarization: 32.15 SS G_CDS: 2.03 Total: 34.18 kcal Atomic # 16 Polarization: 8.17 SS G_CDS: -1.14 Total: 7.03 kcal Total: -61.47 4.20 -57.26 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000076561389.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -30.866 kcal (2) G-P(sol) polarization free energy of solvation -61.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -92.333 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.202 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -88.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds