Wall clock time and date at job start Mon Mar 30 2020 02:48:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31668 * 1 3 3 Si 1.86800 * 119.99879 * 2 1 4 4 H 1.48500 * 109.46893 * 269.99694 * 3 2 1 5 5 H 1.48498 * 109.47385 * 29.99667 * 3 2 1 6 6 H 1.48496 * 109.47237 * 150.00017 * 3 2 1 7 7 C 1.38659 * 120.00013 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00060 * 180.02562 * 7 2 1 9 9 S 1.76205 * 119.99925 * 0.02562 * 7 2 1 10 10 C 1.76205 * 99.99959 * 185.66176 * 9 7 2 11 11 C 1.38970 * 120.10989 * 6.88463 * 10 9 7 12 12 C 1.38280 * 119.95644 * 179.97438 * 11 10 9 13 13 F 1.35106 * 119.90875 * 180.02562 * 12 11 10 14 14 C 1.38574 * 120.18654 * 0.02562 * 12 11 10 15 15 C 1.38251 * 120.22179 * 0.02562 * 14 12 11 16 16 C 1.38673 * 120.03625 * 0.25707 * 15 14 12 17 17 N 1.39858 * 120.08883 * 179.72302 * 16 15 14 18 18 H 0.97005 * 120.00221 * 0.02562 * 1 2 3 19 19 H 1.08000 * 120.02296 * 0.03033 * 11 10 9 20 20 H 1.08001 * 119.88937 * 180.02562 * 14 12 11 21 21 H 1.07998 * 119.97649 * 179.97438 * 15 14 12 22 22 H 0.97006 * 120.00611 * 0.02562 * 17 16 15 23 23 H 0.97005 * 120.00405 * 180.02562 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3167 0.0000 0.0000 3 14 2.2506 1.6178 0.0000 4 1 2.4982 2.0464 -1.4001 5 1 1.4481 2.6527 0.6999 6 1 3.5482 1.4402 0.7000 7 6 2.0100 -1.2008 0.0005 8 1 3.0900 -1.2008 0.0010 9 16 1.1289 -2.7268 0.0005 10 6 2.4713 -3.8551 0.1725 11 6 3.7564 -3.3796 0.4045 12 6 4.8075 -4.2680 0.5395 13 9 6.0563 -3.8047 0.7655 14 6 4.5835 -5.6322 0.4436 15 6 3.3083 -6.1134 0.2119 16 6 2.2485 -5.2305 0.0692 17 7 0.9590 -5.7159 -0.1710 18 1 -0.4851 0.8401 -0.0004 19 1 3.9339 -2.3170 0.4802 20 1 5.4078 -6.3217 0.5502 21 1 3.1383 -7.1773 0.1374 22 1 0.8049 -6.6714 -0.2376 23 1 0.2186 -5.0972 -0.2709 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000083824792.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:48:28 Heat of formation + Delta-G solvation = -48.247294 kcal Electronic energy + Delta-G solvation = -11482.296566 eV Core-core repulsion = 9141.799195 eV Total energy + Delta-G solvation = -2340.497370 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.032 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -49.62696 -39.80495 -35.16888 -34.65786 -32.04119 -28.92480 -27.85808 -24.10380 -23.03316 -20.11819 -18.47617 -17.98277 -17.72736 -17.00368 -16.37713 -16.21143 -15.85295 -14.87833 -14.70762 -14.03577 -13.82830 -13.63722 -13.27309 -13.00940 -12.89210 -12.11155 -11.44775 -11.44035 -11.20773 -10.69846 -10.44225 -8.87873 -8.51267 -8.06185 -6.22848 0.37473 0.55238 1.26643 1.35876 1.43708 1.61649 2.16361 2.77300 2.90782 2.94854 3.28121 3.64918 3.99330 4.24313 4.56567 4.72950 5.05740 5.23298 5.33896 5.39021 5.48040 6.01259 6.11725 6.59384 6.94211 7.10157 8.57528 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.033707 B = 0.010965 C = 0.008313 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 830.498501 B = 2553.033455 C = 3367.600232 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.900 5.900 2 C 0.028 3.972 3 Si 0.989 3.011 4 H -0.266 1.266 5 H -0.270 1.270 6 H -0.266 1.266 7 C -0.567 4.567 8 H 0.088 0.912 9 S -0.008 6.008 10 C -0.154 4.154 11 C -0.154 4.154 12 C 0.032 3.968 13 F -0.158 7.158 14 C -0.122 4.122 15 C -0.151 4.151 16 C 0.203 3.797 17 N -0.862 5.862 18 H 0.277 0.723 19 H 0.119 0.881 20 H 0.161 0.839 21 H 0.169 0.831 22 H 0.413 0.587 23 H 0.398 0.602 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.364 -10.273 0.029 11.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.535 5.535 2 C -0.178 4.178 3 Si 0.811 3.189 4 H -0.191 1.191 5 H -0.194 1.194 6 H -0.191 1.191 7 C -0.714 4.714 8 H 0.106 0.894 9 S 0.243 5.757 10 C -0.273 4.273 11 C -0.181 4.181 12 C 0.009 3.991 13 F -0.137 7.137 14 C -0.146 4.146 15 C -0.176 4.176 16 C 0.092 3.908 17 N -0.403 5.403 18 H 0.086 0.914 19 H 0.137 0.863 20 H 0.178 0.822 21 H 0.187 0.813 22 H 0.244 0.756 23 H 0.227 0.773 Dipole moment (debyes) X Y Z Total from point charges 2.887 -10.166 -0.075 10.568 hybrid contribution 1.487 1.527 0.113 2.134 sum 4.375 -8.639 0.038 9.684 Atomic orbital electron populations 1.70097 1.07384 1.29190 1.46841 1.25973 0.96018 1.02904 0.92937 0.85081 0.78291 0.76521 0.79041 1.19089 1.19427 1.19066 1.23571 0.96067 0.92147 1.59583 0.89401 1.82793 1.07950 0.97951 1.87027 1.21965 0.98761 0.96839 1.09726 1.21097 0.92118 1.00103 1.04800 1.17576 0.78674 0.93425 1.09413 1.91385 1.39349 1.89896 1.93118 1.21021 0.98890 0.92174 1.02484 1.20623 0.90006 0.99978 1.06965 1.17582 0.87704 0.89766 0.95789 1.42387 1.05461 1.10522 1.81958 0.91396 0.86325 0.82153 0.81346 0.75604 0.77270 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -51.57 13.22 21.62 0.29 -51.28 14 2 C 0.03 1.54 5.49 84.82 0.47 2.01 14 3 Si 0.99 43.19 29.55 68.60 2.03 45.21 14 4 H -0.27 -11.19 7.11 99.48 0.71 -10.48 14 5 H -0.27 -11.22 7.11 99.48 0.71 -10.52 14 6 H -0.27 -11.43 7.11 99.48 0.71 -10.72 14 7 C -0.57 -31.91 8.99 67.92 0.61 -31.30 14 8 H 0.09 4.89 4.97 -2.91 -0.01 4.87 14 9 S -0.01 -0.39 20.18 -56.49 -1.14 -1.53 14 10 C -0.15 -6.82 6.12 22.80 0.14 -6.68 14 11 C -0.15 -6.87 9.20 22.46 0.21 -6.67 14 12 C 0.03 1.21 7.29 22.36 0.16 1.37 14 13 F -0.16 -6.01 17.26 44.97 0.78 -5.24 14 14 C -0.12 -3.64 10.02 22.35 0.22 -3.42 14 15 C -0.15 -4.19 9.89 22.38 0.22 -3.97 14 16 C 0.20 7.06 6.77 38.32 0.26 7.32 14 17 N -0.86 -24.37 9.04 -50.90 -0.46 -24.83 14 18 H 0.28 14.70 8.31 -92.70 -0.77 13.93 14 19 H 0.12 5.84 5.03 -2.91 -0.01 5.82 14 20 H 0.16 3.56 8.06 -2.91 -0.02 3.53 14 21 H 0.17 3.13 8.06 -2.91 -0.02 3.10 14 22 H 0.41 8.07 8.84 -92.70 -0.82 7.25 14 23 H 0.40 12.42 7.38 -92.70 -0.68 11.74 14 Total: -1.00 -64.03 224.98 3.55 -60.48 By element: Atomic # 1 Polarization: 18.76 SS G_CDS: -0.23 Total: 18.53 kcal Atomic # 6 Polarization: -43.63 SS G_CDS: 2.29 Total: -41.34 kcal Atomic # 7 Polarization: -75.94 SS G_CDS: -0.17 Total: -76.12 kcal Atomic # 9 Polarization: -6.01 SS G_CDS: 0.78 Total: -5.24 kcal Atomic # 14 Polarization: 43.19 SS G_CDS: 2.03 Total: 45.21 kcal Atomic # 16 Polarization: -0.39 SS G_CDS: -1.14 Total: -1.53 kcal Total: -64.03 3.55 -60.48 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000083824792.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.232 kcal (2) G-P(sol) polarization free energy of solvation -64.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -51.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.549 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.479 kcal (6) G-S(sol) free energy of system = (1) + (5) -48.247 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds