Wall clock time and date at job start Mon Mar 30 2020 02:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47289 * 2 1 4 4 C 1.36933 * 120.00027 * 264.07015 * 3 2 1 5 5 H 1.08001 * 120.00165 * 187.65406 * 4 3 2 6 6 C 1.38815 * 120.00071 * 7.65060 * 4 3 2 7 7 N 1.31620 * 119.99844 * 25.96594 * 6 4 3 8 8 Si 1.86801 * 119.99903 * 205.97128 * 6 4 3 9 9 H 1.48500 * 109.46950 * 84.98811 * 8 6 4 10 10 H 1.48497 * 109.46977 * 204.98358 * 8 6 4 11 11 H 1.48492 * 109.47520 * 324.98665 * 8 6 4 12 12 C 1.46498 * 119.99931 * 84.06563 * 3 2 1 13 13 H 1.09003 * 110.53897 * 2.61667 * 12 3 2 14 14 C 1.54889 * 110.48575 * 125.22544 * 12 3 2 15 15 C 1.54888 * 102.75021 * 156.62035 * 14 12 3 16 16 C 1.54265 * 104.19670 * 322.06104 * 15 14 12 17 17 C 1.53880 * 106.60045 * 23.60691 * 16 15 14 18 18 H 1.09000 * 110.03146 * 240.71814 * 17 16 15 19 19 C 1.52998 * 110.03202 * 119.28327 * 17 16 15 20 20 N 1.46904 * 109.46964 * 66.45938 * 19 17 16 21 21 H 1.08998 * 109.47091 * 299.99795 * 1 2 3 22 22 H 1.08991 * 109.47266 * 59.99905 * 1 2 3 23 23 H 1.09003 * 109.47114 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47357 * 239.99923 * 2 1 3 25 25 H 1.09004 * 109.47367 * 120.00371 * 2 1 3 26 26 H 0.97003 * 119.99767 * 179.97438 * 7 6 4 27 27 H 1.09006 * 110.75665 * 38.30773 * 14 12 3 28 28 H 1.08995 * 110.91994 * 275.00774 * 14 12 3 29 29 H 1.09000 * 110.48904 * 203.38351 * 15 14 12 30 30 H 1.09001 * 110.60281 * 80.79250 * 15 14 12 31 31 H 1.09002 * 110.03469 * 264.32163 * 16 15 14 32 32 H 1.09003 * 110.07554 * 142.91450 * 16 15 14 33 33 H 1.09001 * 109.46958 * 186.45965 * 19 17 16 34 34 H 1.08994 * 109.47372 * 306.45503 * 19 17 16 35 35 H 1.00902 * 110.99859 * 179.97438 * 20 19 17 36 36 H 1.00899 * 111.00005 * 303.95168 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3621 1.9859 -1.1795 5 1 2.8369 2.9559 -1.1708 6 6 2.1003 1.3521 -2.3865 7 7 1.1196 0.4784 -2.4719 8 14 3.1399 1.7392 -3.8894 9 1 4.3630 0.8972 -3.8754 10 1 2.3574 1.4549 -5.1191 11 1 3.5257 3.1730 -3.8686 12 6 2.1388 2.1155 1.2619 13 1 1.8699 1.4768 2.1033 14 6 3.5773 2.6631 1.4352 15 6 3.3764 3.8488 2.4113 16 6 2.0403 4.4807 1.9692 17 6 1.2534 3.3786 1.2383 18 1 1.0588 3.6790 0.2088 19 6 -0.0658 3.1075 1.9642 20 7 -0.9338 4.2881 1.8597 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 0.9365 0.0358 -3.3154 27 1 3.9758 3.0108 0.4820 28 1 4.2308 1.9087 1.8732 29 1 4.1898 4.5675 2.3112 30 1 3.3080 3.4922 3.4391 31 1 2.2275 5.3159 1.2943 32 1 1.4819 4.8230 2.8404 33 1 -0.5617 2.2504 1.5085 34 1 0.1342 2.8954 3.0144 35 1 -1.8124 4.1338 2.3313 36 1 -0.4707 5.1101 2.2170 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084214475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:30 Heat of formation + Delta-G solvation = 13.121157 kcal Electronic energy + Delta-G solvation = -15354.622030 eV Core-core repulsion = 13066.878080 eV Total energy + Delta-G solvation = -2287.743950 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.30 seconds Orbital eigenvalues (eV) -38.38294 -34.99688 -33.48973 -30.96019 -29.23744 -28.08993 -26.57971 -23.89751 -22.66885 -20.73296 -19.65148 -18.82781 -16.23438 -15.91206 -15.41326 -14.17815 -14.00940 -13.97934 -13.33161 -13.07857 -12.55453 -12.28457 -11.98629 -11.69895 -11.17697 -10.99309 -10.67198 -10.52882 -10.46991 -10.26336 -10.06023 -9.99599 -9.89029 -9.72828 -9.39256 -9.21764 -8.28328 -8.20000 -6.73547 -5.67340 -2.94403 3.46171 3.53946 3.54319 4.59014 4.93410 5.22872 5.28034 5.40949 5.52718 5.70201 5.81906 5.92761 6.14810 6.18466 6.21286 6.34223 6.43160 6.53401 6.57625 6.65299 6.75801 6.95820 6.97557 7.07944 7.10496 7.24838 7.32116 7.57716 7.77798 7.78857 7.86989 8.18398 8.47727 9.35706 10.00571 10.45312 11.37512 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027894 B = 0.011771 C = 0.010341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.567957 B = 2378.230322 C = 2707.005764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.165 3.835 3 N -0.588 5.588 4 C -0.238 4.238 5 H 0.075 0.925 6 C -0.004 4.004 7 N -0.896 5.896 8 Si 0.890 3.110 9 H -0.291 1.291 10 H -0.295 1.295 11 H -0.283 1.283 12 C 0.182 3.818 13 H 0.053 0.947 14 C -0.135 4.135 15 C -0.123 4.123 16 C -0.116 4.116 17 C -0.106 4.106 18 H 0.093 0.907 19 C 0.072 3.928 20 N -0.849 5.849 21 H 0.011 0.989 22 H 0.090 0.910 23 H 0.017 0.983 24 H 0.088 0.912 25 H -0.001 1.001 26 H 0.250 0.750 27 H 0.075 0.925 28 H 0.052 0.948 29 H 0.053 0.947 30 H 0.053 0.947 31 H 0.056 0.944 32 H 0.046 0.954 33 H 0.077 0.923 34 H 0.011 0.989 35 H 0.331 0.669 36 H 0.332 0.668 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.390 4.113 9.316 10.191 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.040 3.960 3 N -0.308 5.308 4 C -0.367 4.367 5 H 0.092 0.908 6 C -0.201 4.201 7 N -0.542 5.542 8 Si 0.721 3.279 9 H -0.218 1.218 10 H -0.221 1.221 11 H -0.209 1.209 12 C 0.072 3.928 13 H 0.072 0.928 14 C -0.174 4.174 15 C -0.161 4.161 16 C -0.154 4.154 17 C -0.127 4.127 18 H 0.112 0.888 19 C -0.058 4.058 20 N -0.378 5.378 21 H 0.030 0.970 22 H 0.108 0.892 23 H 0.036 0.964 24 H 0.106 0.894 25 H 0.018 0.982 26 H 0.060 0.940 27 H 0.094 0.906 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.072 0.928 31 H 0.075 0.925 32 H 0.064 0.936 33 H 0.095 0.905 34 H 0.029 0.971 35 H 0.142 0.858 36 H 0.145 0.855 Dipole moment (debyes) X Y Z Total from point charges 0.357 3.860 8.361 9.216 hybrid contribution 0.445 0.266 0.249 0.575 sum 0.802 4.127 8.610 9.582 Atomic orbital electron populations 1.22382 0.99421 0.97946 1.01038 1.20830 0.92362 0.84727 0.98074 1.44245 1.75177 1.10064 1.01308 1.19131 1.31358 1.02710 0.83464 0.90768 1.24661 0.98127 1.00224 0.97074 1.70174 1.27246 1.32077 1.24701 0.86454 0.80760 0.77727 0.82958 1.21848 1.22147 1.20857 1.21068 0.91908 0.90963 0.88814 0.92837 1.22902 0.99266 0.96251 0.99030 1.22289 0.96985 0.98124 0.98737 1.22135 0.96061 0.98415 0.98800 1.22377 0.93272 0.96407 1.00691 0.88840 1.21929 0.94274 0.93073 0.96504 1.58734 1.07483 1.06057 1.65503 0.96981 0.89171 0.96411 0.89393 0.98244 0.93998 0.90602 0.92932 0.92804 0.92791 0.92512 0.93571 0.90485 0.97060 0.85755 0.85516 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.46 9.75 37.15 0.36 -3.10 16 2 C 0.17 4.00 5.56 -4.04 -0.02 3.98 16 3 N -0.59 -14.26 2.57 -163.78 -0.42 -14.68 16 4 C -0.24 -6.32 7.93 -15.06 -0.12 -6.44 16 5 H 0.07 1.97 6.94 -52.49 -0.36 1.61 16 6 C 0.00 -0.11 4.88 -17.43 -0.09 -0.20 16 7 N -0.90 -25.17 8.65 55.49 0.48 -24.69 16 8 Si 0.89 21.81 29.63 -169.99 -5.04 16.78 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 11 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 12 C 0.18 3.70 2.92 -66.27 -0.19 3.50 16 13 H 0.05 1.06 7.64 -51.93 -0.40 0.66 16 14 C -0.13 -2.48 6.39 -24.74 -0.16 -2.64 16 15 C -0.12 -1.88 6.83 -25.07 -0.17 -2.05 16 16 C -0.12 -1.83 5.95 -25.61 -0.15 -1.98 16 17 C -0.11 -2.01 2.78 -89.50 -0.25 -2.26 16 18 H 0.09 2.16 7.13 -51.93 -0.37 1.79 16 19 C 0.07 1.25 5.91 -3.82 -0.02 1.23 16 20 N -0.85 -12.94 9.62 -10.37 -0.10 -13.04 16 21 H 0.01 0.25 6.08 -51.93 -0.32 -0.07 16 22 H 0.09 2.40 6.36 -51.93 -0.33 2.07 16 23 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 24 H 0.09 2.37 5.83 -51.93 -0.30 2.07 16 25 H 0.00 -0.01 8.05 -51.93 -0.42 -0.43 16 26 H 0.25 6.91 8.31 -40.82 -0.34 6.57 16 27 H 0.08 1.54 6.56 -51.93 -0.34 1.20 16 28 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 29 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 30 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 31 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 32 H 0.05 0.64 6.89 -51.93 -0.36 0.29 16 33 H 0.08 1.52 6.08 -51.93 -0.32 1.20 16 34 H 0.01 0.18 8.14 -51.93 -0.42 -0.24 16 35 H 0.33 4.27 9.08 -39.29 -0.36 3.92 16 36 H 0.33 4.50 7.66 -39.29 -0.30 4.20 16 LS Contribution 272.16 15.07 4.10 4.10 Total: -1.00 -27.65 272.16 -7.63 -35.27 By element: Atomic # 1 Polarization: 12.08 SS G_CDS: -5.84 Total: 6.24 kcal Atomic # 6 Polarization: -9.16 SS G_CDS: -0.81 Total: -9.97 kcal Atomic # 7 Polarization: -52.38 SS G_CDS: -0.04 Total: -52.42 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.04 Total: 16.78 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -27.65 -7.63 -35.27 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084214475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.396 kcal (2) G-P(sol) polarization free energy of solvation -27.646 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.749 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.275 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.30 seconds