Wall clock time and date at job start Mon Mar 30 2020 02:31:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46502 * 109.47289 * 2 1 4 4 C 1.36933 * 120.00027 * 264.07015 * 3 2 1 5 5 H 1.08001 * 120.00165 * 187.65406 * 4 3 2 6 6 C 1.38815 * 120.00071 * 7.65060 * 4 3 2 7 7 N 1.31620 * 119.99844 * 25.96594 * 6 4 3 8 8 Si 1.86801 * 119.99903 * 205.97128 * 6 4 3 9 9 H 1.48500 * 109.46950 * 84.98811 * 8 6 4 10 10 H 1.48497 * 109.46977 * 204.98358 * 8 6 4 11 11 H 1.48492 * 109.47520 * 324.98665 * 8 6 4 12 12 C 1.46498 * 119.99931 * 84.06563 * 3 2 1 13 13 H 1.09003 * 110.53897 * 2.61667 * 12 3 2 14 14 C 1.54889 * 110.48575 * 125.22544 * 12 3 2 15 15 C 1.54888 * 102.75021 * 156.62035 * 14 12 3 16 16 C 1.54265 * 104.19670 * 322.06104 * 15 14 12 17 17 C 1.53880 * 106.60045 * 23.60691 * 16 15 14 18 18 H 1.09000 * 110.03146 * 240.71814 * 17 16 15 19 19 C 1.52998 * 110.03202 * 119.28327 * 17 16 15 20 20 N 1.46904 * 109.46964 * 66.45938 * 19 17 16 21 21 H 1.08998 * 109.47091 * 299.99795 * 1 2 3 22 22 H 1.08991 * 109.47266 * 59.99905 * 1 2 3 23 23 H 1.09003 * 109.47114 * 179.97438 * 1 2 3 24 24 H 1.09005 * 109.47357 * 239.99923 * 2 1 3 25 25 H 1.09004 * 109.47367 * 120.00371 * 2 1 3 26 26 H 0.97003 * 119.99767 * 179.97438 * 7 6 4 27 27 H 1.09006 * 110.75665 * 38.30773 * 14 12 3 28 28 H 1.08995 * 110.91994 * 275.00774 * 14 12 3 29 29 H 1.09000 * 110.48904 * 203.38351 * 15 14 12 30 30 H 1.09001 * 110.60281 * 80.79250 * 15 14 12 31 31 H 1.09002 * 110.03469 * 264.32163 * 16 15 14 32 32 H 1.09003 * 110.07554 * 142.91450 * 16 15 14 33 33 H 1.09001 * 109.46958 * 186.45965 * 19 17 16 34 34 H 1.08994 * 109.47372 * 306.45503 * 19 17 16 35 35 H 1.00902 * 110.99859 * 179.97438 * 20 19 17 36 36 H 1.00899 * 111.00005 * 303.95168 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3812 0.0000 4 6 2.3621 1.9859 -1.1795 5 1 2.8369 2.9559 -1.1708 6 6 2.1003 1.3521 -2.3865 7 7 1.1196 0.4784 -2.4719 8 14 3.1399 1.7392 -3.8894 9 1 4.3630 0.8972 -3.8754 10 1 2.3574 1.4549 -5.1191 11 1 3.5257 3.1730 -3.8686 12 6 2.1388 2.1155 1.2619 13 1 1.8699 1.4768 2.1033 14 6 3.5773 2.6631 1.4352 15 6 3.3764 3.8488 2.4113 16 6 2.0403 4.4807 1.9692 17 6 1.2534 3.3786 1.2383 18 1 1.0588 3.6790 0.2088 19 6 -0.0658 3.1075 1.9642 20 7 -0.9338 4.2881 1.8597 21 1 -0.3633 0.5138 0.8900 22 1 -0.3633 0.5138 -0.8899 23 1 -0.3633 -1.0277 -0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5139 0.8900 26 1 0.9365 0.0358 -3.3154 27 1 3.9758 3.0108 0.4820 28 1 4.2308 1.9087 1.8732 29 1 4.1898 4.5675 2.3112 30 1 3.3080 3.4922 3.4391 31 1 2.2275 5.3159 1.2943 32 1 1.4819 4.8230 2.8404 33 1 -0.5617 2.2504 1.5085 34 1 0.1342 2.8954 3.0144 35 1 -1.8124 4.1338 2.3313 36 1 -0.4707 5.1101 2.2170 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084214475.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:31:30 Heat of formation + Delta-G solvation = -4.424379 kcal Electronic energy + Delta-G solvation = -15355.382861 eV Core-core repulsion = 13066.878080 eV Total energy + Delta-G solvation = -2288.504781 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.91688 -36.78321 -34.84339 -32.94103 -31.04400 -29.47793 -28.24027 -25.77151 -24.14113 -22.54215 -21.27861 -20.28829 -18.11349 -17.44900 -17.02925 -15.96008 -15.55538 -15.35709 -14.97385 -14.79551 -14.04243 -13.97294 -13.67185 -13.33668 -13.03902 -12.77714 -12.57130 -12.30380 -12.03835 -11.86481 -11.73411 -11.69104 -11.42106 -11.23624 -11.18761 -11.04933 -10.22568 -9.50196 -8.68507 -7.74186 -5.00722 1.48192 1.51524 1.57094 2.58933 3.32185 3.60209 3.72775 3.97507 4.11814 4.19910 4.49674 4.53989 4.66554 4.69722 4.78787 4.88083 4.93525 5.01065 5.08287 5.18351 5.23740 5.26419 5.31735 5.37288 5.58087 5.63187 5.66893 5.77528 5.85657 6.19224 6.34481 6.45312 6.71513 7.30477 8.05525 8.44283 9.28794 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027894 B = 0.011771 C = 0.010341 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1003.567957 B = 2378.230322 C = 2707.005764 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.133 4.133 2 C 0.166 3.834 3 N -0.601 5.601 4 C -0.232 4.232 5 H 0.069 0.931 6 C -0.055 4.055 7 N -0.917 5.917 8 Si 0.944 3.056 9 H -0.292 1.292 10 H -0.302 1.302 11 H -0.278 1.278 12 C 0.172 3.828 13 H 0.064 0.936 14 C -0.133 4.133 15 C -0.112 4.112 16 C -0.110 4.110 17 C -0.100 4.100 18 H 0.044 0.956 19 C 0.080 3.920 20 N -0.858 5.858 21 H 0.025 0.975 22 H 0.053 0.947 23 H 0.030 0.970 24 H 0.057 0.943 25 H 0.020 0.980 26 H 0.242 0.758 27 H 0.049 0.951 28 H 0.059 0.941 29 H 0.070 0.930 30 H 0.077 0.923 31 H 0.053 0.947 32 H 0.073 0.927 33 H 0.048 0.952 34 H 0.035 0.965 35 H 0.346 0.654 36 H 0.345 0.655 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.871 5.144 11.413 12.549 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C 0.041 3.959 3 N -0.321 5.321 4 C -0.362 4.362 5 H 0.087 0.913 6 C -0.250 4.250 7 N -0.566 5.566 8 Si 0.775 3.225 9 H -0.220 1.220 10 H -0.229 1.229 11 H -0.203 1.203 12 C 0.064 3.936 13 H 0.082 0.918 14 C -0.173 4.173 15 C -0.150 4.150 16 C -0.148 4.148 17 C -0.121 4.121 18 H 0.063 0.937 19 C -0.050 4.050 20 N -0.390 5.390 21 H 0.044 0.956 22 H 0.072 0.928 23 H 0.049 0.951 24 H 0.075 0.925 25 H 0.038 0.962 26 H 0.052 0.948 27 H 0.068 0.932 28 H 0.078 0.922 29 H 0.089 0.911 30 H 0.096 0.904 31 H 0.071 0.929 32 H 0.092 0.908 33 H 0.066 0.934 34 H 0.053 0.947 35 H 0.159 0.841 36 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges 0.845 4.920 10.490 11.618 hybrid contribution 0.279 -0.034 -0.343 0.443 sum 1.124 4.886 10.148 11.319 Atomic orbital electron populations 1.22151 0.98833 0.98419 0.99829 1.20725 0.92817 0.84920 0.97482 1.44399 1.75304 1.10328 1.02053 1.19258 1.30141 1.02290 0.84511 0.91338 1.25242 0.99271 1.01192 0.99259 1.70328 1.28320 1.33327 1.24577 0.85591 0.79146 0.77548 0.80196 1.21956 1.22886 1.20350 1.21360 0.93540 0.91455 0.87265 0.91831 1.22822 0.97735 0.97828 0.98890 1.22251 0.97009 0.96862 0.98856 1.22085 0.96252 0.97072 0.99359 1.22170 0.94535 0.96703 0.98693 0.93702 1.21719 0.93311 0.92836 0.97147 1.58608 1.08099 1.05850 1.66425 0.95590 0.92799 0.95052 0.92459 0.96166 0.94815 0.93237 0.92187 0.91104 0.90430 0.92852 0.90792 0.93404 0.94671 0.84073 0.84111 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.22 9.75 71.98 0.70 -5.52 16 2 C 0.17 8.07 5.56 86.38 0.48 8.55 16 3 N -0.60 -29.27 2.57 -672.07 -1.73 -30.99 16 4 C -0.23 -12.56 7.93 84.03 0.67 -11.89 16 5 H 0.07 3.72 6.94 -2.91 -0.02 3.70 16 6 C -0.06 -3.10 4.88 84.86 0.41 -2.68 16 7 N -0.92 -53.14 8.65 21.65 0.19 -52.95 16 8 Si 0.94 45.89 29.63 68.60 2.03 47.93 16 9 H -0.29 -14.10 7.11 99.48 0.71 -13.40 16 10 H -0.30 -14.89 7.11 99.48 0.71 -14.18 16 11 H -0.28 -13.13 7.11 99.48 0.71 -12.42 16 12 C 0.17 6.76 2.92 46.07 0.13 6.90 16 13 H 0.06 2.37 7.64 -2.39 -0.02 2.35 16 14 C -0.13 -4.67 6.39 31.88 0.20 -4.46 16 15 C -0.11 -2.99 6.83 31.67 0.22 -2.78 16 16 C -0.11 -3.13 5.95 31.32 0.19 -2.94 16 17 C -0.10 -3.66 2.78 -10.07 -0.03 -3.69 16 18 H 0.04 2.09 7.13 -2.39 -0.02 2.07 16 19 C 0.08 2.62 5.91 86.30 0.51 3.13 16 20 N -0.86 -24.34 9.62 -186.72 -1.80 -26.14 16 21 H 0.03 1.10 6.08 -2.39 -0.01 1.09 16 22 H 0.05 2.93 6.36 -2.39 -0.02 2.92 16 23 H 0.03 1.32 8.14 -2.39 -0.02 1.30 16 24 H 0.06 3.15 5.83 -2.38 -0.01 3.14 16 25 H 0.02 0.89 8.05 -2.38 -0.02 0.87 16 26 H 0.24 13.87 8.31 -92.71 -0.77 13.10 16 27 H 0.05 1.98 6.56 -2.38 -0.02 1.97 16 28 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 29 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 30 H 0.08 1.76 8.14 -2.39 -0.02 1.75 16 31 H 0.05 1.56 8.14 -2.39 -0.02 1.55 16 32 H 0.07 1.73 6.89 -2.39 -0.02 1.71 16 33 H 0.05 1.84 6.08 -2.39 -0.01 1.82 16 34 H 0.04 0.99 8.14 -2.39 -0.02 0.97 16 35 H 0.35 8.11 9.08 -89.69 -0.81 7.29 16 36 H 0.35 8.33 7.66 -89.69 -0.69 7.64 16 Total: -1.00 -60.41 272.16 1.75 -58.66 By element: Atomic # 1 Polarization: 19.31 SS G_CDS: -0.43 Total: 18.87 kcal Atomic # 6 Polarization: -18.87 SS G_CDS: 3.49 Total: -15.38 kcal Atomic # 7 Polarization: -106.74 SS G_CDS: -3.34 Total: -110.08 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.93 kcal Total: -60.41 1.75 -58.66 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084214475.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.236 kcal (2) G-P(sol) polarization free energy of solvation -60.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.175 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.750 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.660 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.424 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds