Wall clock time and date at job start Mon Mar 30 2020 02:44:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36944 * 119.99809 * 2 1 4 4 H 1.08004 * 119.99621 * 202.01680 * 3 2 1 5 5 C 1.38803 * 120.00329 * 22.02173 * 3 2 1 6 6 N 1.31623 * 119.99926 * 12.52749 * 5 3 2 7 7 Si 1.86796 * 120.00294 * 192.52678 * 5 3 2 8 8 H 1.48502 * 109.47253 * 89.99886 * 7 5 3 9 9 H 1.48497 * 109.47380 * 210.00056 * 7 5 3 10 10 H 1.48500 * 109.47225 * 329.99910 * 7 5 3 11 11 C 1.46494 * 120.00021 * 179.97438 * 2 1 3 12 12 H 1.09003 * 109.47408 * 179.97438 * 11 2 1 13 13 C 1.52996 * 109.47398 * 300.00029 * 11 2 1 14 14 C 1.53001 * 109.47352 * 179.97438 * 13 11 2 15 15 C 1.52997 * 109.47387 * 300.00364 * 14 13 11 16 16 C 1.52996 * 109.47172 * 59.99526 * 15 14 13 17 17 C 1.52995 * 109.47466 * 300.00208 * 16 15 14 18 18 H 1.09003 * 109.47311 * 300.00267 * 17 16 15 19 19 C 1.53000 * 109.47228 * 179.97438 * 17 16 15 20 20 N 1.46907 * 109.47017 * 65.00397 * 19 17 16 21 21 H 1.09004 * 109.46994 * 274.31628 * 1 2 3 22 22 H 1.09005 * 109.47223 * 34.31381 * 1 2 3 23 23 H 1.08997 * 109.46848 * 154.31258 * 1 2 3 24 24 H 0.97002 * 120.00125 * 180.02562 * 6 5 3 25 25 H 1.09004 * 109.47107 * 299.99807 * 13 11 2 26 26 H 1.09005 * 109.46982 * 60.00042 * 13 11 2 27 27 H 1.09005 * 109.46744 * 60.00262 * 14 13 11 28 28 H 1.08996 * 109.47111 * 179.97438 * 14 13 11 29 29 H 1.09003 * 109.46615 * 299.99865 * 15 14 13 30 30 H 1.09003 * 109.47100 * 180.02562 * 15 14 13 31 31 H 1.09003 * 109.47359 * 179.97438 * 16 15 14 32 32 H 1.09003 * 109.47074 * 60.00620 * 16 15 14 33 33 H 1.09001 * 109.46942 * 184.99970 * 19 17 16 34 34 H 1.08998 * 109.47242 * 305.00049 * 19 17 16 35 35 H 1.00898 * 110.99607 * 56.04337 * 20 19 17 36 36 H 1.00899 * 110.99575 * 179.97438 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1860 0.0000 4 1 3.1707 1.2201 -0.3507 5 6 1.5316 2.3442 0.4507 6 7 0.3904 2.2704 1.1023 7 14 2.3195 4.0078 0.1327 8 1 1.8311 4.5475 -1.1617 9 1 1.9582 4.9440 1.2272 10 1 3.7956 3.8544 0.0796 11 6 2.1975 -1.2687 0.0006 12 1 3.2692 -1.0695 0.0000 13 6 1.8279 -2.0704 1.2501 14 6 2.5924 -3.3957 1.2504 15 6 2.2224 -4.1983 0.0015 16 6 2.5919 -3.3965 -1.2481 17 6 1.8274 -2.0713 -1.2484 18 1 0.7556 -2.2701 -1.2480 19 6 2.1975 -1.2693 -2.4977 20 7 1.7346 -1.9852 -3.6941 21 1 -0.3633 0.0773 1.0248 22 1 -0.3634 0.8488 -0.5793 23 1 -0.3633 -0.9261 -0.4454 24 1 -0.0417 3.0798 1.4169 25 1 2.0913 -1.4985 2.1399 26 1 0.7562 -2.2697 1.2502 27 1 3.6642 -3.1969 1.2501 28 1 2.3295 -3.9667 2.1408 29 1 1.1506 -4.3971 0.0018 30 1 2.7667 -5.1427 0.0019 31 1 2.3287 -3.9685 -2.1379 32 1 3.6637 -3.1977 -1.2484 33 1 1.7224 -0.2892 -2.4542 34 1 3.2796 -1.1468 -2.5434 35 1 0.7436 -2.1681 -3.6451 36 1 1.9670 -1.4751 -4.5331 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084214807.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:44:52 Heat of formation + Delta-G solvation = -17.908732 kcal Electronic energy + Delta-G solvation = -15271.955721 eV Core-core repulsion = 12982.866215 eV Total energy + Delta-G solvation = -2289.089506 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.31 seconds Orbital eigenvalues (eV) -40.13630 -36.50353 -35.36299 -33.19618 -31.02609 -29.95542 -28.02250 -25.57202 -24.65128 -22.25493 -21.63598 -20.26893 -18.69602 -17.18487 -16.63642 -15.74450 -15.67940 -15.50706 -15.06387 -14.84578 -14.37039 -14.09921 -13.81036 -13.08663 -12.92516 -12.81690 -12.64427 -12.58695 -12.41847 -12.11929 -12.00553 -11.78936 -11.65815 -11.19350 -10.97768 -10.93976 -10.55462 -9.49498 -8.70851 -7.80036 -5.25995 1.44222 1.44692 1.53573 2.50539 3.32449 3.63189 3.71612 3.95892 4.08139 4.27544 4.37609 4.50342 4.60478 4.69928 4.71922 4.84494 4.88129 4.89072 5.00023 5.19352 5.24620 5.33169 5.36811 5.39695 5.44693 5.45558 5.60472 5.68354 5.71998 5.77267 6.27383 6.35765 6.66626 7.18230 7.92708 8.36697 9.22979 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.033182 B = 0.010314 C = 0.008968 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 843.622024 B = 2714.172642 C = 3121.566897 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.187 3.813 2 N -0.606 5.606 3 C -0.251 4.251 4 H 0.067 0.933 5 C -0.057 4.057 6 N -0.941 5.941 7 Si 0.964 3.036 8 H -0.288 1.288 9 H -0.297 1.297 10 H -0.269 1.269 11 C 0.178 3.822 12 H 0.048 0.952 13 C -0.122 4.122 14 C -0.110 4.110 15 C -0.113 4.113 16 C -0.094 4.094 17 C -0.083 4.083 18 H 0.053 0.947 19 C 0.080 3.920 20 N -0.843 5.843 21 H -0.003 1.003 22 H 0.011 0.989 23 H 0.024 0.976 24 H 0.245 0.755 25 H 0.031 0.969 26 H 0.045 0.955 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.057 0.943 30 H 0.079 0.921 31 H 0.075 0.925 32 H 0.054 0.946 33 H 0.012 0.988 34 H 0.056 0.944 35 H 0.340 0.660 36 H 0.343 0.657 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.084 -11.135 -5.139 12.646 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.328 5.328 3 C -0.382 4.382 4 H 0.085 0.915 5 C -0.251 4.251 6 N -0.588 5.588 7 Si 0.793 3.207 8 H -0.216 1.216 9 H -0.224 1.224 10 H -0.194 1.194 11 C 0.071 3.929 12 H 0.066 0.934 13 C -0.162 4.162 14 C -0.148 4.148 15 C -0.150 4.150 16 C -0.132 4.132 17 C -0.104 4.104 18 H 0.072 0.928 19 C -0.051 4.051 20 N -0.372 5.372 21 H 0.015 0.985 22 H 0.030 0.970 23 H 0.043 0.957 24 H 0.055 0.945 25 H 0.050 0.950 26 H 0.064 0.936 27 H 0.079 0.921 28 H 0.086 0.914 29 H 0.076 0.924 30 H 0.097 0.903 31 H 0.093 0.907 32 H 0.073 0.927 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.152 0.848 36 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 3.507 -11.573 -4.844 13.027 hybrid contribution -0.597 2.367 0.080 2.442 sum 2.911 -9.206 -4.765 10.767 Atomic orbital electron populations 1.20359 0.83344 0.95199 0.96933 1.44133 1.01651 1.01253 1.85790 1.19523 0.97669 0.86630 1.34337 0.91492 1.25712 0.98675 1.01561 0.99173 1.70245 1.19900 1.27075 1.41617 0.85307 0.78433 0.80304 0.76694 1.21552 1.22363 1.19384 1.20545 0.94638 0.84745 0.92976 0.93362 1.21933 0.99599 0.96495 0.98165 1.21498 0.99781 0.94820 0.98692 1.21528 1.01268 0.98389 0.93850 1.21385 0.99149 0.94514 0.98131 1.21441 0.99473 0.95471 0.94025 0.92830 1.21528 0.99080 0.94419 0.90093 1.58828 1.21726 1.52490 1.04130 0.98490 0.97001 0.95748 0.94538 0.94993 0.93641 0.92070 0.91360 0.92411 0.90254 0.90673 0.92736 0.97009 0.92564 0.84781 0.84431 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.19 9.44 8.00 127.77 1.02 10.46 16 2 N -0.61 -30.31 1.96 -702.78 -1.38 -31.69 16 3 C -0.25 -13.89 9.59 84.03 0.81 -13.08 16 4 H 0.07 3.63 7.81 -2.91 -0.02 3.60 16 5 C -0.06 -3.23 5.11 84.86 0.43 -2.79 16 6 N -0.94 -56.75 10.63 21.65 0.23 -56.52 16 7 Si 0.96 45.93 29.57 68.60 2.03 47.96 16 8 H -0.29 -13.57 7.11 99.48 0.71 -12.86 16 9 H -0.30 -14.29 7.11 99.48 0.71 -13.58 16 10 H -0.27 -12.20 7.11 99.48 0.71 -11.49 16 11 C 0.18 7.23 2.03 44.99 0.09 7.33 16 12 H 0.05 2.05 7.86 -2.39 -0.02 2.03 16 13 C -0.12 -4.57 5.20 30.59 0.16 -4.41 16 14 C -0.11 -3.07 5.92 30.59 0.18 -2.89 16 15 C -0.11 -2.77 5.92 30.59 0.18 -2.59 16 16 C -0.09 -2.56 5.09 30.59 0.16 -2.40 16 17 C -0.08 -2.80 1.71 -10.79 -0.02 -2.82 16 18 H 0.05 1.88 6.66 -2.39 -0.02 1.87 16 19 C 0.08 2.70 6.09 86.30 0.53 3.22 16 20 N -0.84 -22.48 9.08 -186.70 -1.70 -24.18 16 21 H 0.00 -0.18 7.41 -2.39 -0.02 -0.20 16 22 H 0.01 0.63 7.21 -2.38 -0.02 0.61 16 23 H 0.02 1.06 6.43 -2.39 -0.02 1.05 16 24 H 0.25 14.45 8.31 -92.71 -0.77 13.68 16 25 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 26 H 0.04 1.74 7.67 -2.38 -0.02 1.72 16 27 H 0.06 1.67 8.14 -2.38 -0.02 1.65 16 28 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 29 H 0.06 1.42 8.14 -2.39 -0.02 1.40 16 30 H 0.08 1.58 8.14 -2.39 -0.02 1.56 16 31 H 0.07 1.94 7.75 -2.39 -0.02 1.92 16 32 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 33 H 0.01 0.48 7.44 -2.39 -0.02 0.46 16 34 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 35 H 0.34 8.54 8.99 -89.70 -0.81 7.73 16 36 H 0.34 8.04 9.08 -89.70 -0.81 7.23 16 Total: -1.00 -61.80 276.86 2.15 -59.64 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -0.57 Total: 14.76 kcal Atomic # 6 Polarization: -13.51 SS G_CDS: 3.54 Total: -9.98 kcal Atomic # 7 Polarization: -109.54 SS G_CDS: -2.84 Total: -112.39 kcal Atomic # 14 Polarization: 45.93 SS G_CDS: 2.03 Total: 47.96 kcal Total: -61.80 2.15 -59.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084214807.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.735 kcal (2) G-P(sol) polarization free energy of solvation -61.798 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.064 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.155 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.643 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.909 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds