Wall clock time and date at job start Mon Mar 30 2020 02:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00212 * 2 1 4 4 C 1.46901 * 111.00060 * 123.96150 * 2 1 3 5 5 C 1.53000 * 109.46841 * 169.99859 * 4 2 1 6 6 N 1.46904 * 109.47063 * 179.97438 * 5 4 2 7 7 C 1.47843 * 110.99640 * 49.15380 * 6 5 4 8 8 C 1.54916 * 104.79337 * 146.36598 * 7 6 5 9 9 C 1.55398 * 101.74107 * 323.02060 * 8 7 6 10 10 H 1.09005 * 110.67856 * 277.17709 * 9 8 7 11 11 C 1.50693 * 110.84773 * 153.86113 * 9 8 7 12 12 H 1.08003 * 120.00166 * 246.46481 * 11 9 8 13 13 C 1.37883 * 119.99850 * 66.46355 * 11 9 8 14 14 N 1.31508 * 119.99898 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99869 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47125 * 60.00068 * 15 13 11 17 17 H 1.48500 * 109.46862 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47348 * 299.99785 * 15 13 11 19 19 C 1.47439 * 111.00045 * 170.00088 * 6 5 4 20 20 H 1.08997 * 109.46956 * 296.04144 * 1 2 3 21 21 H 1.08994 * 109.47291 * 56.04041 * 1 2 3 22 22 H 1.08999 * 109.47204 * 176.04153 * 1 2 3 23 23 H 1.08993 * 109.47512 * 183.95573 * 3 2 1 24 24 H 1.09003 * 109.47417 * 303.96384 * 3 2 1 25 25 H 1.09006 * 109.46747 * 63.95553 * 3 2 1 26 26 H 1.08996 * 109.47258 * 49.99715 * 4 2 1 27 27 H 1.09001 * 109.46368 * 289.99127 * 4 2 1 28 28 H 1.09004 * 109.47513 * 60.00140 * 5 4 2 29 29 H 1.08998 * 109.47248 * 299.99781 * 5 4 2 30 30 H 1.08996 * 110.37823 * 265.19398 * 7 6 5 31 31 H 1.09001 * 110.37314 * 27.42672 * 7 6 5 32 32 H 1.08995 * 110.98807 * 81.01940 * 8 7 6 33 33 H 1.08997 * 110.99076 * 204.80412 * 8 7 6 34 34 H 0.97004 * 120.00131 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.88998 * 356.14887 * 19 6 5 36 36 H 1.09003 * 109.88733 * 117.17548 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5044 -0.9555 0.9701 6 7 4.0310 -1.7211 2.1079 7 6 3.2217 -2.9344 2.3500 8 6 4.2350 -3.9913 2.8560 9 6 5.4880 -3.6650 1.9966 10 1 5.4155 -4.1358 1.0162 11 6 6.7488 -4.0924 2.7027 12 1 7.4575 -3.3501 3.0392 13 6 6.9976 -5.4312 2.9193 14 7 6.1349 -6.3350 2.5092 15 14 8.5601 -5.9610 3.7953 16 1 8.5913 -5.3657 5.1554 17 1 8.5900 -7.4419 3.9017 18 1 9.7414 -5.4967 3.0245 19 6 5.4279 -2.1282 1.8696 20 1 -0.3633 0.4512 0.9233 21 1 -0.3633 0.5740 -0.8523 22 1 -0.3633 -1.0252 -0.0709 23 1 3.0827 1.3432 -0.0709 24 1 1.5897 1.9164 -0.8523 25 1 1.7044 1.8723 0.9234 26 1 1.5090 -1.7408 1.1754 27 1 1.7976 -0.2248 2.0627 28 1 3.9910 0.0192 0.9322 29 1 3.7023 -1.4966 0.0449 30 1 2.4647 -2.7403 3.1098 31 1 2.7526 -3.2685 1.4246 32 1 4.4452 -3.8542 3.9167 33 1 3.8769 -5.0016 2.6584 34 1 6.3097 -7.2769 2.6619 35 1 5.7366 -1.8264 0.8687 36 1 6.0799 -1.6689 2.6128 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000084447003.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:34 Heat of formation + Delta-G solvation = 5.389807 kcal Electronic energy + Delta-G solvation = -14469.240819 eV Core-core repulsion = 12181.161613 eV Total energy + Delta-G solvation = -2288.079206 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.53454 -36.92346 -33.18831 -31.02565 -28.32204 -27.86191 -27.51460 -24.41875 -23.23502 -21.25892 -19.47683 -19.44703 -16.50753 -15.76566 -15.45959 -15.03817 -14.53966 -14.11630 -14.02533 -13.37919 -12.62704 -12.43280 -12.30629 -12.04335 -11.76597 -11.72599 -11.46834 -10.98852 -10.88806 -10.65221 -10.49403 -10.46142 -10.15270 -9.61980 -9.25262 -8.84517 -8.38255 -8.35705 -7.54346 -6.00139 -4.02628 3.34056 3.38377 3.41220 3.89455 4.45583 4.85900 5.05291 5.13448 5.32017 5.33140 5.36190 5.51867 5.60485 5.76577 5.77832 5.85232 5.91087 6.01531 6.21398 6.26179 6.30216 6.42075 6.61821 6.91087 6.98771 7.01652 7.18689 7.21960 7.61727 7.63909 7.86745 7.92676 8.02501 8.44463 8.99013 9.61136 11.10057 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.077558 B = 0.005879 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.932348 B = 4761.249248 C = 4963.768649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.550 5.550 3 C 0.022 3.978 4 C 0.054 3.946 5 C 0.056 3.944 6 N -0.534 5.534 7 C 0.035 3.965 8 C -0.106 4.106 9 C 0.035 3.965 10 H 0.030 0.970 11 C -0.511 4.511 12 H 0.057 0.943 13 C 0.063 3.937 14 N -0.891 5.891 15 Si 0.892 3.108 16 H -0.277 1.277 17 H -0.288 1.288 18 H -0.277 1.277 19 C 0.048 3.952 20 H 0.023 0.977 21 H 0.065 0.935 22 H 0.067 0.933 23 H 0.072 0.928 24 H 0.064 0.936 25 H 0.024 0.976 26 H 0.076 0.924 27 H 0.040 0.960 28 H 0.066 0.934 29 H 0.038 0.962 30 H 0.059 0.941 31 H 0.034 0.966 32 H 0.056 0.944 33 H 0.068 0.932 34 H 0.260 0.740 35 H 0.033 0.967 36 H 0.068 0.932 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.872 10.445 -3.260 14.087 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.274 5.274 3 C -0.126 4.126 4 C -0.073 4.073 5 C -0.073 4.073 6 N -0.259 5.259 7 C -0.092 4.092 8 C -0.145 4.145 9 C 0.016 3.984 10 H 0.048 0.952 11 C -0.549 4.549 12 H 0.075 0.925 13 C -0.139 4.139 14 N -0.529 5.529 15 Si 0.720 3.280 16 H -0.202 1.202 17 H -0.214 1.214 18 H -0.203 1.203 19 C -0.079 4.079 20 H 0.042 0.958 21 H 0.084 0.916 22 H 0.086 0.914 23 H 0.090 0.910 24 H 0.083 0.917 25 H 0.043 0.957 26 H 0.095 0.905 27 H 0.058 0.942 28 H 0.084 0.916 29 H 0.056 0.944 30 H 0.077 0.923 31 H 0.052 0.948 32 H 0.075 0.925 33 H 0.087 0.913 34 H 0.070 0.930 35 H 0.052 0.948 36 H 0.087 0.913 Dipole moment (debyes) X Y Z Total from point charges -8.770 10.354 -3.270 13.957 hybrid contribution 0.541 -0.467 0.475 0.858 sum -8.229 9.886 -2.795 13.163 Atomic orbital electron populations 1.22353 0.87493 1.02208 1.00166 1.61940 1.07671 1.13921 1.43877 1.22431 1.01299 0.88797 1.00081 1.22245 0.95967 0.98244 0.90881 1.22197 0.93386 0.98656 0.93020 1.63686 1.03615 1.21326 1.37300 1.23140 0.96799 0.90727 0.98552 1.22685 0.95270 0.96552 0.99961 1.19846 0.94129 0.88565 0.95858 0.95158 1.21044 1.04606 0.91835 1.37432 0.92503 1.24980 0.96548 0.96751 0.95622 1.69951 1.35494 1.00911 1.46580 0.86666 0.83778 0.77311 0.80285 1.20230 1.21361 1.20291 1.23000 0.87387 0.99024 0.98467 0.95809 0.91575 0.91390 0.90960 0.91747 0.95704 0.90517 0.94203 0.91589 0.94371 0.92278 0.94759 0.92529 0.91331 0.93013 0.94837 0.91332 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 9.57 60.06 0.57 0.85 16 2 N -0.55 -7.12 5.02 -251.27 -1.26 -8.38 16 3 C 0.02 0.25 9.32 60.06 0.56 0.81 16 4 C 0.05 0.79 4.62 -3.82 -0.02 0.77 16 5 C 0.06 0.94 4.75 -3.82 -0.02 0.92 16 6 N -0.53 -10.48 5.31 -231.24 -1.23 -11.71 16 7 C 0.04 0.70 5.31 -2.29 -0.01 0.69 16 8 C -0.11 -2.52 5.96 -24.45 -0.15 -2.66 16 9 C 0.04 0.90 2.79 -89.81 -0.25 0.65 16 10 H 0.03 0.84 8.14 -51.93 -0.42 0.42 16 11 C -0.51 -14.17 8.47 -34.44 -0.29 -14.46 16 12 H 0.06 1.55 7.53 -52.48 -0.40 1.16 16 13 C 0.06 1.75 5.36 -17.82 -0.10 1.66 16 14 N -0.89 -25.81 12.51 55.43 0.69 -25.11 16 15 Si 0.89 21.42 29.54 -169.99 -5.02 16.40 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 17 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 18 H -0.28 -6.57 7.11 56.52 0.40 -6.17 16 19 C 0.05 1.06 6.45 -2.84 -0.02 1.04 16 20 H 0.02 0.24 8.14 -51.93 -0.42 -0.19 16 21 H 0.07 0.60 8.12 -51.93 -0.42 0.17 16 22 H 0.07 0.70 8.12 -51.93 -0.42 0.27 16 23 H 0.07 0.82 6.47 -51.93 -0.34 0.48 16 24 H 0.06 0.61 8.12 -51.93 -0.42 0.19 16 25 H 0.02 0.26 8.14 -51.93 -0.42 -0.16 16 26 H 0.08 1.14 6.40 -51.93 -0.33 0.81 16 27 H 0.04 0.58 8.12 -51.93 -0.42 0.16 16 28 H 0.07 1.04 6.55 -51.93 -0.34 0.70 16 29 H 0.04 0.68 7.96 -51.93 -0.41 0.27 16 30 H 0.06 1.07 8.14 -51.93 -0.42 0.65 16 31 H 0.03 0.66 7.02 -51.93 -0.36 0.30 16 32 H 0.06 1.40 8.04 -51.93 -0.42 0.98 16 33 H 0.07 1.73 7.78 -51.93 -0.40 1.32 16 34 H 0.26 7.20 8.31 -40.82 -0.34 6.86 16 35 H 0.03 0.70 7.49 -51.93 -0.39 0.31 16 36 H 0.07 1.53 7.63 -51.93 -0.40 1.14 16 LS Contribution 282.53 15.07 4.26 4.26 Total: -1.00 -28.68 282.53 -8.57 -37.26 By element: Atomic # 1 Polarization: 3.34 SS G_CDS: -6.30 Total: -2.96 kcal Atomic # 6 Polarization: -10.03 SS G_CDS: 0.29 Total: -9.75 kcal Atomic # 7 Polarization: -43.41 SS G_CDS: -1.80 Total: -45.20 kcal Atomic # 14 Polarization: 21.42 SS G_CDS: -5.02 Total: 16.40 kcal Total LS contribution 4.26 Total: 4.26 kcal Total: -28.68 -8.57 -37.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084447003.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.648 kcal (2) G-P(sol) polarization free energy of solvation -28.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.965 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.575 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.258 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds