Wall clock time and date at job start Mon Mar 30 2020 02:40:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46897 * 111.00212 * 2 1 4 4 C 1.46901 * 111.00060 * 123.96150 * 2 1 3 5 5 C 1.53000 * 109.46841 * 169.99859 * 4 2 1 6 6 N 1.46904 * 109.47063 * 179.97438 * 5 4 2 7 7 C 1.47843 * 110.99640 * 49.15380 * 6 5 4 8 8 C 1.54916 * 104.79337 * 146.36598 * 7 6 5 9 9 C 1.55398 * 101.74107 * 323.02060 * 8 7 6 10 10 H 1.09005 * 110.67856 * 277.17709 * 9 8 7 11 11 C 1.50693 * 110.84773 * 153.86113 * 9 8 7 12 12 H 1.08003 * 120.00166 * 246.46481 * 11 9 8 13 13 C 1.37883 * 119.99850 * 66.46355 * 11 9 8 14 14 N 1.31508 * 119.99898 * 0.02562 * 13 11 9 15 15 Si 1.86800 * 119.99869 * 180.02562 * 13 11 9 16 16 H 1.48503 * 109.47125 * 60.00068 * 15 13 11 17 17 H 1.48500 * 109.46862 * 180.02562 * 15 13 11 18 18 H 1.48500 * 109.47348 * 299.99785 * 15 13 11 19 19 C 1.47439 * 111.00045 * 170.00088 * 6 5 4 20 20 H 1.08997 * 109.46956 * 296.04144 * 1 2 3 21 21 H 1.08994 * 109.47291 * 56.04041 * 1 2 3 22 22 H 1.08999 * 109.47204 * 176.04153 * 1 2 3 23 23 H 1.08993 * 109.47512 * 183.95573 * 3 2 1 24 24 H 1.09003 * 109.47417 * 303.96384 * 3 2 1 25 25 H 1.09006 * 109.46747 * 63.95553 * 3 2 1 26 26 H 1.08996 * 109.47258 * 49.99715 * 4 2 1 27 27 H 1.09001 * 109.46368 * 289.99127 * 4 2 1 28 28 H 1.09004 * 109.47513 * 60.00140 * 5 4 2 29 29 H 1.08998 * 109.47248 * 299.99781 * 5 4 2 30 30 H 1.08996 * 110.37823 * 265.19398 * 7 6 5 31 31 H 1.09001 * 110.37314 * 27.42672 * 7 6 5 32 32 H 1.08995 * 110.98807 * 81.01940 * 8 7 6 33 33 H 1.08997 * 110.99076 * 204.80412 * 8 7 6 34 34 H 0.97004 * 120.00131 * 180.02562 * 14 13 11 35 35 H 1.09002 * 109.88998 * 356.14887 * 19 6 5 36 36 H 1.09003 * 109.88733 * 117.17548 * 19 6 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.9954 -0.7661 1.1375 5 6 3.5044 -0.9555 0.9701 6 7 4.0310 -1.7211 2.1079 7 6 3.2217 -2.9344 2.3500 8 6 4.2350 -3.9913 2.8560 9 6 5.4880 -3.6650 1.9966 10 1 5.4155 -4.1358 1.0162 11 6 6.7488 -4.0924 2.7027 12 1 7.4575 -3.3501 3.0392 13 6 6.9976 -5.4312 2.9193 14 7 6.1349 -6.3350 2.5092 15 14 8.5601 -5.9610 3.7953 16 1 8.5913 -5.3657 5.1554 17 1 8.5900 -7.4419 3.9017 18 1 9.7414 -5.4967 3.0245 19 6 5.4279 -2.1282 1.8696 20 1 -0.3633 0.4512 0.9233 21 1 -0.3633 0.5740 -0.8523 22 1 -0.3633 -1.0252 -0.0709 23 1 3.0827 1.3432 -0.0709 24 1 1.5897 1.9164 -0.8523 25 1 1.7044 1.8723 0.9234 26 1 1.5090 -1.7408 1.1754 27 1 1.7976 -0.2248 2.0627 28 1 3.9910 0.0192 0.9322 29 1 3.7023 -1.4966 0.0449 30 1 2.4647 -2.7403 3.1098 31 1 2.7526 -3.2685 1.4246 32 1 4.4452 -3.8542 3.9167 33 1 3.8769 -5.0016 2.6584 34 1 6.3097 -7.2769 2.6619 35 1 5.7366 -1.8264 0.8687 36 1 6.0799 -1.6689 2.6128 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000084447003.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:34 Heat of formation + Delta-G solvation = -14.718359 kcal Electronic energy + Delta-G solvation = -14470.112775 eV Core-core repulsion = 12181.161613 eV Total energy + Delta-G solvation = -2288.951162 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.05590 -38.13062 -35.12433 -32.76025 -30.08719 -29.29379 -28.45127 -26.26751 -24.61760 -22.56011 -21.35978 -20.96526 -18.58772 -17.11624 -16.65730 -16.50908 -16.22967 -15.51118 -15.27623 -14.80727 -14.38147 -13.99805 -13.54789 -13.49589 -13.12742 -12.98570 -12.73082 -12.64574 -12.55319 -12.45449 -12.19198 -11.89055 -11.75677 -11.55015 -11.17073 -10.91934 -10.48705 -9.33242 -9.16172 -8.14027 -6.23912 1.42702 1.44349 1.51969 2.43476 2.81428 3.17356 3.44204 3.90294 4.11909 4.16098 4.30942 4.34054 4.49491 4.50856 4.56173 4.60812 4.67929 4.72768 4.86415 4.94190 4.96950 5.00685 5.02184 5.08462 5.26442 5.34896 5.57217 5.70670 5.86718 5.97250 6.08978 6.14795 6.30857 6.36597 6.84529 7.43581 8.95663 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.077558 B = 0.005879 C = 0.005640 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 360.932348 B = 4761.249248 C = 4963.768649 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.565 5.565 3 C 0.021 3.979 4 C 0.064 3.936 5 C 0.059 3.941 6 N -0.534 5.534 7 C 0.049 3.951 8 C -0.100 4.100 9 C 0.026 3.974 10 H -0.002 1.002 11 C -0.531 4.531 12 H 0.057 0.943 13 C 0.013 3.987 14 N -0.921 5.921 15 Si 0.957 3.043 16 H -0.270 1.270 17 H -0.284 1.284 18 H -0.270 1.270 19 C 0.060 3.940 20 H 0.030 0.970 21 H 0.082 0.918 22 H 0.067 0.933 23 H 0.066 0.934 24 H 0.081 0.919 25 H 0.029 0.971 26 H 0.072 0.928 27 H 0.041 0.959 28 H 0.078 0.922 29 H 0.025 0.975 30 H 0.083 0.917 31 H 0.040 0.960 32 H 0.042 0.958 33 H 0.046 0.954 34 H 0.261 0.739 35 H 0.041 0.959 36 H 0.064 0.936 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.308 11.720 -3.111 15.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.290 5.290 3 C -0.127 4.127 4 C -0.064 4.064 5 C -0.069 4.069 6 N -0.259 5.259 7 C -0.078 4.078 8 C -0.139 4.139 9 C 0.007 3.993 10 H 0.016 0.984 11 C -0.570 4.570 12 H 0.075 0.925 13 C -0.186 4.186 14 N -0.560 5.560 15 Si 0.783 3.217 16 H -0.195 1.195 17 H -0.210 1.210 18 H -0.195 1.195 19 C -0.068 4.068 20 H 0.048 0.952 21 H 0.101 0.899 22 H 0.086 0.914 23 H 0.084 0.916 24 H 0.100 0.900 25 H 0.048 0.952 26 H 0.090 0.910 27 H 0.060 0.940 28 H 0.096 0.904 29 H 0.043 0.957 30 H 0.101 0.899 31 H 0.058 0.942 32 H 0.061 0.939 33 H 0.064 0.936 34 H 0.070 0.930 35 H 0.059 0.941 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.217 11.651 -3.126 15.181 hybrid contribution 0.649 -0.839 0.376 1.125 sum -8.568 10.812 -2.750 14.067 Atomic orbital electron populations 1.22413 0.85917 1.02661 1.01234 1.61927 1.09203 1.14865 1.42973 1.22477 1.01009 0.88030 1.01140 1.22056 0.94127 0.98481 0.91720 1.22236 0.95206 0.98339 0.91144 1.63693 1.02430 1.20980 1.38788 1.23027 0.96046 0.89460 0.99280 1.22485 0.95848 0.96745 0.98826 1.19822 0.94358 0.90970 0.94193 0.98427 1.21405 1.05561 0.92286 1.37708 0.92528 1.25783 0.99713 0.96788 0.96309 1.70078 1.37238 1.01121 1.47574 0.85621 0.79928 0.76910 0.79268 1.19505 1.20985 1.19530 1.22770 0.89016 0.96270 0.98743 0.95183 0.89918 0.91426 0.91551 0.89987 0.95219 0.91003 0.94039 0.90377 0.95658 0.89901 0.94212 0.93900 0.93555 0.92999 0.94090 0.91804 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.47 9.57 127.69 1.22 1.70 16 2 N -0.56 -13.32 5.02 -948.87 -4.76 -18.08 16 3 C 0.02 0.42 9.32 127.69 1.19 1.61 16 4 C 0.06 1.73 4.62 86.30 0.40 2.13 16 5 C 0.06 1.88 4.75 86.30 0.41 2.29 16 6 N -0.53 -20.31 5.31 -885.52 -4.71 -25.01 16 7 C 0.05 1.90 5.31 86.78 0.46 2.36 16 8 C -0.10 -4.84 5.96 32.07 0.19 -4.65 16 9 C 0.03 1.35 2.79 -10.27 -0.03 1.32 16 10 H 0.00 -0.14 8.14 -2.38 -0.02 -0.16 16 11 C -0.53 -29.89 8.47 25.60 0.22 -29.67 16 12 H 0.06 3.10 7.53 -2.91 -0.02 3.08 16 13 C 0.01 0.73 5.36 84.66 0.45 1.18 16 14 N -0.92 -54.33 12.51 21.45 0.27 -54.06 16 15 Si 0.96 44.03 29.54 68.60 2.03 46.06 16 16 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 17 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 18 H -0.27 -12.04 7.11 99.48 0.71 -11.33 16 19 C 0.06 2.60 6.45 86.65 0.56 3.16 16 20 H 0.03 0.52 8.14 -2.39 -0.02 0.50 16 21 H 0.08 1.25 8.12 -2.39 -0.02 1.23 16 22 H 0.07 1.24 8.12 -2.39 -0.02 1.22 16 23 H 0.07 1.36 6.47 -2.39 -0.02 1.35 16 24 H 0.08 1.31 8.12 -2.39 -0.02 1.29 16 25 H 0.03 0.55 8.14 -2.38 -0.02 0.53 16 26 H 0.07 2.00 6.40 -2.39 -0.02 1.98 16 27 H 0.04 1.11 8.12 -2.39 -0.02 1.09 16 28 H 0.08 2.30 6.55 -2.38 -0.02 2.29 16 29 H 0.03 0.88 7.96 -2.39 -0.02 0.86 16 30 H 0.08 2.83 8.14 -2.39 -0.02 2.81 16 31 H 0.04 1.50 7.02 -2.39 -0.02 1.48 16 32 H 0.04 2.14 8.04 -2.39 -0.02 2.12 16 33 H 0.05 2.40 7.78 -2.39 -0.02 2.38 16 34 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 35 H 0.04 1.69 7.49 -2.39 -0.02 1.68 16 36 H 0.06 2.83 7.63 -2.39 -0.02 2.81 16 Total: -1.00 -60.94 282.53 -1.08 -62.02 By element: Atomic # 1 Polarization: 6.62 SS G_CDS: 1.02 Total: 7.64 kcal Atomic # 6 Polarization: -23.64 SS G_CDS: 5.07 Total: -18.57 kcal Atomic # 7 Polarization: -87.95 SS G_CDS: -9.20 Total: -97.15 kcal Atomic # 14 Polarization: 44.03 SS G_CDS: 2.03 Total: 46.06 kcal Total: -60.94 -1.08 -62.02 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000084447003.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.304 kcal (2) G-P(sol) polarization free energy of solvation -60.942 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.638 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.081 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.022 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds