Wall clock time and date at job start Mon Mar 30 2020 02:21:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.47097 * 2 1 4 4 C 1.46896 * 111.00022 * 165.19591 * 3 2 1 5 5 C 1.52996 * 109.47324 * 287.67146 * 4 3 2 6 6 C 1.52994 * 109.47685 * 183.48703 * 5 4 3 7 7 C 1.50698 * 109.47914 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99417 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00655 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99730 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00255 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46716 * 90.00453 * 11 9 7 13 13 H 1.48502 * 109.46841 * 210.00386 * 11 9 7 14 14 H 1.48501 * 109.46901 * 330.00248 * 11 9 7 15 15 C 1.46898 * 111.00136 * 289.15092 * 3 2 1 16 16 C 1.53510 * 114.16975 * 75.09926 * 15 3 2 17 17 N 1.47481 * 87.93320 * 220.32781 * 16 15 3 18 18 C 1.47481 * 87.83558 * 27.01295 * 17 16 15 19 19 H 1.08997 * 109.46860 * 190.47975 * 1 2 3 20 20 H 1.09003 * 109.46993 * 310.47620 * 1 2 3 21 21 H 1.08997 * 109.47415 * 70.47546 * 1 2 3 22 22 H 1.09007 * 109.46705 * 240.00539 * 2 1 3 23 23 H 1.08994 * 109.47381 * 119.99960 * 2 1 3 24 24 H 1.09009 * 109.47156 * 47.66688 * 4 3 2 25 25 H 1.08995 * 109.47356 * 167.66752 * 4 3 2 26 26 H 1.09000 * 109.47089 * 303.48962 * 5 4 3 27 27 H 1.09004 * 109.47475 * 63.48100 * 5 4 3 28 28 H 1.09004 * 109.47363 * 299.99859 * 6 5 4 29 29 H 1.09004 * 109.47156 * 59.99201 * 6 5 4 30 30 H 0.97003 * 120.00186 * 179.97438 * 10 9 7 31 31 H 1.08996 * 113.38507 * 208.18025 * 15 3 2 32 32 H 1.08994 * 113.47703 * 105.56529 * 16 15 3 33 33 H 1.08999 * 113.53562 * 335.10028 * 16 15 3 34 34 H 1.00900 * 110.99962 * 138.70278 * 17 16 15 35 35 H 1.09004 * 113.47960 * 87.75251 * 18 17 16 36 36 H 1.08999 * 113.47767 * 218.22126 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4452 1.4394 0.3504 5 6 3.6158 1.1394 1.8409 6 6 5.0902 1.2812 2.2243 7 6 5.2582 0.9863 3.6926 8 1 4.3993 0.7235 4.2922 9 6 6.5085 1.0509 4.2701 10 7 7.5545 1.3704 3.5397 11 14 6.7165 0.6860 6.0903 12 1 6.9778 -0.7637 6.2777 13 1 7.8602 1.4683 6.6244 14 1 5.4769 1.0635 6.8157 15 6 1.7710 2.0314 -1.2955 16 6 0.3072 2.4312 -1.5277 17 7 0.4597 1.9755 -2.9221 18 6 1.5056 1.0508 -2.4465 19 1 -0.3633 -1.0105 0.1869 20 1 -0.3633 0.6671 0.7817 21 1 -0.3634 0.3434 -0.9685 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 3.9916 0.6990 -0.2341 25 1 3.8352 2.4337 0.1330 26 1 3.0197 1.8418 2.4235 27 1 3.2830 0.1221 2.0473 28 1 5.6863 0.5787 1.6418 29 1 5.4230 2.2984 2.0179 30 1 8.4341 1.4162 3.9461 31 1 2.4907 2.8146 -1.5335 32 1 0.1304 3.5030 -1.4382 33 1 -0.4028 1.8374 -0.9521 34 1 -0.3578 1.4697 -3.2286 35 1 1.1163 0.0879 -2.1156 36 1 2.3445 0.9527 -3.1355 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085259350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:04 Heat of formation + Delta-G solvation = 43.001382 kcal Electronic energy + Delta-G solvation = -14383.300946 eV Core-core repulsion = 12096.852700 eV Total energy + Delta-G solvation = -2286.448246 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -40.52998 -36.21355 -33.59535 -31.77130 -30.19917 -27.13255 -26.12317 -25.17117 -22.98891 -21.74392 -19.84539 -19.37577 -17.17011 -16.38430 -15.88073 -14.63942 -14.61628 -14.43340 -13.90637 -13.40215 -13.14460 -12.71054 -12.37655 -12.28078 -11.98521 -11.51467 -11.19653 -11.09820 -10.89498 -10.75747 -10.68292 -10.47498 -10.36282 -9.57888 -9.31586 -9.06960 -8.95844 -8.31983 -8.05407 -5.97356 -3.99324 3.33631 3.39762 3.43584 3.86760 4.30706 4.48554 4.58680 4.83647 5.04343 5.19270 5.26185 5.32052 5.38507 5.50866 5.59716 5.65241 5.69153 5.88369 5.90412 5.94812 5.98932 6.09292 6.24450 6.33750 6.71382 6.80524 7.07334 7.15373 7.33985 7.40821 7.71299 7.86424 8.03288 8.46704 9.07938 9.64597 11.14127 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.063231 B = 0.005449 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.717952 B = 5137.572012 C = 5367.523165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.039 3.961 3 N -0.525 5.525 4 C 0.056 3.944 5 C -0.103 4.103 6 C 0.021 3.979 7 C -0.518 4.518 8 H 0.055 0.945 9 C 0.056 3.944 10 N -0.897 5.897 11 Si 0.891 3.109 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 C 0.062 3.938 16 C -0.010 4.010 17 N -0.628 5.628 18 C -0.043 4.043 19 H 0.055 0.945 20 H 0.068 0.932 21 H 0.054 0.946 22 H 0.040 0.960 23 H 0.083 0.917 24 H 0.030 0.970 25 H 0.070 0.930 26 H 0.056 0.944 27 H 0.045 0.955 28 H 0.013 0.987 29 H 0.016 0.984 30 H 0.260 0.740 31 H 0.108 0.892 32 H 0.081 0.919 33 H 0.088 0.912 34 H 0.315 0.685 35 H 0.082 0.918 36 H 0.078 0.922 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.457 -1.680 -9.833 16.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.089 4.089 3 N -0.247 5.247 4 C -0.071 4.071 5 C -0.141 4.141 6 C -0.016 4.016 7 C -0.556 4.556 8 H 0.073 0.927 9 C -0.145 4.145 10 N -0.536 5.536 11 Si 0.719 3.281 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 C -0.048 4.048 16 C -0.141 4.141 17 N -0.252 5.252 18 C -0.174 4.174 19 H 0.074 0.926 20 H 0.087 0.913 21 H 0.072 0.928 22 H 0.058 0.942 23 H 0.101 0.899 24 H 0.049 0.951 25 H 0.089 0.911 26 H 0.074 0.926 27 H 0.064 0.936 28 H 0.031 0.969 29 H 0.034 0.966 30 H 0.069 0.931 31 H 0.126 0.874 32 H 0.099 0.901 33 H 0.106 0.894 34 H 0.127 0.873 35 H 0.100 0.900 36 H 0.097 0.903 Dipole moment (debyes) X Y Z Total from point charges -13.140 -0.741 -9.923 16.483 hybrid contribution 0.244 -1.379 0.832 1.629 sum -12.897 -2.120 -9.091 15.921 Atomic orbital electron populations 1.22192 0.95802 1.01671 1.01798 1.22283 0.95383 0.89609 1.01579 1.62093 1.19044 1.16421 1.27189 1.22342 0.85232 1.00897 0.98645 1.21641 1.00491 1.00080 0.91889 1.19078 0.89334 0.97093 0.96136 1.21251 0.93251 1.46462 0.94643 0.92708 1.25025 0.96102 0.95411 0.97961 1.69969 0.99054 1.48886 1.35730 0.86604 0.77711 0.78219 0.85535 1.20728 1.21240 1.19857 1.23372 0.97316 0.97136 0.87022 1.24265 0.97943 1.02396 0.89472 1.67244 1.10563 1.27665 1.19756 1.24521 0.97475 0.97275 0.98174 0.92573 0.91269 0.92780 0.94165 0.89853 0.95142 0.91133 0.92554 0.93631 0.96861 0.96591 0.93058 0.87418 0.90078 0.89445 0.87278 0.89974 0.90336 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.66 8.19 37.16 0.30 -1.35 16 2 C 0.04 0.51 5.06 -3.82 -0.02 0.49 16 3 N -0.52 -7.70 4.57 -226.32 -1.03 -8.74 16 4 C 0.06 0.97 4.95 -3.83 -0.02 0.95 16 5 C -0.10 -2.15 5.16 -26.74 -0.14 -2.29 16 6 C 0.02 0.55 4.97 -27.89 -0.14 0.41 16 7 C -0.52 -14.84 9.11 -34.44 -0.31 -15.16 16 8 H 0.05 1.53 7.74 -52.49 -0.41 1.12 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 10 N -0.90 -27.23 13.29 55.43 0.74 -26.49 16 11 Si 0.89 21.85 29.54 -169.99 -5.02 16.82 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 14 H -0.27 -6.57 7.11 56.52 0.40 -6.17 16 15 C 0.06 0.80 4.34 -67.50 -0.29 0.51 16 16 C -0.01 -0.12 7.82 -7.55 -0.06 -0.18 16 17 N -0.63 -6.96 8.71 -122.66 -1.07 -8.03 16 18 C -0.04 -0.49 7.12 -7.54 -0.05 -0.54 16 19 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 20 H 0.07 0.78 8.02 -51.93 -0.42 0.37 16 21 H 0.05 0.51 4.33 -51.93 -0.23 0.29 16 22 H 0.04 0.50 5.79 -51.92 -0.30 0.20 16 23 H 0.08 1.19 6.39 -51.93 -0.33 0.86 16 24 H 0.03 0.53 8.05 -51.92 -0.42 0.11 16 25 H 0.07 1.24 7.72 -51.93 -0.40 0.83 16 26 H 0.06 1.20 8.14 -51.93 -0.42 0.78 16 27 H 0.04 0.93 6.69 -51.93 -0.35 0.58 16 28 H 0.01 0.36 8.14 -51.93 -0.42 -0.06 16 29 H 0.02 0.44 8.14 -51.93 -0.42 0.01 16 30 H 0.26 7.43 8.31 -40.82 -0.34 7.09 16 31 H 0.11 1.47 7.68 -51.93 -0.40 1.07 16 32 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.09 0.92 4.42 -51.93 -0.23 0.69 16 34 H 0.32 2.89 8.91 -39.29 -0.35 2.54 16 35 H 0.08 0.87 4.30 -51.93 -0.22 0.65 16 36 H 0.08 0.92 8.14 -51.93 -0.42 0.50 16 LS Contribution 276.81 15.07 4.17 4.17 Total: -1.00 -29.98 276.81 -8.76 -38.74 By element: Atomic # 1 Polarization: 4.87 SS G_CDS: -5.72 Total: -0.85 kcal Atomic # 6 Polarization: -14.81 SS G_CDS: -0.83 Total: -15.63 kcal Atomic # 7 Polarization: -41.89 SS G_CDS: -1.37 Total: -43.26 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.82 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -29.98 -8.76 -38.74 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085259350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 81.742 kcal (2) G-P(sol) polarization free energy of solvation -29.979 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 51.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.741 kcal (6) G-S(sol) free energy of system = (1) + (5) 43.001 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds