Wall clock time and date at job start Mon Mar 30 2020 02:21:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46904 * 109.47097 * 2 1 4 4 C 1.46896 * 111.00022 * 165.19591 * 3 2 1 5 5 C 1.52996 * 109.47324 * 287.67146 * 4 3 2 6 6 C 1.52994 * 109.47685 * 183.48703 * 5 4 3 7 7 C 1.50698 * 109.47914 * 179.97438 * 6 5 4 8 8 H 1.08001 * 119.99417 * 0.02562 * 7 6 5 9 9 C 1.37873 * 120.00655 * 179.97438 * 7 6 5 10 10 N 1.31517 * 119.99730 * 0.02562 * 9 7 6 11 11 Si 1.86803 * 120.00255 * 179.97438 * 9 7 6 12 12 H 1.48495 * 109.46716 * 90.00453 * 11 9 7 13 13 H 1.48502 * 109.46841 * 210.00386 * 11 9 7 14 14 H 1.48501 * 109.46901 * 330.00248 * 11 9 7 15 15 C 1.46898 * 111.00136 * 289.15092 * 3 2 1 16 16 C 1.53510 * 114.16975 * 75.09926 * 15 3 2 17 17 N 1.47481 * 87.93320 * 220.32781 * 16 15 3 18 18 C 1.47481 * 87.83558 * 27.01295 * 17 16 15 19 19 H 1.08997 * 109.46860 * 190.47975 * 1 2 3 20 20 H 1.09003 * 109.46993 * 310.47620 * 1 2 3 21 21 H 1.08997 * 109.47415 * 70.47546 * 1 2 3 22 22 H 1.09007 * 109.46705 * 240.00539 * 2 1 3 23 23 H 1.08994 * 109.47381 * 119.99960 * 2 1 3 24 24 H 1.09009 * 109.47156 * 47.66688 * 4 3 2 25 25 H 1.08995 * 109.47356 * 167.66752 * 4 3 2 26 26 H 1.09000 * 109.47089 * 303.48962 * 5 4 3 27 27 H 1.09004 * 109.47475 * 63.48100 * 5 4 3 28 28 H 1.09004 * 109.47363 * 299.99859 * 6 5 4 29 29 H 1.09004 * 109.47156 * 59.99201 * 6 5 4 30 30 H 0.97003 * 120.00186 * 179.97438 * 10 9 7 31 31 H 1.08996 * 113.38507 * 208.18025 * 15 3 2 32 32 H 1.08994 * 113.47703 * 105.56529 * 16 15 3 33 33 H 1.08999 * 113.53562 * 335.10028 * 16 15 3 34 34 H 1.00900 * 110.99962 * 138.70278 * 17 16 15 35 35 H 1.09004 * 113.47960 * 87.75251 * 18 17 16 36 36 H 1.08999 * 113.47767 * 218.22126 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4452 1.4394 0.3504 5 6 3.6158 1.1394 1.8409 6 6 5.0902 1.2812 2.2243 7 6 5.2582 0.9863 3.6926 8 1 4.3993 0.7235 4.2922 9 6 6.5085 1.0509 4.2701 10 7 7.5545 1.3704 3.5397 11 14 6.7165 0.6860 6.0903 12 1 6.9778 -0.7637 6.2777 13 1 7.8602 1.4683 6.6244 14 1 5.4769 1.0635 6.8157 15 6 1.7710 2.0314 -1.2955 16 6 0.3072 2.4312 -1.5277 17 7 0.4597 1.9755 -2.9221 18 6 1.5056 1.0508 -2.4465 19 1 -0.3633 -1.0105 0.1869 20 1 -0.3633 0.6671 0.7817 21 1 -0.3634 0.3434 -0.9685 22 1 1.8933 -0.5138 -0.8901 23 1 1.8934 -0.5138 0.8899 24 1 3.9916 0.6990 -0.2341 25 1 3.8352 2.4337 0.1330 26 1 3.0197 1.8418 2.4235 27 1 3.2830 0.1221 2.0473 28 1 5.6863 0.5787 1.6418 29 1 5.4230 2.2984 2.0179 30 1 8.4341 1.4162 3.9461 31 1 2.4907 2.8146 -1.5335 32 1 0.1304 3.5030 -1.4382 33 1 -0.4028 1.8374 -0.9521 34 1 -0.3578 1.4697 -3.2286 35 1 1.1163 0.0879 -2.1156 36 1 2.3445 0.9527 -3.1355 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085259350.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:21:03 Heat of formation + Delta-G solvation = 20.618476 kcal Electronic energy + Delta-G solvation = -14384.271542 eV Core-core repulsion = 12096.852700 eV Total energy + Delta-G solvation = -2287.418841 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.52215 -37.50328 -35.49446 -33.45886 -31.50897 -28.66695 -27.10675 -26.56692 -24.48295 -23.14372 -21.49521 -20.34226 -18.52879 -18.14177 -17.03635 -16.48729 -16.07184 -15.69196 -15.04636 -14.58531 -14.35398 -14.05630 -13.95690 -13.63014 -13.33496 -12.88870 -12.80251 -12.55529 -12.43088 -12.20426 -12.08900 -11.87359 -11.60700 -11.35963 -11.25652 -11.02681 -10.54270 -9.86493 -9.21148 -8.19553 -6.30627 1.40379 1.41954 1.53298 2.41373 2.78863 3.13616 3.35342 3.60068 3.87561 4.02451 4.20067 4.30649 4.33281 4.39694 4.49080 4.62582 4.68920 4.74015 4.75431 4.82121 4.99459 5.03847 5.06839 5.10705 5.13380 5.27978 5.37391 5.53011 5.75179 5.86717 6.11193 6.18096 6.28184 6.31877 6.86276 7.38690 8.92431 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.063231 B = 0.005449 C = 0.005215 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 442.717952 B = 5137.572012 C = 5367.523165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.035 3.965 3 N -0.529 5.529 4 C 0.068 3.932 5 C -0.086 4.086 6 C 0.025 3.975 7 C -0.542 4.542 8 H 0.059 0.941 9 C -0.001 4.001 10 N -0.934 5.934 11 Si 0.965 3.035 12 H -0.271 1.271 13 H -0.282 1.282 14 H -0.263 1.263 15 C 0.049 3.951 16 C -0.002 4.002 17 N -0.633 5.633 18 C -0.035 4.035 19 H 0.072 0.928 20 H 0.061 0.939 21 H 0.067 0.933 22 H 0.049 0.951 23 H 0.067 0.933 24 H 0.028 0.972 25 H 0.064 0.936 26 H 0.050 0.950 27 H 0.049 0.951 28 H -0.010 1.010 29 H -0.009 1.009 30 H 0.263 0.737 31 H 0.096 0.904 32 H 0.080 0.920 33 H 0.100 0.900 34 H 0.330 0.670 35 H 0.095 0.905 36 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.062 -2.358 -9.645 18.040 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.093 4.093 3 N -0.252 5.252 4 C -0.060 4.060 5 C -0.124 4.124 6 C -0.013 4.013 7 C -0.580 4.580 8 H 0.077 0.923 9 C -0.198 4.198 10 N -0.575 5.575 11 Si 0.790 3.210 12 H -0.197 1.197 13 H -0.207 1.207 14 H -0.188 1.188 15 C -0.061 4.061 16 C -0.132 4.132 17 N -0.259 5.259 18 C -0.166 4.166 19 H 0.091 0.909 20 H 0.080 0.920 21 H 0.086 0.914 22 H 0.067 0.933 23 H 0.085 0.915 24 H 0.046 0.954 25 H 0.082 0.918 26 H 0.069 0.931 27 H 0.068 0.932 28 H 0.009 0.991 29 H 0.009 0.991 30 H 0.072 0.928 31 H 0.114 0.886 32 H 0.099 0.901 33 H 0.118 0.882 34 H 0.143 0.857 35 H 0.112 0.888 36 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -14.775 -1.425 -9.751 17.760 hybrid contribution 0.744 -1.158 0.721 1.554 sum -14.031 -2.584 -9.030 16.885 Atomic orbital electron populations 1.22128 0.93556 1.02697 1.02326 1.22381 0.97194 0.88457 1.01236 1.62051 1.16694 1.17766 1.28657 1.22038 0.87456 1.00384 0.96133 1.21366 0.96594 1.00158 0.94288 1.18981 0.92419 0.94761 0.95117 1.21686 0.93722 1.46661 0.95941 0.92304 1.25987 0.95687 0.94951 1.03213 1.70101 0.99653 1.49706 1.38018 0.85443 0.78003 0.78396 0.79187 1.19676 1.20704 1.18766 1.23436 0.98392 0.97538 0.86746 1.24216 0.96644 1.02642 0.89688 1.67206 1.11226 1.27902 1.19528 1.24457 0.97578 0.97409 0.97170 0.90888 0.91959 0.91426 0.93255 0.91471 0.95382 0.91766 0.93092 0.93203 0.99145 0.99093 0.92778 0.88582 0.90146 0.88250 0.85659 0.88753 0.90730 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.76 8.19 71.98 0.59 -2.17 16 2 C 0.03 0.85 5.06 86.30 0.44 1.28 16 3 N -0.53 -15.07 4.57 -869.95 -3.97 -19.04 16 4 C 0.07 2.37 4.95 86.30 0.43 2.80 16 5 C -0.09 -3.64 5.16 30.59 0.16 -3.48 16 6 C 0.02 1.34 4.97 29.85 0.15 1.49 16 7 C -0.54 -31.49 9.11 25.60 0.23 -31.26 16 8 H 0.06 3.29 7.74 -2.91 -0.02 3.26 16 9 C 0.00 -0.05 5.46 84.65 0.46 0.41 16 10 N -0.93 -57.66 13.29 21.45 0.28 -57.37 16 11 Si 0.97 44.74 29.54 68.60 2.03 46.76 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.73 7.11 99.48 0.71 -12.03 16 14 H -0.26 -11.68 7.11 99.48 0.71 -10.97 16 15 C 0.05 1.21 4.34 45.37 0.20 1.40 16 16 C 0.00 -0.03 7.82 83.57 0.65 0.62 16 17 N -0.63 -12.53 8.71 -541.99 -4.72 -17.25 16 18 C -0.03 -0.72 7.12 83.58 0.59 -0.13 16 19 H 0.07 1.12 8.14 -2.39 -0.02 1.10 16 20 H 0.06 1.26 8.02 -2.39 -0.02 1.24 16 21 H 0.07 1.06 4.33 -2.39 -0.01 1.05 16 22 H 0.05 1.12 5.79 -2.38 -0.01 1.10 16 23 H 0.07 1.86 6.39 -2.39 -0.02 1.84 16 24 H 0.03 0.99 8.05 -2.38 -0.02 0.97 16 25 H 0.06 2.31 7.72 -2.39 -0.02 2.29 16 26 H 0.05 2.19 8.14 -2.39 -0.02 2.17 16 27 H 0.05 2.05 6.69 -2.38 -0.02 2.03 16 28 H -0.01 -0.57 8.14 -2.39 -0.02 -0.59 16 29 H -0.01 -0.54 8.14 -2.38 -0.02 -0.56 16 30 H 0.26 15.23 8.31 -92.71 -0.77 14.45 16 31 H 0.10 2.61 7.68 -2.39 -0.02 2.59 16 32 H 0.08 1.69 8.14 -2.39 -0.02 1.67 16 33 H 0.10 1.81 4.42 -2.39 -0.01 1.80 16 34 H 0.33 5.06 8.91 -89.69 -0.80 4.26 16 35 H 0.09 1.74 4.30 -2.39 -0.01 1.73 16 36 H 0.07 1.63 8.14 -2.39 -0.02 1.61 16 Total: -1.00 -64.09 276.81 -2.22 -66.31 By element: Atomic # 1 Polarization: 9.37 SS G_CDS: 0.26 Total: 9.63 kcal Atomic # 6 Polarization: -32.93 SS G_CDS: 3.90 Total: -29.03 kcal Atomic # 7 Polarization: -85.26 SS G_CDS: -8.41 Total: -93.67 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.76 kcal Total: -64.09 -2.22 -66.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085259350.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 86.928 kcal (2) G-P(sol) polarization free energy of solvation -64.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.840 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.222 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 20.618 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds