Wall clock time and date at job start Mon Mar 30 2020 02:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 110.99511 * 2 1 4 4 C 1.52995 * 109.47148 * 84.99940 * 3 2 1 5 5 C 1.52998 * 109.47365 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47120 * 300.00414 * 5 4 3 7 7 N 1.46507 * 109.47153 * 179.97438 * 6 5 4 8 8 C 1.46508 * 119.99514 * 299.99574 * 7 6 5 9 9 C 1.36935 * 120.00130 * 119.99729 * 7 6 5 10 10 H 1.07996 * 119.99911 * 23.09389 * 9 7 6 11 11 C 1.38809 * 119.99611 * 203.08915 * 9 7 6 12 12 N 1.31622 * 120.00431 * 11.66728 * 11 9 7 13 13 Si 1.86797 * 119.99738 * 191.66282 * 11 9 7 14 14 H 1.48497 * 109.47493 * 60.00374 * 13 11 9 15 15 H 1.48505 * 109.47205 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47250 * 300.00111 * 13 11 9 17 17 C 1.52995 * 109.47340 * 59.99571 * 6 5 4 18 18 C 1.52999 * 109.46458 * 204.99837 * 3 2 1 19 19 H 1.08998 * 109.47525 * 300.00045 * 1 2 3 20 20 H 1.09009 * 109.47051 * 60.00191 * 1 2 3 21 21 H 1.09005 * 109.47019 * 180.02562 * 1 2 3 22 22 H 1.00892 * 111.00029 * 123.95008 * 2 1 3 23 23 H 1.09003 * 109.47038 * 324.99726 * 3 2 1 24 24 H 1.09002 * 109.47329 * 59.99406 * 4 3 2 25 25 H 1.08998 * 109.47105 * 299.99772 * 4 3 2 26 26 H 1.08993 * 109.47523 * 179.97438 * 5 4 3 27 27 H 1.09003 * 109.46451 * 60.00013 * 5 4 3 28 28 H 1.09003 * 109.47131 * 299.99182 * 6 5 4 29 29 H 1.08997 * 109.46584 * 93.88751 * 8 7 6 30 30 H 1.08993 * 109.46977 * 213.88027 * 8 7 6 31 31 H 1.08997 * 109.47286 * 333.89018 * 8 7 6 32 32 H 0.97000 * 120.00339 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.47329 * 60.00287 * 17 6 5 34 34 H 1.08998 * 109.47105 * 179.97438 * 17 6 5 35 35 H 1.08991 * 109.47266 * 60.00438 * 18 3 2 36 36 H 1.09003 * 109.47406 * 299.99664 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 2.0607 1.8927 1.4370 5 6 2.6095 3.3209 1.4371 6 6 4.0128 3.3281 0.8276 7 7 4.5380 4.6958 0.8272 8 6 3.8304 5.7518 0.0988 9 6 5.6902 4.9869 1.5074 10 1 6.4029 4.2044 1.7223 11 6 5.9422 6.2879 1.9207 12 7 4.9871 7.1920 1.8678 13 14 7.6369 6.7556 2.5520 14 1 8.6451 6.5155 1.4885 15 1 7.6460 8.1922 2.9280 16 1 7.9668 5.9308 3.7421 17 6 3.9474 2.8069 -0.6093 18 6 3.3986 1.3791 -0.6096 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 1.8306 -0.5260 0.7813 23 1 1.3396 2.0124 -0.5895 24 1 2.7164 1.2519 2.0265 25 1 1.0610 1.8873 1.8712 26 1 2.6556 3.6924 2.4607 27 1 1.9540 3.9619 0.8475 28 1 4.6682 2.6871 1.4172 29 1 3.1541 6.2710 0.7779 30 1 4.5528 6.4603 -0.3064 31 1 3.2579 5.3099 -0.7167 32 1 5.1633 8.1012 2.1562 33 1 3.2920 3.4480 -1.1989 34 1 4.9471 2.8124 -1.0436 35 1 3.3521 1.0078 -1.6333 36 1 4.0544 0.7383 -0.0201 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000085873487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:21 Heat of formation + Delta-G solvation = 7.887892 kcal Electronic energy + Delta-G solvation = -14876.211129 eV Core-core repulsion = 12588.240248 eV Total energy + Delta-G solvation = -2287.970881 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -38.72774 -35.78533 -33.44086 -30.79739 -30.23286 -27.80043 -25.91668 -24.58189 -22.44950 -22.05876 -20.48477 -18.81767 -16.67077 -15.81666 -15.07259 -14.65300 -14.08678 -13.87547 -13.58097 -13.29908 -12.67124 -12.42771 -12.30964 -11.95050 -11.71627 -11.35250 -11.08787 -10.82814 -10.65116 -10.56571 -10.51363 -10.23096 -10.12370 -9.81022 -9.66805 -9.42120 -8.47685 -8.28329 -6.65270 -5.65204 -3.10784 3.42279 3.47367 3.48500 4.30056 4.55254 5.02604 5.20401 5.33377 5.40897 5.43935 5.53241 5.73402 5.78036 5.79309 5.83939 5.95928 6.03477 6.19434 6.36680 6.39048 6.45895 6.50334 6.68214 6.77365 6.89230 7.09628 7.15441 7.17769 7.42887 7.48047 7.80511 7.86912 8.48513 9.32004 9.96382 10.46192 11.39647 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.062624 B = 0.006993 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.007906 B = 4003.070329 C = 4067.163437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 N -0.693 5.693 3 C 0.087 3.913 4 C -0.142 4.142 5 C -0.125 4.125 6 C 0.179 3.821 7 N -0.598 5.598 8 C 0.164 3.836 9 C -0.252 4.252 10 H 0.066 0.934 11 C 0.000 4.000 12 N -0.910 5.910 13 Si 0.904 3.096 14 H -0.285 1.285 15 H -0.291 1.291 16 H -0.284 1.284 17 C -0.131 4.131 18 C -0.100 4.100 19 H 0.021 0.979 20 H 0.062 0.938 21 H 0.062 0.938 22 H 0.339 0.661 23 H 0.073 0.927 24 H 0.059 0.941 25 H 0.049 0.951 26 H 0.060 0.940 27 H 0.053 0.947 28 H 0.059 0.941 29 H 0.025 0.975 30 H 0.041 0.959 31 H -0.002 1.002 32 H 0.251 0.749 33 H 0.056 0.944 34 H 0.061 0.939 35 H 0.059 0.941 36 H 0.057 0.943 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.741 -10.932 -3.086 13.208 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 N -0.322 5.322 3 C -0.023 4.023 4 C -0.182 4.182 5 C -0.165 4.165 6 C 0.071 3.929 7 N -0.320 5.320 8 C 0.020 3.980 9 C -0.381 4.381 10 H 0.084 0.916 11 C -0.198 4.198 12 N -0.556 5.556 13 Si 0.734 3.266 14 H -0.211 1.211 15 H -0.217 1.217 16 H -0.210 1.210 17 C -0.171 4.171 18 C -0.138 4.138 19 H 0.039 0.961 20 H 0.081 0.919 21 H 0.081 0.919 22 H 0.156 0.844 23 H 0.091 0.909 24 H 0.078 0.922 25 H 0.067 0.933 26 H 0.079 0.921 27 H 0.072 0.928 28 H 0.077 0.923 29 H 0.044 0.956 30 H 0.059 0.941 31 H 0.016 0.984 32 H 0.062 0.938 33 H 0.074 0.926 34 H 0.079 0.921 35 H 0.078 0.922 36 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges -6.685 -10.797 -3.735 13.237 hybrid contribution 0.586 0.712 1.391 1.669 sum -6.099 -10.085 -2.344 12.017 Atomic orbital electron populations 1.22190 0.88479 1.01232 1.00335 1.60608 1.07283 1.14679 1.49655 1.21674 0.96915 0.88046 0.95640 1.22218 1.00067 0.98891 0.97023 1.22020 0.98936 0.93896 1.01697 1.20333 0.92297 0.87445 0.92830 1.43954 1.26965 1.03366 1.57666 1.20723 0.95315 0.89904 0.92080 1.19201 0.95194 0.94027 1.29709 0.91605 1.25018 0.97617 0.97354 0.99810 1.70060 1.30620 1.03088 1.51799 0.86347 0.84272 0.77219 0.78760 1.21140 1.21701 1.21042 1.22054 1.00598 0.94496 0.99980 1.21440 0.94631 0.97432 1.00324 0.96063 0.91934 0.91945 0.84424 0.90863 0.92232 0.93257 0.92132 0.92772 0.92295 0.95623 0.94070 0.98373 0.93836 0.92574 0.92064 0.92222 0.92423 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.29 10.50 60.06 0.63 0.92 16 2 N -0.69 -8.42 6.60 -114.00 -0.75 -9.17 16 3 C 0.09 1.21 2.47 -67.71 -0.17 1.04 16 4 C -0.14 -2.10 5.17 -26.73 -0.14 -2.24 16 5 C -0.13 -2.34 5.20 -26.73 -0.14 -2.48 16 6 C 0.18 3.71 2.59 -67.93 -0.18 3.54 16 7 N -0.60 -15.24 2.81 -173.49 -0.49 -15.73 16 8 C 0.16 4.15 8.00 59.85 0.48 4.63 16 9 C -0.25 -7.04 9.59 -15.06 -0.14 -7.19 16 10 H 0.07 1.80 7.82 -52.49 -0.41 1.39 16 11 C 0.00 0.00 5.12 -17.43 -0.09 -0.09 16 12 N -0.91 -27.03 10.65 55.49 0.59 -26.44 16 13 Si 0.90 22.20 29.57 -169.99 -5.03 17.17 16 14 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 15 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 16 H -0.28 -6.87 7.11 56.52 0.40 -6.47 16 17 C -0.13 -2.34 5.19 -26.75 -0.14 -2.48 16 18 C -0.10 -1.47 5.53 -26.75 -0.15 -1.62 16 19 H 0.02 0.22 7.44 -51.93 -0.39 -0.17 16 20 H 0.06 0.65 8.06 -51.92 -0.42 0.23 16 21 H 0.06 0.55 8.14 -51.93 -0.42 0.13 16 22 H 0.34 3.76 8.56 -39.30 -0.34 3.42 16 23 H 0.07 1.07 7.80 -51.93 -0.40 0.67 16 24 H 0.06 0.86 8.13 -51.93 -0.42 0.44 16 25 H 0.05 0.69 7.45 -51.93 -0.39 0.30 16 26 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 27 H 0.05 1.04 7.67 -51.93 -0.40 0.64 16 28 H 0.06 1.25 7.87 -51.93 -0.41 0.85 16 29 H 0.03 0.70 7.42 -51.93 -0.39 0.31 16 30 H 0.04 1.12 7.23 -51.93 -0.38 0.74 16 31 H 0.00 -0.05 6.43 -51.93 -0.33 -0.38 16 32 H 0.25 7.26 8.31 -40.82 -0.34 6.92 16 33 H 0.06 1.02 6.66 -51.93 -0.35 0.67 16 34 H 0.06 1.14 8.14 -51.93 -0.42 0.72 16 35 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 36 H 0.06 0.84 8.14 -51.93 -0.42 0.41 16 LS Contribution 277.85 15.07 4.19 4.19 Total: -1.00 -29.41 277.85 -7.78 -37.19 By element: Atomic # 1 Polarization: 5.04 SS G_CDS: -6.26 Total: -1.22 kcal Atomic # 6 Polarization: -5.96 SS G_CDS: -0.03 Total: -5.99 kcal Atomic # 7 Polarization: -50.69 SS G_CDS: -0.65 Total: -51.34 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.03 Total: 17.17 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -29.41 -7.78 -37.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085873487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.077 kcal (2) G-P(sol) polarization free energy of solvation -29.409 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.668 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.189 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds