Wall clock time and date at job start Mon Mar 30 2020 02:37:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46907 * 110.99511 * 2 1 4 4 C 1.52995 * 109.47148 * 84.99940 * 3 2 1 5 5 C 1.52998 * 109.47365 * 179.97438 * 4 3 2 6 6 C 1.52995 * 109.47120 * 300.00414 * 5 4 3 7 7 N 1.46507 * 109.47153 * 179.97438 * 6 5 4 8 8 C 1.46508 * 119.99514 * 299.99574 * 7 6 5 9 9 C 1.36935 * 120.00130 * 119.99729 * 7 6 5 10 10 H 1.07996 * 119.99911 * 23.09389 * 9 7 6 11 11 C 1.38809 * 119.99611 * 203.08915 * 9 7 6 12 12 N 1.31622 * 120.00431 * 11.66728 * 11 9 7 13 13 Si 1.86797 * 119.99738 * 191.66282 * 11 9 7 14 14 H 1.48497 * 109.47493 * 60.00374 * 13 11 9 15 15 H 1.48505 * 109.47205 * 180.02562 * 13 11 9 16 16 H 1.48504 * 109.47250 * 300.00111 * 13 11 9 17 17 C 1.52995 * 109.47340 * 59.99571 * 6 5 4 18 18 C 1.52999 * 109.46458 * 204.99837 * 3 2 1 19 19 H 1.08998 * 109.47525 * 300.00045 * 1 2 3 20 20 H 1.09009 * 109.47051 * 60.00191 * 1 2 3 21 21 H 1.09005 * 109.47019 * 180.02562 * 1 2 3 22 22 H 1.00892 * 111.00029 * 123.95008 * 2 1 3 23 23 H 1.09003 * 109.47038 * 324.99726 * 3 2 1 24 24 H 1.09002 * 109.47329 * 59.99406 * 4 3 2 25 25 H 1.08998 * 109.47105 * 299.99772 * 4 3 2 26 26 H 1.08993 * 109.47523 * 179.97438 * 5 4 3 27 27 H 1.09003 * 109.46451 * 60.00013 * 5 4 3 28 28 H 1.09003 * 109.47131 * 299.99182 * 6 5 4 29 29 H 1.08997 * 109.46584 * 93.88751 * 8 7 6 30 30 H 1.08993 * 109.46977 * 213.88027 * 8 7 6 31 31 H 1.08997 * 109.47286 * 333.89018 * 8 7 6 32 32 H 0.97000 * 120.00339 * 180.02562 * 12 11 9 33 33 H 1.09002 * 109.47329 * 60.00287 * 17 6 5 34 34 H 1.08998 * 109.47105 * 179.97438 * 17 6 5 35 35 H 1.08991 * 109.47266 * 60.00438 * 18 3 2 36 36 H 1.09003 * 109.47406 * 299.99664 * 18 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 2.0607 1.8927 1.4370 5 6 2.6095 3.3209 1.4371 6 6 4.0128 3.3281 0.8276 7 7 4.5380 4.6958 0.8272 8 6 3.8304 5.7518 0.0988 9 6 5.6902 4.9869 1.5074 10 1 6.4029 4.2044 1.7223 11 6 5.9422 6.2879 1.9207 12 7 4.9871 7.1920 1.8678 13 14 7.6369 6.7556 2.5520 14 1 8.6451 6.5155 1.4885 15 1 7.6460 8.1922 2.9280 16 1 7.9668 5.9308 3.7421 17 6 3.9474 2.8069 -0.6093 18 6 3.3986 1.3791 -0.6096 19 1 -0.3634 0.5138 0.8899 20 1 -0.3633 0.5138 -0.8901 21 1 -0.3633 -1.0277 0.0005 22 1 1.8306 -0.5260 0.7813 23 1 1.3396 2.0124 -0.5895 24 1 2.7164 1.2519 2.0265 25 1 1.0610 1.8873 1.8712 26 1 2.6556 3.6924 2.4607 27 1 1.9540 3.9619 0.8475 28 1 4.6682 2.6871 1.4172 29 1 3.1541 6.2710 0.7779 30 1 4.5528 6.4603 -0.3064 31 1 3.2579 5.3099 -0.7167 32 1 5.1633 8.1012 2.1562 33 1 3.2920 3.4480 -1.1989 34 1 4.9471 2.8124 -1.0436 35 1 3.3521 1.0078 -1.6333 36 1 4.0544 0.7383 -0.0201 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000085873487.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:37:21 Heat of formation + Delta-G solvation = -11.156072 kcal Electronic energy + Delta-G solvation = -14877.036937 eV Core-core repulsion = 12588.240248 eV Total energy + Delta-G solvation = -2288.796689 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.10227 -37.36062 -35.01215 -32.66800 -31.60469 -29.25931 -28.01910 -25.80493 -24.12224 -23.42244 -21.83489 -20.38404 -18.74690 -17.15463 -16.82401 -15.89453 -15.56973 -15.28474 -15.16249 -14.74395 -14.19072 -14.04988 -13.82822 -13.14068 -13.09250 -12.92605 -12.72225 -12.65979 -12.38532 -12.21005 -12.13689 -11.93935 -11.73317 -11.60452 -11.21263 -11.00480 -10.59289 -9.28149 -8.73194 -7.80681 -5.28777 1.45831 1.48486 1.55056 2.51549 3.28546 3.32440 3.72833 3.80976 3.97645 4.28115 4.36796 4.43306 4.55187 4.60958 4.63063 4.67591 4.79852 4.82864 4.96022 5.02495 5.10221 5.14135 5.21484 5.28524 5.31046 5.35471 5.55582 5.63418 5.67523 5.74545 6.12253 6.35843 6.53654 7.17681 7.91806 8.35983 9.22424 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.062624 B = 0.006993 C = 0.006883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 447.007906 B = 4003.070329 C = 4067.163437 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 N -0.694 5.694 3 C 0.095 3.905 4 C -0.130 4.130 5 C -0.116 4.116 6 C 0.173 3.827 7 N -0.615 5.615 8 C 0.182 3.818 9 C -0.263 4.263 10 H 0.069 0.931 11 C -0.056 4.056 12 N -0.942 5.942 13 Si 0.969 3.031 14 H -0.278 1.278 15 H -0.294 1.294 16 H -0.275 1.275 17 C -0.120 4.120 18 C -0.091 4.091 19 H 0.022 0.978 20 H 0.061 0.939 21 H 0.080 0.920 22 H 0.347 0.653 23 H 0.069 0.931 24 H 0.066 0.934 25 H 0.063 0.937 26 H 0.032 0.968 27 H 0.046 0.954 28 H 0.051 0.949 29 H -0.002 1.002 30 H 0.013 0.987 31 H 0.028 0.972 32 H 0.247 0.753 33 H 0.052 0.948 34 H 0.051 0.949 35 H 0.072 0.928 36 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.986 -12.868 -3.391 15.029 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 N -0.323 5.323 3 C -0.015 4.015 4 C -0.170 4.170 5 C -0.156 4.156 6 C 0.066 3.934 7 N -0.337 5.337 8 C 0.037 3.963 9 C -0.393 4.393 10 H 0.086 0.914 11 C -0.250 4.250 12 N -0.589 5.589 13 Si 0.797 3.203 14 H -0.204 1.204 15 H -0.221 1.221 16 H -0.201 1.201 17 C -0.160 4.160 18 C -0.129 4.129 19 H 0.040 0.960 20 H 0.080 0.920 21 H 0.099 0.901 22 H 0.165 0.835 23 H 0.087 0.913 24 H 0.085 0.915 25 H 0.081 0.919 26 H 0.051 0.949 27 H 0.065 0.935 28 H 0.069 0.931 29 H 0.017 0.983 30 H 0.031 0.969 31 H 0.046 0.954 32 H 0.056 0.944 33 H 0.071 0.929 34 H 0.069 0.931 35 H 0.090 0.910 36 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -6.941 -12.786 -4.045 15.101 hybrid contribution 0.627 1.254 1.475 2.035 sum -6.314 -11.532 -2.571 13.397 Atomic orbital electron populations 1.22259 0.87240 1.02501 1.00342 1.60571 1.08435 1.13151 1.50154 1.21506 0.96361 0.89189 0.94472 1.22124 1.00647 0.95961 0.98279 1.21835 0.97702 0.96566 0.99499 1.20560 0.92947 0.84978 0.94873 1.44216 1.26827 1.05075 1.57588 1.20417 0.94152 0.89563 0.92144 1.19561 0.96261 0.94292 1.29229 0.91356 1.25802 1.01160 0.97404 1.00659 1.70236 1.32437 1.03063 1.53145 0.85309 0.80021 0.76518 0.78404 1.20443 1.22068 1.20124 1.21880 1.00268 0.96489 0.97322 1.21349 0.95147 0.95051 1.01381 0.95952 0.92035 0.90104 0.83528 0.91271 0.91486 0.91882 0.94915 0.93542 0.93052 0.98323 0.96867 0.95350 0.94394 0.92933 0.93062 0.90958 0.91834 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.46 10.50 127.69 1.34 1.80 16 2 N -0.69 -14.50 6.60 -514.59 -3.40 -17.90 16 3 C 0.09 2.37 2.47 44.91 0.11 2.48 16 4 C -0.13 -3.58 5.17 30.59 0.16 -3.42 16 5 C -0.12 -4.29 5.20 30.59 0.16 -4.13 16 6 C 0.17 7.10 2.59 44.99 0.12 7.22 16 7 N -0.61 -31.72 2.81 -702.78 -1.98 -33.70 16 8 C 0.18 9.39 8.00 127.77 1.02 10.41 16 9 C -0.26 -14.89 9.59 84.03 0.81 -14.08 16 10 H 0.07 3.74 7.82 -2.91 -0.02 3.72 16 11 C -0.06 -3.20 5.12 84.86 0.43 -2.77 16 12 N -0.94 -57.33 10.65 21.65 0.23 -57.10 16 13 Si 0.97 46.06 29.57 68.60 2.03 48.09 16 14 H -0.28 -12.82 7.11 99.48 0.71 -12.12 16 15 H -0.29 -14.05 7.11 99.48 0.71 -13.34 16 16 H -0.28 -12.60 7.11 99.48 0.71 -11.89 16 17 C -0.12 -4.11 5.19 30.58 0.16 -3.95 16 18 C -0.09 -2.44 5.53 30.58 0.17 -2.27 16 19 H 0.02 0.39 7.44 -2.39 -0.02 0.37 16 20 H 0.06 1.10 8.06 -2.38 -0.02 1.09 16 21 H 0.08 1.14 8.14 -2.38 -0.02 1.12 16 22 H 0.35 6.45 8.56 -89.70 -0.77 5.69 16 23 H 0.07 1.83 7.80 -2.39 -0.02 1.81 16 24 H 0.07 1.76 8.13 -2.39 -0.02 1.74 16 25 H 0.06 1.59 7.45 -2.39 -0.02 1.57 16 26 H 0.03 1.37 8.14 -2.39 -0.02 1.35 16 27 H 0.05 1.77 7.67 -2.39 -0.02 1.75 16 28 H 0.05 2.17 7.87 -2.39 -0.02 2.15 16 29 H 0.00 -0.09 7.42 -2.39 -0.02 -0.10 16 30 H 0.01 0.71 7.23 -2.39 -0.02 0.69 16 31 H 0.03 1.25 6.43 -2.39 -0.02 1.24 16 32 H 0.25 14.62 8.31 -92.71 -0.77 13.85 16 33 H 0.05 1.83 6.66 -2.39 -0.02 1.82 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.07 1.82 8.14 -2.39 -0.02 1.80 16 36 H 0.06 1.66 8.14 -2.39 -0.02 1.64 16 Total: -1.00 -63.16 277.85 1.63 -61.53 By element: Atomic # 1 Polarization: 7.52 SS G_CDS: 0.27 Total: 7.78 kcal Atomic # 6 Polarization: -13.19 SS G_CDS: 4.48 Total: -8.71 kcal Atomic # 7 Polarization: -103.55 SS G_CDS: -5.14 Total: -108.69 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -63.16 1.63 -61.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000085873487.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.376 kcal (2) G-P(sol) polarization free energy of solvation -63.160 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.784 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.628 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.532 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.156 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds