Wall clock time and date at job start Mon Mar 30 2020 02:43:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46904 * 1 3 3 C 1.46906 * 110.99595 * 2 1 4 4 C 1.50702 * 109.47362 * 293.95657 * 3 2 1 5 5 H 1.08001 * 119.99586 * 359.97438 * 4 3 2 6 6 C 1.37872 * 119.99790 * 180.02562 * 4 3 2 7 7 N 1.31512 * 120.00330 * 359.97438 * 6 4 3 8 8 Si 1.86800 * 119.99786 * 179.97438 * 6 4 3 9 9 H 1.48502 * 109.47174 * 0.02562 * 8 6 4 10 10 H 1.48505 * 109.47213 * 119.99467 * 8 6 4 11 11 H 1.48496 * 109.47519 * 239.99862 * 8 6 4 12 12 C 1.46896 * 111.00322 * 123.95458 * 2 1 3 13 13 H 1.09001 * 109.47271 * 186.04960 * 12 2 1 14 14 C 1.53002 * 109.47058 * 306.05037 * 12 2 1 15 15 C 1.52996 * 109.46891 * 180.02562 * 14 12 2 16 16 C 1.53000 * 109.47328 * 299.99597 * 15 14 12 17 17 C 1.52997 * 109.47060 * 60.00126 * 16 15 14 18 18 H 1.08996 * 109.47853 * 180.02562 * 17 16 15 19 19 N 1.46902 * 109.47094 * 59.99827 * 17 16 15 20 20 C 1.52997 * 109.46908 * 66.04690 * 12 2 1 21 21 H 1.09004 * 109.47092 * 296.04385 * 1 2 3 22 22 H 1.09002 * 109.47193 * 56.04254 * 1 2 3 23 23 H 1.08997 * 109.46599 * 176.04634 * 1 2 3 24 24 H 1.09005 * 109.46881 * 53.95755 * 3 2 1 25 25 H 1.09003 * 109.46661 * 173.95340 * 3 2 1 26 26 H 0.96997 * 119.99976 * 179.97438 * 7 6 4 27 27 H 1.08992 * 109.47056 * 59.99674 * 14 12 2 28 28 H 1.09004 * 109.47006 * 299.99790 * 14 12 2 29 29 H 1.09004 * 109.47368 * 179.97438 * 15 14 12 30 30 H 1.09001 * 109.47372 * 59.99964 * 15 14 12 31 31 H 1.09002 * 109.47398 * 180.02562 * 16 15 14 32 32 H 1.09001 * 109.47194 * 300.00476 * 16 15 14 33 33 H 1.00900 * 110.99481 * 60.00212 * 19 17 16 34 34 H 1.00898 * 110.99915 * 183.95130 * 19 17 16 35 35 H 1.09001 * 109.47375 * 300.00206 * 20 12 2 36 36 H 1.09000 * 109.47140 * 60.00224 * 20 12 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6368 2.0473 -1.2984 5 1 1.0745 1.5113 -2.0487 6 6 2.0275 3.3493 -1.5288 7 7 2.7126 4.0017 -0.6153 8 14 1.5836 4.1866 -3.1385 9 1 0.8153 3.2444 -3.9912 10 1 0.7565 5.3881 -2.8598 11 1 2.8254 4.5933 -3.8439 12 6 1.9955 -0.7660 1.1375 13 1 3.0798 -0.6610 1.1756 14 6 1.3858 -0.2344 2.4362 15 6 1.9347 -1.0318 3.6210 16 6 1.5713 -2.5086 3.4541 17 6 2.1809 -3.0402 2.1554 18 1 1.9218 -4.0921 2.0362 19 7 3.6422 -2.8981 2.2063 20 6 1.6316 -2.2426 0.9702 21 1 -0.3633 0.4512 0.9233 22 1 -0.3634 0.5740 -0.8524 23 1 -0.3632 -1.0252 -0.0709 24 1 1.5610 1.9274 0.8310 25 1 3.0797 1.3445 0.1083 26 1 2.9878 4.9175 -0.7775 27 1 0.3016 -0.3393 2.3982 28 1 1.6451 0.8176 2.5554 29 1 1.5007 -0.6529 4.5464 30 1 3.0189 -0.9264 3.6589 31 1 1.9620 -3.0766 4.2984 32 1 0.4871 -2.6140 3.4163 33 1 4.0290 -3.4161 2.9811 34 1 4.0637 -3.1825 1.3349 35 1 0.5473 -2.3475 0.9322 36 1 2.0659 -2.6213 0.0450 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000086409932.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:17 Heat of formation + Delta-G solvation = -32.899964 kcal Electronic energy + Delta-G solvation = -14932.573766 eV Core-core repulsion = 12642.834191 eV Total energy + Delta-G solvation = -2289.739575 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.45303 -37.26439 -34.71586 -33.32790 -30.93260 -29.16256 -28.86004 -26.73188 -23.95969 -23.18332 -21.30059 -19.77663 -18.53203 -16.94003 -16.73884 -16.49966 -15.77765 -15.48621 -15.32183 -14.91860 -14.53392 -14.03740 -13.73942 -13.21249 -13.12486 -13.01345 -12.69260 -12.63181 -12.51516 -12.22395 -12.07035 -11.68255 -11.45967 -11.33348 -11.14370 -11.03475 -10.60197 -9.36405 -8.84562 -8.19134 -6.30030 1.40121 1.41069 1.54946 2.40694 3.12309 3.38673 3.67647 3.92282 4.01353 4.11928 4.34578 4.44389 4.48300 4.63901 4.66932 4.69153 4.77603 4.81974 5.05924 5.07471 5.12063 5.18995 5.21819 5.32440 5.33129 5.39864 5.53338 5.59554 5.68304 6.09177 6.39739 6.43185 6.72818 6.78397 6.88298 7.39897 8.91940 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.053852 B = 0.007148 C = 0.007018 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 519.817727 B = 3916.062629 C = 3988.503401 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.037 3.963 2 N -0.548 5.548 3 C 0.214 3.786 4 C -0.525 4.525 5 H 0.062 0.938 6 C -0.002 4.002 7 N -0.936 5.936 8 Si 0.972 3.028 9 H -0.263 1.263 10 H -0.278 1.278 11 H -0.278 1.278 12 C 0.095 3.905 13 H 0.061 0.939 14 C -0.144 4.144 15 C -0.100 4.100 16 C -0.105 4.105 17 C 0.098 3.902 18 H 0.053 0.947 19 N -0.853 5.853 20 C -0.095 4.095 21 H 0.014 0.986 22 H 0.051 0.949 23 H 0.079 0.921 24 H -0.038 1.038 25 H -0.007 1.007 26 H 0.264 0.736 27 H 0.061 0.939 28 H 0.023 0.977 29 H 0.058 0.942 30 H 0.061 0.939 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.348 0.652 34 H 0.345 0.655 35 H 0.069 0.931 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.662 -14.567 6.652 16.234 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 N -0.271 5.271 3 C 0.087 3.913 4 C -0.563 4.563 5 H 0.081 0.919 6 C -0.199 4.199 7 N -0.577 5.577 8 Si 0.796 3.204 9 H -0.187 1.187 10 H -0.203 1.203 11 H -0.203 1.203 12 C -0.014 4.014 13 H 0.079 0.921 14 C -0.183 4.183 15 C -0.138 4.138 16 C -0.143 4.143 17 C -0.013 4.013 18 H 0.071 0.929 19 N -0.386 5.386 20 C -0.133 4.133 21 H 0.032 0.968 22 H 0.070 0.930 23 H 0.097 0.903 24 H -0.021 1.021 25 H 0.011 0.989 26 H 0.073 0.927 27 H 0.079 0.921 28 H 0.042 0.958 29 H 0.077 0.923 30 H 0.080 0.920 31 H 0.096 0.904 32 H 0.088 0.912 33 H 0.162 0.838 34 H 0.158 0.842 35 H 0.088 0.912 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.579 -13.864 6.342 15.462 hybrid contribution -0.142 0.486 -0.092 0.515 sum -2.721 -13.378 6.250 15.015 Atomic orbital electron populations 1.22244 0.88236 1.01086 0.99511 1.62256 1.07927 1.15020 1.41868 1.19274 0.92977 0.84342 0.94699 1.21561 1.34712 0.97563 1.02448 0.91933 1.25968 0.95025 0.98087 1.00848 1.70112 1.39463 1.11840 1.36239 0.85299 0.78090 0.78156 0.78838 1.18671 1.20324 1.20321 1.21566 0.98622 0.93842 0.87320 0.92084 1.22100 1.00400 0.98330 0.97444 1.21283 1.01085 0.95400 0.96017 1.21546 1.00522 0.95222 0.97008 1.21282 0.88405 0.96839 0.94814 0.92924 1.58621 1.04444 1.66134 1.09366 1.21560 1.00692 0.93125 0.97942 0.96785 0.93026 0.90286 1.02080 0.98909 0.92741 0.92073 0.95839 0.92289 0.91996 0.90435 0.91157 0.83825 0.84226 0.91212 0.92242 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.51 8.59 127.69 1.10 2.60 16 2 N -0.55 -25.03 4.70 -901.58 -4.24 -29.27 16 3 C 0.21 12.09 4.29 85.56 0.37 12.46 16 4 C -0.52 -31.12 8.46 25.60 0.22 -30.91 16 5 H 0.06 3.63 7.12 -2.91 -0.02 3.61 16 6 C 0.00 -0.10 5.46 84.65 0.46 0.36 16 7 N -0.94 -58.46 13.29 21.45 0.28 -58.17 16 8 Si 0.97 45.63 29.54 68.60 2.03 47.66 16 9 H -0.26 -11.82 7.11 99.48 0.71 -11.11 16 10 H -0.28 -12.61 7.11 99.48 0.71 -11.91 16 11 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 12 C 0.10 3.59 2.03 44.92 0.09 3.68 16 13 H 0.06 2.60 7.39 -2.39 -0.02 2.58 16 14 C -0.14 -5.11 4.45 30.59 0.14 -4.97 16 15 C -0.10 -2.75 5.77 30.59 0.18 -2.58 16 16 C -0.11 -2.22 5.61 30.59 0.17 -2.05 16 17 C 0.10 2.15 3.57 44.93 0.16 2.31 16 18 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 19 N -0.85 -18.37 7.72 -168.60 -1.30 -19.67 16 20 C -0.09 -2.71 4.78 30.61 0.15 -2.56 16 21 H 0.01 0.55 6.21 -2.39 -0.01 0.54 16 22 H 0.05 2.25 6.76 -2.39 -0.02 2.23 16 23 H 0.08 2.60 6.47 -2.39 -0.02 2.58 16 24 H -0.04 -2.36 7.06 -2.38 -0.02 -2.38 16 25 H -0.01 -0.45 7.93 -2.39 -0.02 -0.47 16 26 H 0.26 15.38 8.31 -92.71 -0.77 14.61 16 27 H 0.06 2.08 6.33 -2.39 -0.02 2.06 16 28 H 0.02 0.99 6.91 -2.38 -0.02 0.97 16 29 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 30 H 0.06 1.85 7.60 -2.39 -0.02 1.83 16 31 H 0.08 1.32 8.14 -2.39 -0.02 1.30 16 32 H 0.07 1.39 8.14 -2.39 -0.02 1.37 16 33 H 0.35 5.79 9.04 -89.69 -0.81 4.98 16 34 H 0.34 7.08 8.99 -89.70 -0.81 6.27 16 35 H 0.07 1.87 6.55 -2.39 -0.02 1.86 16 36 H 0.06 1.75 8.14 -2.39 -0.02 1.73 16 Total: -1.00 -67.25 272.97 -0.75 -68.00 By element: Atomic # 1 Polarization: 13.66 SS G_CDS: -0.55 Total: 13.11 kcal Atomic # 6 Polarization: -24.68 SS G_CDS: 3.03 Total: -21.65 kcal Atomic # 7 Polarization: -101.86 SS G_CDS: -5.26 Total: -107.11 kcal Atomic # 14 Polarization: 45.63 SS G_CDS: 2.03 Total: 47.66 kcal Total: -67.25 -0.75 -68.00 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000086409932.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 35.101 kcal (2) G-P(sol) polarization free energy of solvation -67.247 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.146 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.754 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.001 kcal (6) G-S(sol) free energy of system = (1) + (5) -32.900 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds