Wall clock time and date at job start Mon Mar 30 2020 02:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46909 * 111.00166 * 2 1 4 4 C 1.50698 * 109.47040 * 293.95819 * 3 2 1 5 5 H 1.08004 * 120.00284 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99862 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99928 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99899 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47200 * 59.99607 * 8 6 4 10 10 H 1.48500 * 109.46658 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47069 * 299.99610 * 8 6 4 12 12 C 1.46898 * 111.00216 * 123.95535 * 2 1 3 13 13 C 1.52995 * 109.46886 * 66.04510 * 12 2 1 14 14 H 1.09005 * 109.54037 * 305.09593 * 13 12 2 15 15 C 1.53125 * 109.50492 * 185.00380 * 13 12 2 16 16 C 1.53114 * 109.16368 * 182.40503 * 15 13 12 17 17 C 1.53037 * 109.31211 * 57.63311 * 16 15 13 18 18 N 1.46854 * 109.52285 * 300.88400 * 17 16 15 19 19 C 1.46840 * 111.23238 * 61.67711 * 18 17 16 20 20 H 1.08997 * 109.46873 * 296.04997 * 1 2 3 21 21 H 1.09005 * 109.47035 * 56.04046 * 1 2 3 22 22 H 1.08992 * 109.47501 * 176.04342 * 1 2 3 23 23 H 1.08997 * 109.46744 * 53.95627 * 3 2 1 24 24 H 1.08993 * 109.47151 * 173.95513 * 3 2 1 25 25 H 0.96999 * 119.99677 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.46920 * 306.04636 * 12 2 1 27 27 H 1.08995 * 109.47236 * 186.04558 * 12 2 1 28 28 H 1.08998 * 109.52257 * 62.49696 * 15 13 12 29 29 H 1.09004 * 109.56800 * 302.34406 * 15 13 12 30 30 H 1.09002 * 109.50377 * 177.59436 * 16 15 13 31 31 H 1.09003 * 109.50316 * 297.67431 * 16 15 13 32 32 H 1.09000 * 109.46159 * 60.85546 * 17 16 15 33 33 H 1.09000 * 109.46461 * 180.82902 * 17 16 15 34 34 H 1.00891 * 110.99725 * 185.80422 * 18 17 16 35 35 H 1.09001 * 109.46294 * 178.26219 * 19 18 17 36 36 H 1.09003 * 109.45458 * 58.29272 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0745 1.5114 -2.0488 6 6 2.0277 3.3492 -1.5288 7 7 2.7129 4.0016 -0.6153 8 14 1.5838 4.1866 -3.1386 9 1 0.1067 4.2238 -3.2863 10 1 2.1170 5.5726 -3.1389 11 1 2.1756 3.4288 -4.2704 12 6 1.9955 -0.7660 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5535 -2.3400 0.8414 15 6 2.0699 -3.0213 2.2136 16 6 1.7566 -4.5065 2.0129 17 6 2.4670 -5.0080 0.7536 18 7 2.0138 -4.2315 -0.4076 19 6 2.3462 -2.8090 -0.2587 20 1 -0.3633 0.4513 0.9233 21 1 -0.3633 0.5741 -0.8524 22 1 -0.3634 -1.0251 -0.0709 23 1 1.5612 1.9273 0.8309 24 1 3.0797 1.3444 0.1082 25 1 2.9875 4.9177 -0.7773 26 1 1.5611 -0.3872 2.0628 27 1 3.0797 -0.6611 1.1755 28 1 1.5308 -2.6498 3.0850 29 1 3.1415 -2.8924 2.3661 30 1 2.1054 -5.0720 2.8770 31 1 0.6805 -4.6396 1.9011 32 1 3.5439 -4.8880 0.8719 33 1 2.2337 -6.0616 0.6001 34 1 2.3961 -4.6046 -1.2635 35 1 2.0253 -2.2661 -1.1478 36 1 3.4235 -2.6989 -0.1351 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000087647749.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:02 Heat of formation + Delta-G solvation = -10.500418 kcal Electronic energy + Delta-G solvation = -14567.648010 eV Core-core repulsion = 12278.879752 eV Total energy + Delta-G solvation = -2288.768258 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -38.75611 -36.19973 -32.81366 -31.92263 -30.83994 -27.15796 -26.23499 -23.91831 -23.50033 -21.58074 -19.96241 -19.26441 -16.48334 -16.11036 -14.97132 -14.67589 -14.37765 -14.29834 -13.70159 -13.50964 -13.17873 -12.71256 -12.44778 -11.96493 -11.72955 -11.50345 -11.11395 -10.90210 -10.79473 -10.74316 -10.54202 -10.23971 -10.12724 -10.05410 -9.67338 -9.14043 -8.40448 -8.30285 -7.16493 -5.99746 -4.00883 3.35484 3.39172 3.42386 4.35590 4.44730 4.83435 5.01206 5.03565 5.30463 5.33333 5.36996 5.58574 5.62543 5.75693 5.86212 5.97447 6.03190 6.06972 6.16322 6.24019 6.24765 6.35134 6.45711 6.64950 6.69023 6.85236 7.20801 7.34239 7.40086 7.52087 7.83880 8.13558 8.26156 8.60396 9.06894 9.63141 11.11209 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.056423 B = 0.006282 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.128251 B = 4455.803579 C = 4625.658843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 N -0.539 5.539 3 C 0.192 3.808 4 C -0.506 4.506 5 H 0.063 0.937 6 C 0.054 3.946 7 N -0.900 5.900 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.276 1.276 12 C 0.060 3.940 13 C -0.079 4.079 14 H 0.076 0.924 15 C -0.118 4.118 16 C -0.115 4.115 17 C 0.058 3.942 18 N -0.694 5.694 19 C 0.072 3.928 20 H 0.008 0.992 21 H 0.072 0.928 22 H 0.048 0.952 23 H -0.011 1.011 24 H 0.028 0.972 25 H 0.261 0.739 26 H 0.022 0.978 27 H 0.064 0.936 28 H 0.060 0.940 29 H 0.057 0.943 30 H 0.060 0.940 31 H 0.067 0.933 32 H 0.025 0.975 33 H 0.067 0.933 34 H 0.339 0.661 35 H 0.091 0.909 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.013 -14.604 3.823 15.130 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 N -0.263 5.263 3 C 0.067 3.933 4 C -0.545 4.545 5 H 0.081 0.919 6 C -0.147 4.147 7 N -0.540 5.540 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.202 1.202 12 C -0.070 4.070 13 C -0.098 4.098 14 H 0.095 0.905 15 C -0.156 4.156 16 C -0.153 4.153 17 C -0.072 4.072 18 N -0.325 5.325 19 C -0.057 4.057 20 H 0.026 0.974 21 H 0.091 0.909 22 H 0.067 0.933 23 H 0.007 0.993 24 H 0.046 0.954 25 H 0.071 0.929 26 H 0.040 0.960 27 H 0.083 0.917 28 H 0.079 0.921 29 H 0.076 0.924 30 H 0.079 0.921 31 H 0.086 0.914 32 H 0.043 0.957 33 H 0.085 0.915 34 H 0.156 0.844 35 H 0.110 0.890 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -1.397 -14.563 3.665 15.082 hybrid contribution 0.580 1.003 -0.165 1.170 sum -0.817 -13.560 3.500 14.028 Atomic orbital electron populations 1.22246 0.89083 0.99624 1.00294 1.62088 1.06860 1.17552 1.39790 1.19721 0.95262 0.81799 0.96513 1.21143 1.34697 0.96902 1.01714 0.91899 1.24996 0.95344 0.97368 0.96967 1.69955 1.38457 1.11468 1.34127 0.86560 0.78690 0.78311 0.83834 1.20287 1.21399 1.20185 1.22077 0.99794 0.92469 0.92639 1.21192 1.00947 0.94025 0.93654 0.90541 1.21630 1.00951 0.94879 0.98123 1.21554 1.01199 0.96085 0.96456 1.21891 0.96544 0.97148 0.91622 1.60290 1.64327 1.03596 1.04275 1.21888 0.96873 0.86895 1.00043 0.97351 0.90906 0.93308 0.99292 0.95407 0.92928 0.95953 0.91741 0.92141 0.92436 0.92124 0.91386 0.95662 0.91458 0.84388 0.89024 0.95757 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.73 9.15 60.06 0.55 1.28 16 2 N -0.54 -11.79 4.23 -244.38 -1.03 -12.82 16 3 C 0.19 5.11 4.72 -4.97 -0.02 5.08 16 4 C -0.51 -14.39 8.46 -34.44 -0.29 -14.68 16 5 H 0.06 1.76 7.12 -52.48 -0.37 1.39 16 6 C 0.05 1.56 5.46 -17.82 -0.10 1.46 16 7 N -0.90 -27.10 13.29 55.43 0.74 -26.36 16 8 Si 0.90 21.85 29.54 -169.99 -5.02 16.83 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.21 16 10 H -0.29 -6.94 7.11 56.52 0.40 -6.54 16 11 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 12 C 0.06 1.10 4.35 -3.83 -0.02 1.08 16 13 C -0.08 -1.22 2.27 -90.54 -0.21 -1.42 16 14 H 0.08 1.24 6.34 -51.93 -0.33 0.91 16 15 C -0.12 -1.52 5.29 -26.61 -0.14 -1.66 16 16 C -0.12 -1.30 6.09 -26.65 -0.16 -1.46 16 17 C 0.06 0.65 6.55 -3.83 -0.03 0.62 16 18 N -0.69 -9.00 6.84 -113.82 -0.78 -9.78 16 19 C 0.07 1.09 5.71 -3.84 -0.02 1.07 16 20 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 21 H 0.07 1.56 6.76 -51.93 -0.35 1.21 16 22 H 0.05 0.86 6.37 -51.93 -0.33 0.53 16 23 H -0.01 -0.31 8.12 -51.93 -0.42 -0.73 16 24 H 0.03 0.79 7.93 -51.93 -0.41 0.38 16 25 H 0.26 7.44 8.31 -40.82 -0.34 7.10 16 26 H 0.02 0.41 8.12 -51.93 -0.42 -0.01 16 27 H 0.06 1.21 7.93 -51.93 -0.41 0.80 16 28 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 29 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 31 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.03 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 34 H 0.34 3.82 8.90 -39.30 -0.35 3.48 16 35 H 0.09 1.58 7.79 -51.93 -0.40 1.18 16 36 H 0.02 0.38 8.14 -51.93 -0.42 -0.05 16 LS Contribution 282.09 15.07 4.25 4.25 Total: -1.00 -29.70 282.09 -8.60 -38.30 By element: Atomic # 1 Polarization: 4.54 SS G_CDS: -6.32 Total: -1.78 kcal Atomic # 6 Polarization: -8.20 SS G_CDS: -0.43 Total: -8.63 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -1.08 Total: -48.96 kcal Atomic # 14 Polarization: 21.85 SS G_CDS: -5.02 Total: 16.83 kcal Total LS contribution 4.25 Total: 4.25 kcal Total: -29.70 -8.60 -38.30 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087647749.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.800 kcal (2) G-P(sol) polarization free energy of solvation -29.696 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -1.896 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.605 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.500 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds