Wall clock time and date at job start Mon Mar 30 2020 02:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46898 * 1 3 3 C 1.46909 * 111.00166 * 2 1 4 4 C 1.50698 * 109.47040 * 293.95819 * 3 2 1 5 5 H 1.08004 * 120.00284 * 359.97438 * 4 3 2 6 6 C 1.37881 * 119.99862 * 180.02562 * 4 3 2 7 7 N 1.31515 * 119.99928 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99899 * 179.97438 * 6 4 3 9 9 H 1.48495 * 109.47200 * 59.99607 * 8 6 4 10 10 H 1.48500 * 109.46658 * 180.02562 * 8 6 4 11 11 H 1.48507 * 109.47069 * 299.99610 * 8 6 4 12 12 C 1.46898 * 111.00216 * 123.95535 * 2 1 3 13 13 C 1.52995 * 109.46886 * 66.04510 * 12 2 1 14 14 H 1.09005 * 109.54037 * 305.09593 * 13 12 2 15 15 C 1.53125 * 109.50492 * 185.00380 * 13 12 2 16 16 C 1.53114 * 109.16368 * 182.40503 * 15 13 12 17 17 C 1.53037 * 109.31211 * 57.63311 * 16 15 13 18 18 N 1.46854 * 109.52285 * 300.88400 * 17 16 15 19 19 C 1.46840 * 111.23238 * 61.67711 * 18 17 16 20 20 H 1.08997 * 109.46873 * 296.04997 * 1 2 3 21 21 H 1.09005 * 109.47035 * 56.04046 * 1 2 3 22 22 H 1.08992 * 109.47501 * 176.04342 * 1 2 3 23 23 H 1.08997 * 109.46744 * 53.95627 * 3 2 1 24 24 H 1.08993 * 109.47151 * 173.95513 * 3 2 1 25 25 H 0.96999 * 119.99677 * 180.02562 * 7 6 4 26 26 H 1.09004 * 109.46920 * 306.04636 * 12 2 1 27 27 H 1.08995 * 109.47236 * 186.04558 * 12 2 1 28 28 H 1.08998 * 109.52257 * 62.49696 * 15 13 12 29 29 H 1.09004 * 109.56800 * 302.34406 * 15 13 12 30 30 H 1.09002 * 109.50377 * 177.59436 * 16 15 13 31 31 H 1.09003 * 109.50316 * 297.67431 * 16 15 13 32 32 H 1.09000 * 109.46159 * 60.85546 * 17 16 15 33 33 H 1.09000 * 109.46461 * 180.82902 * 17 16 15 34 34 H 1.00891 * 110.99725 * 185.80422 * 18 17 16 35 35 H 1.09001 * 109.46294 * 178.26219 * 19 18 17 36 36 H 1.09003 * 109.45458 * 58.29272 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.6369 2.0472 -1.2984 5 1 1.0745 1.5114 -2.0488 6 6 2.0277 3.3492 -1.5288 7 7 2.7129 4.0016 -0.6153 8 14 1.5838 4.1866 -3.1386 9 1 0.1067 4.2238 -3.2863 10 1 2.1170 5.5726 -3.1389 11 1 2.1756 3.4288 -4.2704 12 6 1.9955 -0.7660 1.1375 13 6 1.6315 -2.2426 0.9702 14 1 0.5535 -2.3400 0.8414 15 6 2.0699 -3.0213 2.2136 16 6 1.7566 -4.5065 2.0129 17 6 2.4670 -5.0080 0.7536 18 7 2.0138 -4.2315 -0.4076 19 6 2.3462 -2.8090 -0.2587 20 1 -0.3633 0.4513 0.9233 21 1 -0.3633 0.5741 -0.8524 22 1 -0.3634 -1.0251 -0.0709 23 1 1.5612 1.9273 0.8309 24 1 3.0797 1.3444 0.1082 25 1 2.9875 4.9177 -0.7773 26 1 1.5611 -0.3872 2.0628 27 1 3.0797 -0.6611 1.1755 28 1 1.5308 -2.6498 3.0850 29 1 3.1415 -2.8924 2.3661 30 1 2.1054 -5.0720 2.8770 31 1 0.6805 -4.6396 1.9011 32 1 3.5439 -4.8880 0.8719 33 1 2.2337 -6.0616 0.6001 34 1 2.3961 -4.6046 -1.2635 35 1 2.0253 -2.2661 -1.1478 36 1 3.4235 -2.6989 -0.1351 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000087647749.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:43:02 Heat of formation + Delta-G solvation = -31.516528 kcal Electronic energy + Delta-G solvation = -14568.559336 eV Core-core repulsion = 12278.879752 eV Total energy + Delta-G solvation = -2289.679585 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.29 seconds Orbital eigenvalues (eV) -39.98340 -37.80737 -34.81099 -33.21553 -32.06188 -29.17912 -27.78857 -25.64442 -24.58998 -23.11676 -21.50636 -20.45549 -18.51930 -17.36939 -16.72476 -16.23494 -16.05580 -15.36949 -15.22840 -14.85522 -14.65020 -13.94991 -13.90055 -13.58430 -13.34811 -12.95435 -12.77592 -12.69246 -12.53464 -12.31929 -12.06707 -11.81741 -11.50167 -11.39177 -11.18746 -10.99931 -10.61092 -9.34002 -8.99453 -8.20303 -6.30697 1.41318 1.44855 1.52765 2.40715 3.11945 3.31250 3.33534 3.93432 3.99149 4.06054 4.21754 4.42643 4.53113 4.57576 4.60063 4.73772 4.77294 4.80116 4.86382 4.96990 5.07549 5.09423 5.11709 5.18985 5.21018 5.32184 5.44157 5.52318 5.65574 6.05184 6.14741 6.34203 6.56153 6.64675 6.85642 7.39127 8.90798 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.056423 B = 0.006282 C = 0.006052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 496.128251 B = 4455.803579 C = 4625.658843 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.041 3.959 2 N -0.543 5.543 3 C 0.207 3.793 4 C -0.524 4.524 5 H 0.064 0.936 6 C 0.000 4.000 7 N -0.936 5.936 8 Si 0.971 3.029 9 H -0.267 1.267 10 H -0.283 1.283 11 H -0.268 1.268 12 C 0.061 3.939 13 C -0.069 4.069 14 H 0.072 0.928 15 C -0.115 4.115 16 C -0.112 4.112 17 C 0.055 3.945 18 N -0.697 5.697 19 C 0.079 3.921 20 H 0.007 0.993 21 H 0.056 0.944 22 H 0.078 0.922 23 H -0.041 1.041 24 H 0.001 0.999 25 H 0.264 0.736 26 H 0.022 0.978 27 H 0.055 0.945 28 H 0.066 0.934 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.065 0.935 32 H 0.027 0.973 33 H 0.089 0.911 34 H 0.349 0.651 35 H 0.067 0.933 36 H 0.017 0.983 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.618 -16.107 3.400 16.542 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.107 4.107 2 N -0.267 5.267 3 C 0.080 3.920 4 C -0.562 4.562 5 H 0.082 0.918 6 C -0.198 4.198 7 N -0.577 5.577 8 Si 0.795 3.205 9 H -0.192 1.192 10 H -0.208 1.208 11 H -0.193 1.193 12 C -0.068 4.068 13 C -0.089 4.089 14 H 0.091 0.909 15 C -0.154 4.154 16 C -0.149 4.149 17 C -0.075 4.075 18 N -0.329 5.329 19 C -0.051 4.051 20 H 0.026 0.974 21 H 0.075 0.925 22 H 0.097 0.903 23 H -0.023 1.023 24 H 0.019 0.981 25 H 0.073 0.927 26 H 0.040 0.960 27 H 0.073 0.927 28 H 0.085 0.915 29 H 0.076 0.924 30 H 0.103 0.897 31 H 0.084 0.916 32 H 0.045 0.955 33 H 0.107 0.893 34 H 0.167 0.833 35 H 0.085 0.915 36 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -2.009 -16.101 3.245 16.548 hybrid contribution 0.783 1.420 0.017 1.621 sum -1.227 -14.682 3.262 15.090 Atomic orbital electron populations 1.22220 0.87769 1.01175 0.99511 1.62019 1.08051 1.14880 1.41721 1.19387 0.93508 0.84084 0.94988 1.21450 1.34886 0.97542 1.02318 0.91784 1.25944 0.94969 0.98048 1.00789 1.70088 1.39384 1.11909 1.36317 0.85411 0.78859 0.77126 0.79068 1.19167 1.20827 1.19287 1.22149 0.99100 0.94203 0.91339 1.21089 1.00607 0.91871 0.95304 0.90946 1.21618 1.01004 0.95937 0.96806 1.21559 1.01167 0.94760 0.97443 1.22012 0.96649 0.97986 0.90805 1.60265 1.64595 1.02380 1.05626 1.21680 0.96249 0.88405 0.98750 0.97429 0.92478 0.90345 1.02301 0.98072 0.92690 0.96006 0.92663 0.91485 0.92413 0.89745 0.91584 0.95486 0.89261 0.83302 0.91473 0.96475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.66 9.15 127.69 1.17 2.83 16 2 N -0.54 -24.17 4.23 -927.07 -3.93 -28.09 16 3 C 0.21 11.39 4.72 85.55 0.40 11.80 16 4 C -0.52 -30.32 8.46 25.60 0.22 -30.10 16 5 H 0.06 3.62 7.12 -2.91 -0.02 3.60 16 6 C 0.00 0.02 5.46 84.66 0.46 0.48 16 7 N -0.94 -57.38 13.29 21.45 0.28 -57.10 16 8 Si 0.97 44.82 29.54 68.60 2.03 46.84 16 9 H -0.27 -11.80 7.11 99.48 0.71 -11.09 16 10 H -0.28 -12.72 7.11 99.48 0.71 -12.02 16 11 H -0.27 -11.94 7.11 99.48 0.71 -11.24 16 12 C 0.06 2.27 4.35 86.30 0.38 2.64 16 13 C -0.07 -2.07 2.27 -10.74 -0.02 -2.09 16 14 H 0.07 2.23 6.34 -2.38 -0.02 2.22 16 15 C -0.12 -2.76 5.29 30.67 0.16 -2.59 16 16 C -0.11 -2.17 6.09 30.64 0.19 -1.99 16 17 C 0.05 1.07 6.55 86.32 0.57 1.64 16 18 N -0.70 -16.71 6.84 -514.01 -3.52 -20.23 16 19 C 0.08 2.33 5.71 86.33 0.49 2.82 16 20 H 0.01 0.29 8.14 -2.39 -0.02 0.27 16 21 H 0.06 2.45 6.76 -2.38 -0.02 2.43 16 22 H 0.08 2.66 6.37 -2.39 -0.02 2.65 16 23 H -0.04 -2.44 8.12 -2.39 -0.02 -2.46 16 24 H 0.00 0.07 7.93 -2.39 -0.02 0.05 16 25 H 0.26 15.22 8.31 -92.71 -0.77 14.45 16 26 H 0.02 0.81 8.12 -2.38 -0.02 0.79 16 27 H 0.05 2.13 7.93 -2.39 -0.02 2.11 16 28 H 0.07 1.52 8.14 -2.39 -0.02 1.50 16 29 H 0.06 1.38 8.14 -2.38 -0.02 1.36 16 30 H 0.08 1.29 8.14 -2.39 -0.02 1.27 16 31 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 32 H 0.03 0.53 8.14 -2.39 -0.02 0.51 16 33 H 0.09 1.40 8.14 -2.39 -0.02 1.38 16 34 H 0.35 7.22 8.90 -89.70 -0.80 6.42 16 35 H 0.07 2.31 7.79 -2.39 -0.02 2.30 16 36 H 0.02 0.52 8.14 -2.39 -0.02 0.51 16 Total: -1.00 -63.92 282.09 -0.89 -64.81 By element: Atomic # 1 Polarization: 8.10 SS G_CDS: 0.23 Total: 8.33 kcal Atomic # 6 Polarization: -18.58 SS G_CDS: 4.01 Total: -14.57 kcal Atomic # 7 Polarization: -98.26 SS G_CDS: -7.16 Total: -105.42 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Total: -63.92 -0.89 -64.81 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000087647749.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.294 kcal (2) G-P(sol) polarization free energy of solvation -63.923 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -30.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.888 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.517 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.29 seconds