Wall clock time and date at job start Mon Mar 30 2020 02:52:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35588 * 117.00035 * 2 1 4 4 C 1.39021 * 120.56912 * 0.02562 * 3 2 1 5 5 C 1.38554 * 118.55070 * 179.97438 * 4 3 2 6 6 C 1.39127 * 119.64703 * 359.97438 * 5 4 3 7 7 Cl 1.73596 * 119.42440 * 180.02562 * 6 5 4 8 8 N 1.31434 * 121.15651 * 0.02749 * 6 5 4 9 9 C 1.33726 * 121.55351 * 359.97438 * 8 6 5 10 10 C 1.41013 * 119.88023 * 180.02562 * 9 8 6 11 11 H 1.08002 * 119.99720 * 173.59962 * 10 9 8 12 12 C 1.40047 * 120.00225 * 353.60285 * 10 9 8 13 13 N 1.30755 * 120.00201 * 6.27397 * 12 10 9 14 14 Si 1.86801 * 120.00012 * 186.27247 * 12 10 9 15 15 H 1.48503 * 109.47234 * 94.98492 * 14 12 10 16 16 H 1.48497 * 109.47453 * 214.98390 * 14 12 10 17 17 H 1.48502 * 109.47074 * 334.98896 * 14 12 10 18 18 H 1.08998 * 109.47449 * 59.99674 * 1 2 3 19 19 H 1.09005 * 109.46903 * 179.97438 * 1 2 3 20 20 H 1.08994 * 109.46858 * 299.99400 * 1 2 3 21 21 H 1.07991 * 120.72338 * 359.94648 * 4 3 2 22 22 H 1.08001 * 120.17034 * 180.02562 * 5 4 3 23 23 H 0.97004 * 120.00115 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 1.2990 2.3815 0.0005 5 6 1.9711 3.5931 0.0011 6 6 3.3623 3.6084 0.0016 7 17 4.1985 5.1296 0.0029 8 7 4.0546 2.4911 0.0010 9 6 3.4546 1.2960 0.0005 10 6 4.2320 0.1196 0.0005 11 1 3.7542 -0.8434 0.1043 12 6 5.6237 0.1999 -0.1341 13 7 6.2141 1.3665 -0.1364 14 14 6.6365 -1.3598 -0.3103 15 1 6.8685 -1.6393 -1.7502 16 1 7.9414 -1.1828 0.3760 17 1 5.9048 -2.4971 0.3030 18 1 -0.3634 0.5139 -0.8899 19 1 -0.3633 -1.0277 -0.0005 20 1 -0.3633 0.5137 0.8900 21 1 0.2196 2.3493 0.0001 22 1 1.4180 4.5207 0.0019 23 1 7.1781 1.4221 -0.2292 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095218232.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:10 Heat of formation + Delta-G solvation = -33.446830 kcal Electronic energy + Delta-G solvation = -11888.960938 eV Core-core repulsion = 9534.688867 eV Total energy + Delta-G solvation = -2354.272070 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.76374 -38.54526 -37.08666 -35.51809 -32.42445 -31.31921 -28.11489 -27.48576 -23.52596 -23.08610 -19.55319 -18.50002 -17.88226 -16.80238 -16.37131 -16.35468 -14.92822 -14.80727 -14.56662 -14.23585 -13.46297 -13.04776 -12.97828 -12.60690 -12.55334 -12.11602 -11.87421 -11.68975 -11.66250 -11.15704 -10.16476 -9.81284 -9.07417 -8.38310 -6.46727 0.67193 0.91250 1.32467 1.42116 1.51837 1.57550 2.23170 2.73944 2.81651 3.68941 4.16282 4.31140 4.50791 4.51094 4.69951 4.72810 4.77895 5.20966 5.32368 5.52098 5.80843 6.18888 6.28263 6.71724 7.02402 7.86927 8.38481 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.022481 B = 0.014918 C = 0.009016 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1245.196345 B = 1876.506684 C = 3104.679119 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.022 3.978 2 O -0.329 6.329 3 C -0.036 4.036 4 C -0.135 4.135 5 C -0.266 4.266 6 C 0.161 3.839 7 Cl -0.074 7.074 8 N -0.498 5.498 9 C 0.224 3.776 10 C -0.440 4.440 11 H 0.095 0.905 12 C 0.021 3.979 13 N -0.748 5.748 14 Si 0.991 3.009 15 H -0.263 1.263 16 H -0.267 1.267 17 H -0.254 1.254 18 H 0.054 0.946 19 H 0.116 0.884 20 H 0.055 0.945 21 H 0.153 0.847 22 H 0.136 0.864 23 H 0.282 0.718 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.952 -1.195 -0.202 6.075 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.073 4.073 2 O -0.243 6.243 3 C -0.085 4.085 4 C -0.159 4.159 5 C -0.290 4.290 6 C -0.007 4.007 7 Cl -0.046 7.046 8 N -0.216 5.216 9 C 0.097 3.903 10 C -0.471 4.471 11 H 0.113 0.887 12 C -0.202 4.202 13 N -0.370 5.370 14 Si 0.811 3.189 15 H -0.188 1.188 16 H -0.191 1.191 17 H -0.177 1.177 18 H 0.073 0.927 19 H 0.134 0.866 20 H 0.073 0.927 21 H 0.170 0.830 22 H 0.154 0.846 23 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -4.713 -1.115 -0.205 4.847 hybrid contribution -0.488 0.064 -0.074 0.497 sum -5.200 -1.051 -0.279 5.313 Atomic orbital electron populations 1.23185 0.78101 1.04716 1.01271 1.85905 1.21916 1.26571 1.89893 1.20258 0.93095 0.85089 1.10020 1.21288 0.99985 0.90865 1.03799 1.21053 0.91533 0.98714 1.17726 1.21904 0.88997 0.88438 1.01391 1.98263 1.81002 1.28349 1.97026 1.67991 1.37198 0.96041 1.20351 1.18378 0.87170 0.91228 0.93478 1.19872 0.92289 0.93135 1.41809 0.88704 1.27055 0.99278 1.00988 0.92858 1.70228 1.11368 1.27108 1.28295 0.85064 0.77273 0.77222 0.79391 1.18800 1.19112 1.17692 0.92692 0.86606 0.92684 0.82974 0.84593 0.90724 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.64 9.83 113.37 1.11 1.75 14 2 O -0.33 -14.20 9.63 -88.97 -0.86 -15.05 14 3 C -0.04 -1.73 6.73 23.20 0.16 -1.58 14 4 C -0.14 -5.69 9.13 22.53 0.21 -5.49 14 5 C -0.27 -11.60 9.88 22.56 0.22 -11.38 14 6 C 0.16 8.06 7.28 84.97 0.62 8.68 14 7 Cl -0.07 -3.21 29.10 -2.72 -0.08 -3.29 14 8 N -0.50 -28.30 7.86 -179.64 -1.41 -29.71 14 9 C 0.22 12.56 6.56 40.28 0.26 12.82 14 10 C -0.44 -24.12 8.93 23.39 0.21 -23.91 14 11 H 0.09 4.99 7.34 -2.91 -0.02 4.97 14 12 C 0.02 1.05 5.49 85.29 0.47 1.52 14 13 N -0.75 -40.78 11.49 21.84 0.25 -40.53 14 14 Si 0.99 38.33 29.56 68.60 2.03 40.36 14 15 H -0.26 -9.86 7.11 99.48 0.71 -9.15 14 16 H -0.27 -9.82 7.11 99.48 0.71 -9.11 14 17 H -0.25 -9.43 7.11 99.48 0.71 -8.72 14 18 H 0.05 1.44 7.70 -2.39 -0.02 1.42 14 19 H 0.12 2.59 8.14 -2.38 -0.02 2.57 14 20 H 0.05 1.44 7.69 -2.39 -0.02 1.42 14 21 H 0.15 5.02 6.44 -2.92 -0.02 5.00 14 22 H 0.14 5.02 8.06 -2.91 -0.02 5.00 14 23 H 0.28 13.88 8.29 -92.71 -0.77 13.11 14 Total: -1.00 -63.71 226.45 4.42 -59.29 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: 1.23 Total: 6.50 kcal Atomic # 6 Polarization: -20.83 SS G_CDS: 3.26 Total: -17.57 kcal Atomic # 7 Polarization: -69.08 SS G_CDS: -1.16 Total: -70.24 kcal Atomic # 8 Polarization: -14.20 SS G_CDS: -0.86 Total: -15.05 kcal Atomic # 14 Polarization: 38.33 SS G_CDS: 2.03 Total: 40.36 kcal Atomic # 17 Polarization: -3.21 SS G_CDS: -0.08 Total: -3.29 kcal Total: -63.71 4.42 -59.29 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095218232.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.842 kcal (2) G-P(sol) polarization free energy of solvation -63.711 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.869 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.422 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.289 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.447 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds