Wall clock time and date at job start Mon Mar 30 2020 02:45:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86790 * 120.00316 * 2 1 4 4 H 1.48507 * 109.47176 * 239.99906 * 3 2 1 5 5 H 1.48504 * 109.47425 * 359.97438 * 3 2 1 6 6 H 1.48495 * 109.47584 * 120.00154 * 3 2 1 7 7 C 1.37882 * 119.99657 * 180.02562 * 2 1 3 8 8 H 1.07995 * 119.99961 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99945 * 359.97438 * 7 2 1 10 10 O 1.45202 * 109.46859 * 180.02562 * 9 7 2 11 11 C 1.34799 * 116.99903 * 180.02562 * 10 9 7 12 12 O 1.21563 * 119.99860 * 359.97438 * 11 10 9 13 13 C 1.47111 * 120.00309 * 180.27135 * 11 10 9 14 14 C 1.35288 * 123.15915 * 179.45543 * 13 11 10 15 15 S 1.70936 * 108.82105 * 179.87105 * 14 13 11 16 16 C 1.70770 * 91.13859 * 0.33054 * 15 14 13 17 17 N 1.28621 * 110.58116 * 359.80279 * 16 15 14 18 18 H 0.97004 * 119.99536 * 0.02562 * 1 2 3 19 19 H 1.08998 * 109.47259 * 59.99941 * 9 7 2 20 20 H 1.09004 * 109.46840 * 299.99721 * 9 7 2 21 21 H 1.07998 * 125.58761 * 359.96069 * 14 13 11 22 22 H 1.07997 * 124.70850 * 179.83165 * 16 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1030 1.6962 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6963 1.2124 7 6 2.0044 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0001 9 6 1.2509 -2.4992 -0.0005 10 8 2.1944 -3.6029 -0.0005 11 6 1.6791 -4.8485 -0.0011 12 8 0.4740 -5.0077 -0.0011 13 6 2.5751 -6.0152 0.0049 14 6 2.1276 -7.2919 0.0155 15 16 3.4720 -8.3476 0.0158 16 6 4.5531 -7.0257 0.0116 17 7 3.9073 -5.9134 0.0061 18 1 -0.4850 0.8401 -0.0004 19 1 0.6238 -2.5567 -0.8903 20 1 0.6246 -2.5571 0.8898 21 1 1.0909 -7.5944 0.0213 22 1 5.6297 -7.1117 0.0129 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104462916.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:59 Heat of formation + Delta-G solvation = -69.152112 kcal Electronic energy + Delta-G solvation = -11399.780475 eV Core-core repulsion = 9046.003814 eV Total energy + Delta-G solvation = -2353.776661 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.025 amu Computer time = 0.11 seconds Orbital eigenvalues (eV) -41.69887 -40.15823 -37.53784 -35.08603 -31.87930 -30.16979 -27.32487 -25.20781 -23.76818 -20.97483 -20.05625 -18.74297 -18.05056 -17.44411 -17.29373 -16.65629 -15.94836 -15.55088 -14.64712 -14.37411 -14.23687 -13.73707 -13.19839 -12.97771 -12.80851 -12.23369 -11.85579 -11.78600 -11.53399 -10.81743 -10.80100 -10.72466 -10.04053 -8.41924 -6.59276 -0.61415 0.25315 0.53766 0.73531 1.38641 1.45416 1.53714 1.94415 2.04274 2.37224 2.91839 3.17514 3.87096 4.04832 4.31576 4.57572 4.81815 4.83769 5.28952 5.60460 5.81571 6.35688 6.52575 6.80721 7.12529 8.70595 Molecular weight = 213.02amu Principal moments of inertia in cm(-1) A = 0.072339 B = 0.006349 C = 0.005855 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 386.972593 B = 4408.933728 C = 4780.752883 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.928 5.928 2 C 0.007 3.993 3 Si 0.999 3.001 4 H -0.261 1.261 5 H -0.272 1.272 6 H -0.261 1.261 7 C -0.559 4.559 8 H 0.074 0.926 9 C 0.217 3.783 10 O -0.348 6.348 11 C 0.521 3.479 12 O -0.542 6.542 13 C -0.010 4.010 14 C -0.227 4.227 15 S 0.340 5.660 16 C -0.008 4.008 17 N -0.472 5.472 18 H 0.276 0.724 19 H 0.004 0.996 20 H 0.004 0.996 21 H 0.200 0.800 22 H 0.247 0.753 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.715 -17.525 0.054 20.038 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.566 5.566 2 C -0.192 4.192 3 Si 0.820 3.180 4 H -0.186 1.186 5 H -0.197 1.197 6 H -0.186 1.186 7 C -0.596 4.596 8 H 0.092 0.908 9 C 0.145 3.855 10 O -0.263 6.263 11 C 0.365 3.635 12 O -0.435 6.435 13 C -0.144 4.144 14 C -0.369 4.369 15 S 0.596 5.404 16 C -0.307 4.307 17 N -0.186 5.186 18 H 0.085 0.915 19 H 0.022 0.978 20 H 0.022 0.978 21 H 0.217 0.783 22 H 0.263 0.737 Dipole moment (debyes) X Y Z Total from point charges 9.651 -17.959 0.054 20.388 hybrid contribution -1.002 1.830 -0.005 2.087 sum 8.649 -16.129 0.049 18.302 Atomic orbital electron populations 1.70101 1.08078 1.29371 1.49055 1.26144 0.96104 1.03800 0.93162 0.85009 0.77899 0.75405 0.79707 1.18584 1.19656 1.18575 1.21276 0.94590 0.89445 1.54337 0.90794 1.20574 0.87699 0.81713 0.95527 1.86635 1.42726 1.15056 1.81840 1.20766 0.86392 0.84084 0.72252 1.90780 1.16712 1.87488 1.48483 1.19278 0.89755 0.91344 1.13975 1.27057 1.09656 0.96073 1.04138 1.82330 0.90152 1.07709 1.60191 1.29286 1.07944 0.90271 1.03183 1.66979 1.05085 1.31835 1.14731 0.91536 0.97804 0.97821 0.78300 0.73747 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.53 13.29 21.45 0.28 -57.25 14 2 C 0.01 0.43 5.46 84.66 0.46 0.89 14 3 Si 1.00 44.82 29.54 68.60 2.03 46.84 14 4 H -0.26 -11.20 7.11 99.48 0.71 -10.49 14 5 H -0.27 -11.55 7.11 99.48 0.71 -10.85 14 6 H -0.26 -11.19 7.11 99.48 0.71 -10.48 14 7 C -0.56 -34.61 9.44 25.60 0.24 -34.37 14 8 H 0.07 4.44 7.81 -2.91 -0.02 4.41 14 9 C 0.22 13.43 5.23 71.24 0.37 13.80 14 10 O -0.35 -19.41 10.14 -57.11 -0.58 -19.99 14 11 C 0.52 25.40 7.94 70.15 0.56 25.95 14 12 O -0.54 -28.23 16.51 19.63 0.32 -27.91 14 13 C -0.01 -0.38 6.71 40.52 0.27 -0.10 14 14 C -0.23 -5.75 10.62 67.14 0.71 -5.04 14 15 S 0.34 4.60 22.96 -56.49 -1.30 3.30 14 16 C -0.01 -0.15 12.17 130.71 1.59 1.44 14 17 N -0.47 -15.66 10.60 -193.10 -2.05 -17.70 14 18 H 0.28 15.69 8.31 -92.71 -0.77 14.92 14 19 H 0.00 0.26 8.14 -2.39 -0.02 0.24 14 20 H 0.00 0.25 8.14 -2.38 -0.02 0.23 14 21 H 0.20 4.55 8.03 -2.91 -0.02 4.53 14 22 H 0.25 2.28 8.06 -2.91 -0.02 2.25 14 Total: -1.00 -79.53 230.40 4.16 -75.36 By element: Atomic # 1 Polarization: -6.47 SS G_CDS: 1.24 Total: -5.23 kcal Atomic # 6 Polarization: -1.64 SS G_CDS: 4.21 Total: 2.57 kcal Atomic # 7 Polarization: -73.19 SS G_CDS: -1.76 Total: -74.95 kcal Atomic # 8 Polarization: -47.65 SS G_CDS: -0.26 Total: -47.90 kcal Atomic # 14 Polarization: 44.82 SS G_CDS: 2.03 Total: 46.84 kcal Atomic # 16 Polarization: 4.60 SS G_CDS: -1.30 Total: 3.30 kcal Total: -79.53 4.16 -75.36 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104462916.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.212 kcal (2) G-P(sol) polarization free energy of solvation -79.528 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -73.316 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.364 kcal (6) G-S(sol) free energy of system = (1) + (5) -69.152 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.11 seconds