Wall clock time and date at job start Mon Mar 30 2020 02:56:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30874 * 1 3 3 Si 1.86800 * 120.00359 * 2 1 4 4 H 1.48498 * 109.47028 * 239.99962 * 3 2 1 5 5 H 1.48503 * 109.46851 * 359.97438 * 3 2 1 6 6 H 1.48492 * 109.47412 * 119.99571 * 3 2 1 7 7 C 1.40072 * 119.99850 * 179.97438 * 2 1 3 8 8 H 1.07995 * 120.00017 * 180.28075 * 7 2 1 9 9 C 1.39915 * 119.99890 * 0.02562 * 7 2 1 10 10 C 1.38283 * 125.40367 * 179.97438 * 9 7 2 11 11 C 1.36806 * 114.19561 * 180.02562 * 10 9 7 12 12 C 1.50703 * 122.33107 * 179.97438 * 11 10 9 13 13 H 1.09008 * 109.46537 * 339.99801 * 12 11 10 14 14 N 1.46893 * 109.47209 * 220.00281 * 12 11 10 15 15 C 1.52996 * 109.47305 * 99.99903 * 12 11 10 16 16 O 1.42902 * 109.47159 * 185.00452 * 15 12 11 17 17 C 1.34537 * 115.34614 * 359.97438 * 11 10 9 18 18 S 1.75799 * 110.14090 * 359.73702 * 17 11 10 19 19 H 0.96996 * 119.99606 * 0.02562 * 1 2 3 20 20 H 1.07998 * 122.90748 * 0.02562 * 10 9 7 21 21 H 1.00909 * 111.00035 * 176.04319 * 14 12 11 22 22 H 1.00900 * 111.00337 * 299.99522 * 14 12 11 23 23 H 1.09002 * 109.47109 * 305.00229 * 15 12 11 24 24 H 1.08997 * 109.47195 * 64.99966 * 15 12 11 25 25 H 0.96696 * 113.99577 * 179.97438 * 16 15 12 26 26 H 1.07996 * 124.92893 * 179.97438 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3087 0.0000 0.0000 3 14 2.2428 1.6177 0.0000 4 1 3.0966 1.6963 -1.2125 5 1 1.2778 2.7464 -0.0006 6 1 3.0965 1.6964 1.2125 7 6 2.0091 -1.2131 0.0005 8 1 3.0890 -1.2131 0.0051 9 6 1.3094 -2.4247 0.0005 10 6 1.8849 -3.6821 0.0005 11 6 0.9836 -4.7113 0.0000 12 6 1.4106 -6.1566 -0.0007 13 1 2.4397 -6.2312 -0.3522 14 7 0.5320 -6.9263 -0.8914 15 6 1.3148 -6.7174 1.4196 16 8 1.8290 -8.0505 1.4410 17 6 -0.3105 -4.3435 0.0001 18 16 -0.4416 -2.5905 0.0085 19 1 -0.4849 0.8400 -0.0004 20 1 2.9536 -3.8383 0.0009 21 1 0.8369 -7.8858 -0.9594 22 1 -0.4284 -6.8729 -0.5866 23 1 1.8969 -6.0925 2.0970 24 1 0.2723 -6.7248 1.7377 25 1 1.7998 -8.4693 2.3121 26 1 -1.1473 -5.0262 -0.0007 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104513524.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:03 Heat of formation + Delta-G solvation = -68.514144 kcal Electronic energy + Delta-G solvation = -11832.620860 eV Core-core repulsion = 9614.704958 eV Total energy + Delta-G solvation = -2217.915902 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.25 seconds Orbital eigenvalues (eV) -39.35463 -37.41729 -36.01733 -34.29144 -30.70660 -28.50916 -26.85320 -24.60965 -21.93997 -19.82599 -19.30281 -18.09382 -17.28930 -16.93359 -16.01051 -15.90213 -15.56437 -15.04367 -14.00123 -13.81119 -13.54442 -13.48858 -12.93121 -12.82792 -12.59807 -12.28821 -12.00803 -11.68649 -11.25134 -11.06393 -10.80748 -9.60570 -9.31181 -8.77676 -8.61292 -6.45090 0.83036 1.37756 1.52454 1.52636 1.73427 2.09093 2.20313 2.28047 3.07933 3.42070 3.80925 4.13562 4.23391 4.45555 4.76498 4.84327 4.98838 5.03176 5.32224 5.64793 5.92629 6.18020 6.23221 6.35752 6.64453 6.68063 6.71017 6.79916 8.09305 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.060096 B = 0.007922 C = 0.007369 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 465.809341 B = 3533.696036 C = 3798.890771 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.809 5.809 2 C 0.015 3.985 3 Si 1.009 2.991 4 H -0.258 1.258 5 H -0.261 1.261 6 H -0.256 1.256 7 C -0.427 4.427 8 H 0.094 0.906 9 C 0.009 3.991 10 C -0.378 4.378 11 C -0.030 4.030 12 C 0.159 3.841 13 H 0.067 0.933 14 N -0.836 5.836 15 C 0.061 3.939 16 O -0.583 6.583 17 C -0.396 4.396 18 S 0.102 5.898 19 H 0.306 0.694 20 H 0.095 0.905 21 H 0.348 0.652 22 H 0.341 0.659 23 H 0.043 0.957 24 H 0.051 0.949 25 H 0.397 0.603 26 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.351 -4.162 3.296 5.321 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.436 5.436 2 C -0.203 4.203 3 Si 0.828 3.172 4 H -0.182 1.182 5 H -0.185 1.185 6 H -0.180 1.180 7 C -0.462 4.462 8 H 0.112 0.888 9 C -0.111 4.111 10 C -0.403 4.403 11 C -0.042 4.042 12 C 0.045 3.955 13 H 0.085 0.915 14 N -0.366 5.366 15 C -0.019 4.019 16 O -0.391 6.391 17 C -0.531 4.531 18 S 0.362 5.638 19 H 0.119 0.881 20 H 0.113 0.887 21 H 0.162 0.838 22 H 0.155 0.845 23 H 0.062 0.938 24 H 0.069 0.931 25 H 0.247 0.753 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -0.765 -2.475 2.099 3.334 hybrid contribution 1.171 -1.084 1.403 2.125 sum 0.407 -3.559 3.502 5.009 Atomic orbital electron populations 1.68919 1.08905 1.32071 1.33752 1.27150 0.95899 1.05567 0.91644 0.84803 0.78379 0.73772 0.80277 1.18248 1.18474 1.18033 1.19451 0.95705 0.89826 1.41187 0.88846 1.22156 0.95647 0.96550 0.96769 1.19726 0.97820 0.91481 1.31294 1.17986 0.92508 0.93542 1.00153 1.19817 0.96581 0.89418 0.89677 0.91472 1.58778 1.06006 1.17137 1.54674 1.22824 0.97672 0.83206 0.98214 1.86360 1.86559 1.28251 1.37938 1.25297 0.98716 1.01031 1.28049 1.84295 1.05581 0.97615 1.76322 0.88113 0.88681 0.83811 0.84517 0.93842 0.93055 0.75292 0.84659 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.81 -39.96 10.65 21.86 0.23 -39.73 15 2 C 0.01 0.71 5.50 85.28 0.47 1.18 15 3 Si 1.01 35.93 29.56 68.60 2.03 37.96 15 4 H -0.26 -9.01 7.11 99.48 0.71 -8.31 15 5 H -0.26 -8.63 7.11 99.48 0.71 -7.92 15 6 H -0.26 -8.84 7.11 99.48 0.71 -8.13 15 7 C -0.43 -22.67 9.29 23.12 0.21 -22.46 15 8 H 0.09 4.73 7.85 -2.91 -0.02 4.71 15 9 C 0.01 0.49 6.19 22.69 0.14 0.63 15 10 C -0.38 -20.05 9.94 21.94 0.22 -19.83 15 11 C -0.03 -1.44 4.84 -21.05 -0.10 -1.54 15 12 C 0.16 6.20 3.36 44.17 0.15 6.35 15 13 H 0.07 2.77 8.08 -2.38 -0.02 2.75 15 14 N -0.84 -28.90 9.08 -171.81 -1.56 -30.46 15 15 C 0.06 1.97 6.62 71.98 0.48 2.44 15 16 O -0.58 -15.64 13.33 -148.98 -1.99 -17.62 15 17 C -0.40 -18.83 10.42 66.97 0.70 -18.13 15 18 S 0.10 5.29 20.27 -56.49 -1.14 4.15 15 19 H 0.31 13.45 8.30 -92.71 -0.77 12.68 15 20 H 0.10 4.93 8.06 -2.91 -0.02 4.91 15 21 H 0.35 10.45 8.75 -89.69 -0.78 9.67 15 22 H 0.34 11.09 7.71 -89.69 -0.69 10.39 15 23 H 0.04 1.46 8.14 -2.39 -0.02 1.44 15 24 H 0.05 1.58 8.14 -2.39 -0.02 1.56 15 25 H 0.40 6.52 9.12 -74.06 -0.68 5.85 15 26 H 0.14 5.76 7.16 -2.91 -0.02 5.74 15 Total: -1.00 -60.63 241.66 -1.09 -61.72 By element: Atomic # 1 Polarization: 36.26 SS G_CDS: -0.93 Total: 35.33 kcal Atomic # 6 Polarization: -53.62 SS G_CDS: 2.26 Total: -51.36 kcal Atomic # 7 Polarization: -68.86 SS G_CDS: -1.33 Total: -70.18 kcal Atomic # 8 Polarization: -15.64 SS G_CDS: -1.99 Total: -17.62 kcal Atomic # 14 Polarization: 35.93 SS G_CDS: 2.03 Total: 37.96 kcal Atomic # 16 Polarization: 5.29 SS G_CDS: -1.14 Total: 4.15 kcal Total: -60.63 -1.09 -61.72 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104513524.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.794 kcal (2) G-P(sol) polarization free energy of solvation -60.630 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -67.423 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.091 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.720 kcal (6) G-S(sol) free energy of system = (1) + (5) -68.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.25 seconds