Wall clock time and date at job start Mon Mar 30 2020 02:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48493 * 109.47542 * 270.00182 * 3 2 1 5 5 H 1.48499 * 109.46784 * 30.00469 * 3 2 1 6 6 H 1.48506 * 109.47061 * 149.99851 * 3 2 1 7 7 C 1.37879 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99825 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99988 * 180.02562 * 7 2 1 10 10 H 1.08995 * 109.47241 * 59.99842 * 9 7 2 11 11 N 1.46904 * 109.46913 * 300.00007 * 9 7 2 12 12 C 1.50700 * 109.47071 * 180.02562 * 9 7 2 13 13 C 1.33387 * 122.54272 * 80.02181 * 12 9 7 14 14 S 1.75882 * 109.59508 * 179.73408 * 13 12 9 15 15 C 1.75891 * 90.96783 * 0.31615 * 14 13 12 16 16 C 1.50699 * 125.20120 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47152 * 269.69405 * 16 15 14 18 18 C 1.33384 * 109.59287 * 359.68425 * 15 14 13 19 19 H 0.96998 * 120.00043 * 359.97438 * 1 2 3 20 20 H 1.00902 * 110.99641 * 299.99789 * 11 9 7 21 21 H 1.00896 * 111.00091 * 63.95227 * 11 9 7 22 22 H 1.08004 * 125.19966 * 359.94072 * 13 12 9 23 23 H 1.08997 * 109.47198 * 149.69083 * 16 15 14 24 24 H 1.09008 * 109.47393 * 29.68800 * 16 15 14 25 25 H 0.96700 * 114.00311 * 180.02562 * 17 16 15 26 26 H 1.08000 * 122.53410 * 180.22404 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8745 -0.6808 0.8905 11 7 4.0016 -0.5007 -1.1988 12 6 4.0139 -2.6149 -0.0013 13 6 4.0698 -3.3551 -1.1096 14 16 4.7125 -4.9463 -0.7243 15 6 4.8649 -4.5069 0.9720 16 6 5.3879 -5.4095 2.0596 17 8 4.3026 -6.1383 2.6367 18 6 4.4526 -3.2505 1.1474 19 1 -0.4850 0.8400 0.0004 20 1 3.6784 -0.9578 -2.0383 21 1 3.7322 0.4715 -1.1897 22 1 3.7696 -3.0263 -2.0936 23 1 5.8719 -4.8083 2.8292 24 1 6.1100 -6.1078 1.6363 25 1 4.5662 -6.7405 3.3459 26 1 4.4603 -2.7661 2.1126 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104660640.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:19 Heat of formation + Delta-G solvation = -12.637385 kcal Electronic energy + Delta-G solvation = -11899.787526 eV Core-core repulsion = 9684.294622 eV Total energy + Delta-G solvation = -2215.492904 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -38.15107 -36.61851 -34.13336 -31.78378 -29.78170 -26.43069 -25.53720 -23.39393 -20.22866 -18.18733 -17.43385 -17.24099 -16.56239 -15.24181 -14.82983 -14.16630 -14.13289 -13.20692 -12.67375 -12.54647 -12.32612 -11.69250 -11.63534 -11.32206 -10.92740 -10.77404 -10.44655 -10.02267 -9.95315 -9.50356 -8.77642 -8.12580 -7.88235 -7.39645 -6.22153 -4.25503 1.52860 2.17908 2.55905 3.13131 3.27498 3.27979 3.44176 4.23357 4.54062 5.06437 5.16329 5.23778 5.47035 5.75176 5.89511 6.11521 6.30125 6.68613 6.74279 6.98561 7.37081 7.49352 7.64633 8.06451 8.28270 8.49565 8.86680 9.36588 10.90627 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.044378 B = 0.008725 C = 0.008248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.798311 B = 3208.216927 C = 3394.090292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.072 3.928 3 Si 0.873 3.127 4 H -0.275 1.275 5 H -0.290 1.290 6 H -0.259 1.259 7 C -0.544 4.544 8 H 0.076 0.924 9 C 0.227 3.773 10 H 0.050 0.950 11 N -0.848 5.848 12 C -0.050 4.050 13 C -0.193 4.193 14 S 0.057 5.943 15 C -0.204 4.204 16 C 0.156 3.844 17 O -0.565 6.565 18 C -0.091 4.091 19 H 0.266 0.734 20 H 0.330 0.670 21 H 0.317 0.683 22 H 0.160 0.840 23 H 0.061 0.939 24 H 0.051 0.949 25 H 0.376 0.624 26 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.944 -7.784 1.867 13.558 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.527 5.527 2 C -0.131 4.131 3 Si 0.702 3.298 4 H -0.201 1.201 5 H -0.217 1.217 6 H -0.184 1.184 7 C -0.584 4.584 8 H 0.095 0.905 9 C 0.115 3.885 10 H 0.068 0.932 11 N -0.381 5.381 12 C -0.061 4.061 13 C -0.328 4.328 14 S 0.320 5.680 15 C -0.321 4.321 16 C 0.076 3.924 17 O -0.370 6.370 18 C -0.123 4.123 19 H 0.076 0.924 20 H 0.142 0.858 21 H 0.133 0.867 22 H 0.177 0.823 23 H 0.079 0.921 24 H 0.069 0.931 25 H 0.222 0.778 26 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 11.491 -8.819 0.841 14.510 hybrid contribution -0.849 2.073 0.953 2.434 sum 10.642 -6.746 1.794 12.728 Atomic orbital electron populations 1.69898 1.06216 1.27156 1.49424 1.25042 0.94854 0.99004 0.94228 0.87003 0.80361 0.83839 0.78592 1.20146 1.21736 1.18361 1.21668 0.89634 0.94985 1.52105 0.90539 1.18203 0.93435 0.86283 0.90574 0.93240 1.59712 1.66917 1.05568 1.05881 1.18969 0.97449 0.98388 0.91307 1.25180 1.09443 0.95076 1.03082 1.83727 1.65242 1.16736 1.02283 1.23836 1.12944 0.98385 0.96929 1.20301 0.87660 0.92192 0.92200 1.86661 1.35049 1.59876 1.55416 1.20060 0.98807 0.93697 0.99773 0.92383 0.85790 0.86688 0.82299 0.92064 0.93066 0.77750 0.84689 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.88 13.96 55.43 0.77 -26.11 15 2 C 0.07 2.05 5.47 -17.82 -0.10 1.95 15 3 Si 0.87 20.89 24.61 -169.99 -4.18 16.70 15 4 H -0.27 -6.29 7.01 56.52 0.40 -5.90 15 5 H -0.29 -7.00 7.11 56.52 0.40 -6.59 15 6 H -0.26 -6.01 6.54 56.52 0.37 -5.64 15 7 C -0.54 -15.22 9.29 -34.44 -0.32 -15.54 15 8 H 0.08 2.39 7.98 -52.49 -0.42 1.97 15 9 C 0.23 5.42 2.56 -70.01 -0.18 5.24 15 10 H 0.05 1.22 7.15 -51.93 -0.37 0.84 15 11 N -0.85 -18.71 9.00 -6.65 -0.06 -18.77 15 12 C -0.05 -1.07 4.80 -106.25 -0.51 -1.58 15 13 C -0.19 -3.78 10.41 29.04 0.30 -3.48 15 14 S 0.06 0.95 23.33 -107.50 -2.51 -1.55 15 15 C -0.20 -3.54 6.14 -36.01 -0.22 -3.76 15 16 C 0.16 2.06 7.54 36.01 0.27 2.33 15 17 O -0.56 -7.80 13.64 -35.23 -0.48 -8.28 15 18 C -0.09 -1.77 9.82 -41.21 -0.40 -2.18 15 19 H 0.27 7.51 8.31 -40.82 -0.34 7.17 15 20 H 0.33 6.90 7.72 -39.29 -0.30 6.59 15 21 H 0.32 7.10 4.29 -39.29 -0.17 6.93 15 22 H 0.16 2.95 7.18 -52.48 -0.38 2.57 15 23 H 0.06 0.69 8.14 -51.93 -0.42 0.27 15 24 H 0.05 0.57 8.14 -51.92 -0.42 0.14 15 25 H 0.38 2.93 9.12 45.56 0.42 3.34 15 26 H 0.14 2.47 8.06 -52.49 -0.42 2.04 15 LS Contribution 237.32 15.07 3.58 3.58 Total: -1.00 -31.99 237.32 -5.70 -37.69 By element: Atomic # 1 Polarization: 15.42 SS G_CDS: -1.66 Total: 13.75 kcal Atomic # 6 Polarization: -15.86 SS G_CDS: -1.16 Total: -17.02 kcal Atomic # 7 Polarization: -45.59 SS G_CDS: 0.71 Total: -44.87 kcal Atomic # 8 Polarization: -7.80 SS G_CDS: -0.48 Total: -8.28 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -4.18 Total: 16.70 kcal Atomic # 16 Polarization: 0.95 SS G_CDS: -2.51 Total: -1.55 kcal Total LS contribution 3.58 Total: 3.58 kcal Total: -31.99 -5.70 -37.69 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104660640.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.056 kcal (2) G-P(sol) polarization free energy of solvation -31.989 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.693 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds