Wall clock time and date at job start Mon Mar 30 2020 02:56:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86798 * 120.00104 * 2 1 4 4 H 1.48493 * 109.47542 * 270.00182 * 3 2 1 5 5 H 1.48499 * 109.46784 * 30.00469 * 3 2 1 6 6 H 1.48506 * 109.47061 * 149.99851 * 3 2 1 7 7 C 1.37879 * 119.99987 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99825 * 359.97438 * 7 2 1 9 9 C 1.50703 * 119.99988 * 180.02562 * 7 2 1 10 10 H 1.08995 * 109.47241 * 59.99842 * 9 7 2 11 11 N 1.46904 * 109.46913 * 300.00007 * 9 7 2 12 12 C 1.50700 * 109.47071 * 180.02562 * 9 7 2 13 13 C 1.33387 * 122.54272 * 80.02181 * 12 9 7 14 14 S 1.75882 * 109.59508 * 179.73408 * 13 12 9 15 15 C 1.75891 * 90.96783 * 0.31615 * 14 13 12 16 16 C 1.50699 * 125.20120 * 179.97438 * 15 14 13 17 17 O 1.42903 * 109.47152 * 269.69405 * 16 15 14 18 18 C 1.33384 * 109.59287 * 359.68425 * 15 14 13 19 19 H 0.96998 * 120.00043 * 359.97438 * 1 2 3 20 20 H 1.00902 * 110.99641 * 299.99789 * 11 9 7 21 21 H 1.00896 * 111.00091 * 63.95227 * 11 9 7 22 22 H 1.08004 * 125.19966 * 359.94072 * 13 12 9 23 23 H 1.08997 * 109.47198 * 149.69083 * 16 15 14 24 24 H 1.09008 * 109.47393 * 29.68800 * 16 15 14 25 25 H 0.96700 * 114.00311 * 180.02562 * 17 16 15 26 26 H 1.08000 * 122.53410 * 180.22404 * 18 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4466 2.6526 0.7001 6 1 3.5467 1.4401 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 1.4645 -2.1294 -0.0005 9 6 3.5115 -1.1941 0.0000 10 1 3.8745 -0.6808 0.8905 11 7 4.0016 -0.5007 -1.1988 12 6 4.0139 -2.6149 -0.0013 13 6 4.0698 -3.3551 -1.1096 14 16 4.7125 -4.9463 -0.7243 15 6 4.8649 -4.5069 0.9720 16 6 5.3879 -5.4095 2.0596 17 8 4.3026 -6.1383 2.6367 18 6 4.4526 -3.2505 1.1474 19 1 -0.4850 0.8400 0.0004 20 1 3.6784 -0.9578 -2.0383 21 1 3.7322 0.4715 -1.1897 22 1 3.7696 -3.0263 -2.0936 23 1 5.8719 -4.8083 2.8292 24 1 6.1100 -6.1078 1.6363 25 1 4.5662 -6.7405 3.3459 26 1 4.4603 -2.7661 2.1126 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000104660640.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:19 Heat of formation + Delta-G solvation = -39.347430 kcal Electronic energy + Delta-G solvation = -11900.945761 eV Core-core repulsion = 9684.294622 eV Total energy + Delta-G solvation = -2216.651138 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -39.64809 -37.76777 -35.90740 -33.83195 -31.17331 -28.40214 -26.85694 -25.17667 -21.75903 -19.73473 -19.21479 -18.40501 -18.25204 -16.97236 -16.31097 -15.96272 -15.31818 -14.86184 -14.47542 -14.13786 -13.88090 -13.36217 -13.19498 -12.82631 -12.71807 -12.43592 -12.13951 -11.78297 -11.40497 -10.95618 -10.92116 -9.62681 -9.51206 -9.03115 -8.40905 -6.50107 0.09376 0.80575 1.09547 1.23741 1.32046 1.41831 1.89635 2.20503 2.91818 3.53187 3.97090 4.10565 4.27375 4.34525 4.46899 4.62644 4.74181 4.99472 5.21609 5.32218 5.51477 5.77910 6.03095 6.38045 6.54165 6.67647 6.95240 7.16481 8.75681 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.044378 B = 0.008725 C = 0.008248 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 630.798311 B = 3208.216927 C = 3394.090292 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.939 5.939 2 C 0.016 3.984 3 Si 0.943 3.057 4 H -0.253 1.253 5 H -0.291 1.291 6 H -0.246 1.246 7 C -0.549 4.549 8 H 0.027 0.973 9 C 0.234 3.766 10 H 0.043 0.957 11 N -0.835 5.835 12 C -0.078 4.078 13 C -0.213 4.213 14 S 0.112 5.888 15 C -0.199 4.199 16 C 0.154 3.846 17 O -0.590 6.590 18 C -0.124 4.124 19 H 0.269 0.731 20 H 0.337 0.663 21 H 0.317 0.683 22 H 0.162 0.838 23 H 0.084 0.916 24 H 0.080 0.920 25 H 0.402 0.598 26 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.070 -8.178 1.967 15.543 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.579 5.579 2 C -0.183 4.183 3 Si 0.767 3.233 4 H -0.178 1.178 5 H -0.218 1.218 6 H -0.170 1.170 7 C -0.589 4.589 8 H 0.045 0.955 9 C 0.122 3.878 10 H 0.061 0.939 11 N -0.368 5.368 12 C -0.090 4.090 13 C -0.348 4.348 14 S 0.376 5.624 15 C -0.316 4.316 16 C 0.075 3.925 17 O -0.400 6.400 18 C -0.156 4.156 19 H 0.078 0.922 20 H 0.149 0.851 21 H 0.133 0.867 22 H 0.179 0.821 23 H 0.102 0.898 24 H 0.098 0.902 25 H 0.253 0.747 26 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges 13.643 -9.247 0.942 16.508 hybrid contribution -1.536 2.011 0.929 2.696 sum 12.106 -7.236 1.872 14.228 Atomic orbital electron populations 1.70056 1.08266 1.28430 1.51109 1.25944 0.95615 1.03158 0.93593 0.85886 0.79159 0.78401 0.79846 1.17826 1.21776 1.16968 1.21858 0.92022 0.93153 1.51833 0.95506 1.17979 0.90549 0.88414 0.90897 0.93875 1.59661 1.66204 1.05410 1.05551 1.18947 0.99389 0.97652 0.92968 1.25372 1.09498 0.97068 1.02895 1.83472 1.63465 1.13776 1.01654 1.24474 1.10470 0.98210 0.98446 1.20477 0.87633 0.92570 0.91850 1.86572 1.35920 1.60758 1.56792 1.20123 1.01006 0.95005 0.99440 0.92152 0.85053 0.86735 0.82067 0.89828 0.90236 0.74702 0.84378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.94 -58.36 13.96 21.45 0.30 -58.06 15 2 C 0.02 0.92 5.47 84.66 0.46 1.38 15 3 Si 0.94 42.98 24.61 68.60 1.69 44.67 15 4 H -0.25 -10.62 7.01 99.48 0.70 -9.93 15 5 H -0.29 -13.24 7.11 99.48 0.71 -12.53 15 6 H -0.25 -10.63 6.54 99.48 0.65 -9.97 15 7 C -0.55 -31.63 9.29 25.60 0.24 -31.40 15 8 H 0.03 1.76 7.98 -2.91 -0.02 1.73 15 9 C 0.23 11.21 2.56 43.42 0.11 11.33 15 10 H 0.04 2.11 7.15 -2.39 -0.02 2.09 15 11 N -0.84 -35.96 9.00 -174.95 -1.57 -37.54 15 12 C -0.08 -3.36 4.80 -20.92 -0.10 -3.46 15 13 C -0.21 -8.26 10.41 66.72 0.69 -7.57 15 14 S 0.11 3.55 23.33 -56.49 -1.32 2.23 15 15 C -0.20 -6.49 6.14 24.59 0.15 -6.33 15 16 C 0.15 3.56 7.54 71.24 0.54 4.10 15 17 O -0.59 -14.67 13.64 -148.98 -2.03 -16.70 15 18 C -0.12 -4.77 9.82 21.21 0.21 -4.56 15 19 H 0.27 15.55 8.31 -92.71 -0.77 14.78 15 20 H 0.34 13.82 7.72 -89.69 -0.69 13.13 15 21 H 0.32 13.54 4.29 -89.70 -0.39 13.15 15 22 H 0.16 5.97 7.18 -2.91 -0.02 5.95 15 23 H 0.08 1.59 8.14 -2.39 -0.02 1.57 15 24 H 0.08 1.41 8.14 -2.38 -0.02 1.39 15 25 H 0.40 5.00 9.12 -74.06 -0.68 4.33 15 26 H 0.14 5.04 8.06 -2.91 -0.02 5.02 15 Total: -1.00 -69.97 237.32 -1.23 -71.19 By element: Atomic # 1 Polarization: 31.31 SS G_CDS: -0.59 Total: 30.71 kcal Atomic # 6 Polarization: -38.81 SS G_CDS: 2.30 Total: -36.51 kcal Atomic # 7 Polarization: -94.32 SS G_CDS: -1.27 Total: -95.60 kcal Atomic # 8 Polarization: -14.67 SS G_CDS: -2.03 Total: -16.70 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 1.69 Total: 44.67 kcal Atomic # 16 Polarization: 3.55 SS G_CDS: -1.32 Total: 2.23 kcal Total: -69.97 -1.23 -71.19 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104660640.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.847 kcal (2) G-P(sol) polarization free energy of solvation -69.968 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.121 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.194 kcal (6) G-S(sol) free energy of system = (1) + (5) -39.347 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds