Wall clock time and date at job start Mon Mar 30 2020 02:56:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30875 * 1 3 3 Si 1.86798 * 120.00413 * 2 1 4 4 H 1.48493 * 109.47326 * 270.00752 * 3 2 1 5 5 H 1.48506 * 109.46545 * 30.00502 * 3 2 1 6 6 H 1.48498 * 109.47210 * 150.00213 * 3 2 1 7 7 C 1.40075 * 119.99810 * 180.02562 * 2 1 3 8 8 H 1.07997 * 120.00251 * 179.97438 * 7 2 1 9 9 C 1.39917 * 119.99808 * 359.72157 * 7 2 1 10 10 C 1.38281 * 125.40333 * 179.71915 * 9 7 2 11 11 C 1.36807 * 114.19685 * 179.79047 * 10 9 7 12 12 C 1.50702 * 122.32989 * 180.22837 * 11 10 9 13 13 H 1.08990 * 109.47209 * 20.26920 * 12 11 10 14 14 N 1.46905 * 109.47162 * 140.27449 * 12 11 10 15 15 C 1.53006 * 109.47036 * 260.27013 * 12 11 10 16 16 O 1.42896 * 109.47356 * 174.99715 * 15 12 11 17 17 C 1.34540 * 115.34341 * 0.50299 * 11 10 9 18 18 S 1.75799 * 110.14449 * 359.72516 * 17 11 10 19 19 H 0.97001 * 119.99554 * 359.97438 * 1 2 3 20 20 H 1.08000 * 122.90390 * 359.97438 * 10 9 7 21 21 H 1.00895 * 110.99701 * 296.04394 * 14 12 11 22 22 H 1.00891 * 111.00061 * 59.99654 * 14 12 11 23 23 H 1.09001 * 109.46947 * 295.00094 * 15 12 11 24 24 H 1.09004 * 109.46495 * 55.00140 * 15 12 11 25 25 H 0.96692 * 114.00274 * 180.02562 * 16 15 12 26 26 H 1.07998 * 124.92913 * 179.72193 * 17 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3088 0.0000 0.0000 3 14 2.2429 1.6177 0.0000 4 1 2.4902 2.0464 -1.4000 5 1 1.4403 2.6525 0.7002 6 1 3.5404 1.4400 0.7000 7 6 2.0091 -1.2131 -0.0005 8 1 3.0890 -1.2132 -0.0010 9 6 1.3094 -2.4248 0.0048 10 6 1.8849 -3.6821 -0.0006 11 6 0.9836 -4.7113 0.0111 12 6 1.4107 -6.1566 0.0126 13 1 2.4411 -6.2306 0.3598 14 7 0.5356 -6.9248 0.9084 15 6 1.3089 -6.7200 -1.4063 16 8 1.8230 -8.0531 -1.4275 17 6 -0.3105 -4.3435 0.0152 18 16 -0.4417 -2.5904 0.0118 19 1 -0.4849 0.8401 0.0004 20 1 2.9535 -3.8383 -0.0102 21 1 0.6333 -6.6140 1.8632 22 1 -0.4259 -6.8718 0.6074 23 1 0.2650 -6.7280 -1.7200 24 1 1.8882 -6.0963 -2.0872 25 1 1.7902 -8.4735 -2.2976 26 1 -1.1474 -5.0262 0.0199 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104662566.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:56:05 Heat of formation + Delta-G solvation = -47.285411 kcal Electronic energy + Delta-G solvation = -11837.885598 eV Core-core repulsion = 9620.890243 eV Total energy + Delta-G solvation = -2216.995355 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -37.71495 -35.79539 -34.31404 -32.56553 -28.80582 -27.15295 -24.99876 -22.86411 -20.16646 -18.01267 -17.53712 -16.52007 -15.78504 -15.31292 -14.55312 -14.46561 -13.58159 -13.10800 -12.62368 -12.06656 -12.01063 -11.77885 -11.32286 -11.17267 -10.82736 -10.47396 -10.33034 -10.06597 -9.60320 -9.51756 -8.98905 -8.13295 -7.44122 -7.02192 -6.73279 -4.56592 2.56658 2.91130 2.96205 3.04699 3.61518 3.68877 3.94460 4.09158 4.78614 5.03411 5.20826 5.68217 5.80391 6.16325 6.31422 6.43108 6.65111 6.82473 7.21338 7.52003 7.61343 7.79018 7.97591 8.02609 8.04351 8.16133 8.50625 8.55797 9.82395 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.059460 B = 0.007953 C = 0.007401 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 470.794530 B = 3520.018790 C = 3782.242523 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.786 5.786 2 C 0.052 3.948 3 Si 0.934 3.066 4 H -0.266 1.266 5 H -0.273 1.273 6 H -0.259 1.259 7 C -0.392 4.392 8 H 0.093 0.907 9 C 0.038 3.962 10 C -0.349 4.349 11 C -0.071 4.071 12 C 0.152 3.848 13 H 0.079 0.921 14 N -0.832 5.832 15 C 0.093 3.907 16 O -0.566 6.566 17 C -0.410 4.410 18 S 0.128 5.872 19 H 0.296 0.704 20 H 0.099 0.901 21 H 0.337 0.663 22 H 0.333 0.667 23 H 0.040 0.960 24 H 0.048 0.952 25 H 0.366 0.634 26 H 0.115 0.885 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.131 -2.470 -1.784 3.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.414 5.414 2 C -0.168 4.168 3 Si 0.758 3.242 4 H -0.190 1.190 5 H -0.198 1.198 6 H -0.182 1.182 7 C -0.427 4.427 8 H 0.111 0.889 9 C -0.082 4.082 10 C -0.374 4.374 11 C -0.085 4.085 12 C 0.038 3.962 13 H 0.097 0.903 14 N -0.359 5.359 15 C 0.015 3.985 16 O -0.370 6.370 17 C -0.545 4.545 18 S 0.389 5.611 19 H 0.108 0.892 20 H 0.117 0.883 21 H 0.149 0.851 22 H 0.145 0.855 23 H 0.059 0.941 24 H 0.066 0.934 25 H 0.211 0.789 26 H 0.133 0.867 Dipole moment (debyes) X Y Z Total from point charges -0.771 -1.897 -1.363 2.460 hybrid contribution 0.916 0.621 -0.451 1.195 sum 0.145 -1.276 -1.815 2.223 Atomic orbital electron populations 1.68865 1.07596 1.30480 1.34437 1.26195 0.95091 1.02558 0.92990 0.85840 0.80079 0.78803 0.79523 1.19049 1.19802 1.18243 1.19164 0.95333 0.88838 1.39412 0.88937 1.21816 0.94789 0.95691 0.95901 1.19564 0.97578 0.90854 1.29398 1.18729 0.93158 0.94403 1.02207 1.19977 0.97176 0.87691 0.91315 0.90317 1.59107 1.11238 1.59741 1.05790 1.22190 0.96990 0.82281 0.97059 1.86567 1.86340 1.29169 1.34896 1.25145 0.97848 1.02185 1.29366 1.84459 1.05900 0.95539 1.75218 0.89172 0.88269 0.85144 0.85503 0.94126 0.93385 0.78883 0.86690 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.79 -19.16 10.65 55.56 0.59 -18.57 15 2 C 0.05 1.23 5.50 -17.27 -0.09 1.13 15 3 Si 0.93 17.69 29.56 -169.99 -5.03 12.67 15 4 H -0.27 -4.96 7.11 56.52 0.40 -4.56 15 5 H -0.27 -5.03 7.11 56.52 0.40 -4.63 15 6 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 7 C -0.39 -10.07 9.29 -38.26 -0.36 -10.43 15 8 H 0.09 2.26 7.85 -52.49 -0.41 1.85 15 9 C 0.04 1.02 6.19 -38.94 -0.24 0.78 15 10 C -0.35 -8.85 9.95 -40.08 -0.40 -9.25 15 11 C -0.07 -1.64 4.83 -106.45 -0.51 -2.16 15 12 C 0.15 3.04 3.33 -68.86 -0.23 2.81 15 13 H 0.08 1.64 8.08 -51.93 -0.42 1.22 15 14 N -0.83 -15.10 9.03 -5.65 -0.05 -15.15 15 15 C 0.09 1.66 6.62 37.16 0.25 1.91 15 16 O -0.57 -9.33 13.61 -35.23 -0.48 -9.81 15 17 C -0.41 -9.53 10.42 29.42 0.31 -9.23 15 18 S 0.13 3.21 20.27 -107.50 -2.18 1.03 15 19 H 0.30 6.48 8.30 -40.82 -0.34 6.14 15 20 H 0.10 2.44 8.06 -52.49 -0.42 2.02 15 21 H 0.34 5.90 9.06 -39.29 -0.36 5.54 15 22 H 0.33 5.79 7.71 -39.30 -0.30 5.49 15 23 H 0.04 0.71 8.14 -51.93 -0.42 0.28 15 24 H 0.05 0.85 8.14 -51.93 -0.42 0.43 15 25 H 0.37 4.08 9.12 45.56 0.42 4.49 15 26 H 0.12 2.46 7.16 -52.49 -0.38 2.08 15 LS Contribution 242.18 15.07 3.65 3.65 Total: -1.00 -28.07 242.18 -6.63 -34.70 By element: Atomic # 1 Polarization: 17.76 SS G_CDS: -1.85 Total: 15.90 kcal Atomic # 6 Polarization: -23.14 SS G_CDS: -1.28 Total: -24.42 kcal Atomic # 7 Polarization: -34.26 SS G_CDS: 0.54 Total: -33.72 kcal Atomic # 8 Polarization: -9.33 SS G_CDS: -0.48 Total: -9.81 kcal Atomic # 14 Polarization: 17.69 SS G_CDS: -5.03 Total: 12.67 kcal Atomic # 16 Polarization: 3.21 SS G_CDS: -2.18 Total: 1.03 kcal Total LS contribution 3.65 Total: 3.65 kcal Total: -28.07 -6.63 -34.70 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104662566.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -12.585 kcal (2) G-P(sol) polarization free energy of solvation -28.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -40.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.627 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.700 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds