Wall clock time and date at job start Mon Mar 30 2020 02:57:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86802 * 119.99595 * 2 1 4 4 H 1.48493 * 109.47346 * 240.00356 * 3 2 1 5 5 H 1.48507 * 109.47059 * 0.02562 * 3 2 1 6 6 H 1.48503 * 109.46882 * 119.99808 * 3 2 1 7 7 C 1.37870 * 120.00374 * 180.02562 * 2 1 3 8 8 H 1.08005 * 119.99915 * 180.02562 * 7 2 1 9 9 C 1.50701 * 119.99918 * 359.97438 * 7 2 1 10 10 H 1.08999 * 109.47318 * 60.00349 * 9 7 2 11 11 N 1.46900 * 109.47066 * 299.99659 * 9 7 2 12 12 C 1.50701 * 109.46947 * 180.02562 * 9 7 2 13 13 C 1.38419 * 122.54666 * 100.16997 * 12 9 7 14 14 C 1.33389 * 114.92643 * 180.27348 * 13 12 9 15 15 S 1.75881 * 109.59073 * 359.76858 * 14 13 12 16 16 C 1.33389 * 122.53685 * 279.99884 * 12 9 7 17 17 C 1.50699 * 125.20348 * 0.02562 * 16 12 9 18 18 O 1.42903 * 109.47152 * 89.72431 * 17 16 12 19 19 H 0.96994 * 120.00176 * 359.97438 * 1 2 3 20 20 H 1.00904 * 110.99948 * 176.04535 * 11 9 7 21 21 H 1.00893 * 111.00227 * 300.00295 * 11 9 7 22 22 H 1.08005 * 122.53678 * 0.03829 * 13 12 9 23 23 H 1.08004 * 125.20228 * 179.79503 * 14 13 12 24 24 H 1.08997 * 109.47198 * 329.72109 * 17 16 12 25 25 H 1.09008 * 109.47393 * 209.71826 * 17 16 12 26 26 H 0.96700 * 114.00311 * 180.02562 * 18 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1027 1.6966 -1.2125 5 1 1.2839 2.7465 0.0006 6 1 3.1028 1.6965 1.2126 7 6 2.0046 -1.1939 -0.0005 8 1 3.0846 -1.1939 -0.0001 9 6 1.2512 -2.4991 -0.0005 10 1 0.6242 -2.5567 -0.8903 11 7 0.4071 -2.5772 1.1993 12 6 2.2305 -3.6445 -0.0005 13 6 2.5579 -4.3443 1.1479 14 6 3.4452 -5.3252 0.9749 15 16 3.9126 -5.4055 -0.7188 16 6 2.8452 -4.0628 -1.1080 17 6 2.6586 -3.4712 -2.4814 18 8 3.6042 -2.4181 -2.6788 19 1 -0.4850 0.8400 0.0004 20 1 -0.1568 -3.4139 1.1908 21 1 0.9654 -2.5260 2.0381 22 1 2.1303 -4.1113 2.1120 23 1 3.8190 -5.9714 1.7553 24 1 1.6478 -3.0736 -2.5715 25 1 2.8135 -4.2443 -3.2342 26 1 3.5416 -1.9903 -3.5438 RHF calculation, no. of doubly occupied orbitals= 36 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104663057.mol2 26 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:57:21 Heat of formation + Delta-G solvation = -10.888124 kcal Electronic energy + Delta-G solvation = -12296.618966 eV Core-core repulsion = 10081.201916 eV Total energy + Delta-G solvation = -2215.417050 eV No. of doubly occupied orbitals = 36 Molecular weight (most abundant/longest-lived isotopes) = 213.056 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -38.20204 -35.88426 -33.52702 -31.13284 -30.10138 -26.18262 -24.95921 -22.34740 -21.44065 -17.48252 -16.92270 -16.67055 -16.21441 -15.05597 -14.40303 -13.96613 -13.84164 -13.10911 -12.58390 -12.30099 -12.09253 -11.49695 -11.20942 -10.92392 -10.68241 -10.65715 -10.40913 -9.73028 -9.40656 -9.15954 -8.35840 -8.10533 -7.61702 -7.07414 -5.79874 -3.91602 1.54807 2.21809 2.55984 3.40381 3.41701 3.45133 3.52557 4.57498 5.05184 5.40663 5.48619 5.59736 5.69312 6.06895 6.12065 6.19229 6.41552 6.73706 6.93760 7.19485 7.50489 8.02760 8.20207 8.26012 8.68106 9.03770 9.22447 9.75330 11.24687 Molecular weight = 213.06amu Principal moments of inertia in cm(-1) A = 0.035012 B = 0.011555 C = 0.009984 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 799.523142 B = 2422.573276 C = 2803.745476 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.854 5.854 2 C 0.081 3.919 3 Si 0.885 3.115 4 H -0.278 1.278 5 H -0.290 1.290 6 H -0.280 1.280 7 C -0.511 4.511 8 H 0.055 0.945 9 C 0.274 3.726 10 H 0.047 0.953 11 N -0.810 5.810 12 C -0.080 4.080 13 C -0.124 4.124 14 C -0.217 4.217 15 S 0.040 5.960 16 C -0.186 4.186 17 C 0.162 3.838 18 O -0.552 6.552 19 H 0.254 0.746 20 H 0.298 0.702 21 H 0.318 0.682 22 H 0.134 0.866 23 H 0.155 0.845 24 H 0.069 0.931 25 H 0.037 0.963 26 H 0.371 0.629 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.280 -8.726 -2.394 10.010 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.490 5.490 2 C -0.124 4.124 3 Si 0.713 3.287 4 H -0.203 1.203 5 H -0.216 1.216 6 H -0.205 1.205 7 C -0.550 4.550 8 H 0.073 0.927 9 C 0.162 3.838 10 H 0.065 0.935 11 N -0.336 5.336 12 C -0.094 4.094 13 C -0.156 4.156 14 C -0.352 4.352 15 S 0.304 5.696 16 C -0.302 4.302 17 C 0.083 3.917 18 O -0.356 6.356 19 H 0.064 0.936 20 H 0.108 0.892 21 H 0.131 0.869 22 H 0.152 0.848 23 H 0.173 0.827 24 H 0.087 0.913 25 H 0.055 0.945 26 H 0.217 0.783 Dipole moment (debyes) X Y Z Total from point charges 4.931 -9.038 -2.877 10.690 hybrid contribution 0.052 1.000 0.634 1.185 sum 4.983 -8.038 -2.243 9.719 Atomic orbital electron populations 1.70097 1.05611 1.25618 1.47672 1.24922 0.94588 0.98429 0.94501 0.86809 0.79646 0.83667 0.78587 1.20323 1.21586 1.20538 1.20746 0.92312 0.88906 1.53061 0.92658 1.17996 0.86795 0.88319 0.90677 0.93523 1.59173 1.28105 1.41856 1.04453 1.20776 0.99992 0.98084 0.90572 1.20123 0.99421 0.96223 0.99863 1.25378 1.05537 1.05583 0.98680 1.83751 1.47143 1.35104 1.03620 1.23750 1.04838 1.02320 0.99303 1.20154 0.93330 0.88147 0.90094 1.86659 1.58116 1.51421 1.39430 0.93582 0.89214 0.86947 0.84835 0.82709 0.91293 0.94525 0.78312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.85 -24.87 12.77 55.43 0.71 -24.16 15 2 C 0.08 2.28 5.39 -17.82 -0.10 2.18 15 3 Si 0.88 21.84 29.54 -169.99 -5.02 16.82 15 4 H -0.28 -6.80 7.11 56.52 0.40 -6.40 15 5 H -0.29 -7.08 7.11 56.52 0.40 -6.68 15 6 H -0.28 -6.92 7.11 56.52 0.40 -6.52 15 7 C -0.51 -14.14 8.71 -34.44 -0.30 -14.44 15 8 H 0.06 1.61 7.74 -52.48 -0.41 1.21 15 9 C 0.27 6.77 2.50 -70.02 -0.18 6.59 15 10 H 0.05 1.26 7.01 -51.93 -0.36 0.90 15 11 N -0.81 -18.87 8.11 -6.65 -0.05 -18.92 15 12 C -0.08 -1.73 4.91 -106.25 -0.52 -2.25 15 13 C -0.12 -2.35 9.36 -41.21 -0.39 -2.74 15 14 C -0.22 -3.61 11.23 29.04 0.33 -3.28 15 15 S 0.04 0.68 23.33 -107.50 -2.51 -1.82 15 16 C -0.19 -3.74 6.13 -36.00 -0.22 -3.96 15 17 C 0.16 2.99 7.20 36.01 0.26 3.25 15 18 O -0.55 -10.61 13.64 -35.23 -0.48 -11.09 15 19 H 0.25 7.14 8.31 -40.82 -0.34 6.80 15 20 H 0.30 6.15 9.06 -39.29 -0.36 5.80 15 21 H 0.32 7.09 7.58 -39.30 -0.30 6.79 15 22 H 0.13 2.33 6.77 -52.48 -0.36 1.98 15 23 H 0.16 2.07 8.06 -52.48 -0.42 1.64 15 24 H 0.07 1.32 6.86 -51.93 -0.36 0.97 15 25 H 0.04 0.56 8.14 -51.92 -0.42 0.14 15 26 H 0.37 5.14 9.12 45.56 0.42 5.56 15 LS Contribution 242.78 15.07 3.66 3.66 Total: -1.00 -31.49 242.78 -6.51 -38.00 By element: Atomic # 1 Polarization: 13.87 SS G_CDS: -1.70 Total: 12.17 kcal Atomic # 6 Polarization: -13.53 SS G_CDS: -1.11 Total: -14.65 kcal Atomic # 7 Polarization: -43.74 SS G_CDS: 0.65 Total: -43.08 kcal Atomic # 8 Polarization: -10.61 SS G_CDS: -0.48 Total: -11.09 kcal Atomic # 14 Polarization: 21.84 SS G_CDS: -5.02 Total: 16.82 kcal Atomic # 16 Polarization: 0.68 SS G_CDS: -2.51 Total: -1.82 kcal Total LS contribution 3.66 Total: 3.66 kcal Total: -31.49 -6.51 -38.00 kcal The number of atoms in the molecule is 26 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104663057.mol2 26 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 27.110 kcal (2) G-P(sol) polarization free energy of solvation -31.488 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -4.378 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.510 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.998 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds