Wall clock time and date at job start Mon Mar 30 2020 02:29:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46898 * 109.47147 * 2 1 4 4 C 1.46897 * 110.99862 * 180.02562 * 3 2 1 5 5 H 1.09000 * 109.49831 * 325.05391 * 4 3 2 6 6 C 1.53046 * 109.49418 * 204.99842 * 4 3 2 7 7 C 1.53041 * 109.53911 * 178.68077 * 6 4 3 8 8 H 1.09000 * 109.49655 * 301.38187 * 7 6 4 9 9 C 1.52990 * 109.50006 * 181.31705 * 7 6 4 10 10 C 1.53193 * 109.30867 * 61.36255 * 7 6 4 11 11 N 1.46920 * 108.78060 * 305.36512 * 10 7 6 12 12 C 1.36935 * 120.63256 * 233.58902 * 11 10 7 13 13 H 1.08013 * 120.00228 * 152.60682 * 12 11 10 14 14 C 1.38807 * 120.00096 * 332.60859 * 12 11 10 15 15 N 1.31629 * 120.00124 * 159.29991 * 14 12 11 16 16 Si 1.86803 * 120.00056 * 339.30117 * 14 12 11 17 17 H 1.48496 * 109.46753 * 92.95616 * 16 14 12 18 18 H 1.48495 * 109.46886 * 212.95853 * 16 14 12 19 19 H 1.48501 * 109.46810 * 332.95713 * 16 14 12 20 20 C 1.46925 * 118.73929 * 53.60820 * 11 10 7 21 21 H 1.09008 * 109.47221 * 180.02562 * 1 2 3 22 22 H 1.08995 * 109.47146 * 299.99688 * 1 2 3 23 23 H 1.08994 * 109.47081 * 60.00266 * 1 2 3 24 24 H 1.08998 * 109.47002 * 239.99558 * 2 1 3 25 25 H 1.09003 * 109.47178 * 119.99878 * 2 1 3 26 26 H 1.00902 * 110.99757 * 303.95277 * 3 2 1 27 27 H 1.08999 * 109.45725 * 58.66345 * 6 4 3 28 28 H 1.08997 * 109.45859 * 298.70219 * 6 4 3 29 29 H 1.09004 * 109.47461 * 59.99739 * 9 7 6 30 30 H 1.09001 * 109.47060 * 299.99770 * 9 7 6 31 31 H 1.09002 * 109.47771 * 180.02562 * 9 7 6 32 32 H 1.08996 * 109.59005 * 65.15767 * 10 7 6 33 33 H 1.09010 * 109.58461 * 185.57958 * 10 7 6 34 34 H 0.96994 * 119.99754 * 180.02562 * 15 14 12 35 35 H 1.08996 * 109.59253 * 186.60426 * 20 11 10 36 36 H 1.08998 * 109.70394 * 66.24606 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4881 1.4241 -0.0006 5 1 3.8745 0.5918 0.5877 6 6 3.9641 2.7447 0.6091 7 6 5.4939 2.7727 0.6391 8 1 5.8619 1.9279 1.2214 9 6 5.9684 4.0790 1.2787 10 6 6.0304 2.6800 -0.7928 11 7 5.4612 1.4874 -1.4349 12 6 6.2752 0.5533 -2.0182 13 1 5.9537 -0.4756 -2.0871 14 6 7.5134 0.9287 -2.5209 15 7 8.4517 0.0237 -2.7028 16 14 7.8481 2.7183 -2.9391 17 1 8.4661 3.3927 -1.7694 18 1 8.7734 2.7909 -4.0983 19 1 6.5708 3.3937 -3.2822 20 6 4.0020 1.3161 -1.4397 21 1 -0.3634 -1.0277 0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8933 -0.5139 -0.8899 25 1 1.8934 -0.5138 0.8900 26 1 1.6442 1.9012 -0.7814 27 1 3.5793 2.8352 1.6249 28 1 3.5974 3.5758 0.0066 29 1 5.5840 4.1459 2.2965 30 1 5.6012 4.9234 0.6954 31 1 7.0580 4.0987 1.2994 32 1 5.7387 3.5697 -1.3507 33 1 7.1174 2.5997 -0.7713 34 1 9.3170 0.2861 -3.0538 35 1 3.7503 0.3361 -1.8450 36 1 3.5428 2.0932 -2.0508 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108019902.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:48 Heat of formation + Delta-G solvation = 9.475343 kcal Electronic energy + Delta-G solvation = -14989.320271 eV Core-core repulsion = 12701.418227 eV Total energy + Delta-G solvation = -2287.902044 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.24 seconds Orbital eigenvalues (eV) -38.56145 -35.66838 -33.47776 -31.71480 -30.85055 -27.47170 -26.19452 -25.26371 -22.20087 -21.69040 -20.62258 -19.39431 -16.76682 -15.48571 -15.39826 -14.71789 -14.26360 -14.06183 -13.75522 -13.31497 -13.08980 -12.64939 -12.22940 -11.95802 -11.77816 -11.57451 -11.52217 -11.31028 -11.10590 -10.67300 -10.56449 -10.48771 -10.09095 -9.80939 -9.64094 -9.43680 -8.72695 -8.12130 -6.92314 -5.95708 -3.31399 3.32417 3.48018 3.51595 4.36161 4.53020 5.02260 5.17335 5.32071 5.35198 5.42338 5.50602 5.51128 5.60282 5.69512 5.89678 5.93233 6.04881 6.07690 6.16566 6.20178 6.24193 6.25906 6.33732 6.50517 6.56370 6.62718 6.70391 6.81812 6.99842 7.35190 7.65026 7.96073 8.31821 8.93651 9.71604 10.09830 11.20279 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.031717 B = 0.010203 C = 0.008372 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 882.595921 B = 2743.659542 C = 3343.721132 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 N -0.687 5.687 4 C 0.067 3.933 5 H 0.076 0.924 6 C -0.089 4.089 7 C -0.111 4.111 8 H 0.071 0.929 9 C -0.143 4.143 10 C 0.132 3.868 11 N -0.603 5.603 12 C -0.261 4.261 13 H 0.084 0.916 14 C 0.024 3.976 15 N -0.908 5.908 16 Si 0.883 3.117 17 H -0.287 1.287 18 H -0.303 1.303 19 H -0.271 1.271 20 C 0.127 3.873 21 H 0.056 0.944 22 H 0.059 0.941 23 H 0.051 0.949 24 H 0.031 0.969 25 H 0.068 0.932 26 H 0.335 0.665 27 H 0.057 0.943 28 H 0.053 0.947 29 H 0.050 0.950 30 H 0.049 0.951 31 H 0.052 0.948 32 H 0.024 0.976 33 H 0.071 0.929 34 H 0.263 0.737 35 H 0.057 0.943 36 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.130 4.678 6.164 13.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.077 4.077 3 N -0.317 5.317 4 C -0.044 4.044 5 H 0.095 0.905 6 C -0.127 4.127 7 C -0.132 4.132 8 H 0.090 0.910 9 C -0.201 4.201 10 C 0.006 3.994 11 N -0.327 5.327 12 C -0.389 4.389 13 H 0.101 0.899 14 C -0.175 4.175 15 N -0.551 5.551 16 Si 0.713 3.287 17 H -0.215 1.215 18 H -0.231 1.231 19 H -0.196 1.196 20 C -0.001 4.001 21 H 0.075 0.925 22 H 0.078 0.922 23 H 0.070 0.930 24 H 0.049 0.951 25 H 0.087 0.913 26 H 0.153 0.847 27 H 0.075 0.925 28 H 0.072 0.928 29 H 0.069 0.931 30 H 0.068 0.932 31 H 0.071 0.929 32 H 0.042 0.958 33 H 0.089 0.911 34 H 0.072 0.928 35 H 0.076 0.924 36 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -11.026 4.664 6.766 13.752 hybrid contribution 0.552 0.676 -1.264 1.536 sum -10.474 5.340 5.502 12.981 Atomic orbital electron populations 1.21763 0.95504 1.01307 1.02011 1.21919 0.94979 0.90171 1.00671 1.60723 1.08459 1.13084 1.49425 1.22148 0.85699 0.98576 0.98014 0.90531 1.21392 0.94612 0.96591 1.00094 1.21653 0.95361 0.97527 0.98628 0.91032 1.21766 1.00913 0.97530 0.99860 1.21407 0.98105 0.89296 0.90569 1.44268 1.00552 1.23774 1.64065 1.18910 0.97800 0.89696 1.32529 0.89878 1.25271 0.96302 0.97127 0.98784 1.69842 1.03825 1.33459 1.47988 0.86940 0.77589 0.86886 0.77241 1.21482 1.23144 1.19644 1.21588 0.85427 0.99146 0.93939 0.92538 0.92165 0.93024 0.95063 0.91315 0.84720 0.92456 0.92832 0.93109 0.93151 0.92903 0.95840 0.91057 0.92757 0.92448 0.96203 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.56 10.17 37.16 0.38 -1.18 16 2 C 0.05 0.68 6.20 -3.82 -0.02 0.66 16 3 N -0.69 -9.88 6.25 -106.60 -0.67 -10.55 16 4 C 0.07 1.14 2.62 -67.59 -0.18 0.96 16 5 H 0.08 1.43 7.80 -51.93 -0.41 1.02 16 6 C -0.09 -1.46 4.77 -26.69 -0.13 -1.59 16 7 C -0.11 -2.02 2.87 -90.50 -0.26 -2.28 16 8 H 0.07 1.38 8.14 -51.93 -0.42 0.96 16 9 C -0.14 -2.18 9.20 37.15 0.34 -1.84 16 10 C 0.13 2.94 3.49 -3.71 -0.01 2.92 16 11 N -0.60 -14.64 2.77 -172.32 -0.48 -15.12 16 12 C -0.26 -7.43 10.03 -15.06 -0.15 -7.58 16 13 H 0.08 2.52 8.06 -52.48 -0.42 2.10 16 14 C 0.02 0.71 5.23 -17.43 -0.09 0.62 16 15 N -0.91 -28.15 13.97 55.49 0.78 -27.37 16 16 Si 0.88 22.77 24.35 -169.99 -4.14 18.63 16 17 H -0.29 -7.13 6.62 56.52 0.37 -6.75 16 18 H -0.30 -7.91 7.11 56.52 0.40 -7.51 16 19 H -0.27 -6.91 6.64 56.52 0.38 -6.54 16 20 C 0.13 2.56 5.77 -3.71 -0.02 2.53 16 21 H 0.06 0.53 8.14 -51.92 -0.42 0.10 16 22 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 23 H 0.05 0.52 8.14 -51.93 -0.42 0.09 16 24 H 0.03 0.44 7.57 -51.93 -0.39 0.04 16 25 H 0.07 0.92 8.06 -51.93 -0.42 0.50 16 26 H 0.34 4.55 8.41 -39.29 -0.33 4.21 16 27 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 28 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 30 H 0.05 0.73 8.14 -51.93 -0.42 0.30 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.02 0.53 7.08 -51.93 -0.37 0.16 16 33 H 0.07 1.75 4.50 -51.92 -0.23 1.51 16 34 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 35 H 0.06 1.18 7.41 -51.93 -0.38 0.79 16 36 H 0.02 0.40 8.04 -51.93 -0.42 -0.02 16 LS Contribution 276.58 15.07 4.17 4.17 Total: -1.00 -30.07 276.58 -6.85 -36.92 By element: Atomic # 1 Polarization: 6.46 SS G_CDS: -6.37 Total: 0.10 kcal Atomic # 6 Polarization: -6.63 SS G_CDS: -0.14 Total: -6.78 kcal Atomic # 7 Polarization: -52.67 SS G_CDS: -0.37 Total: -53.04 kcal Atomic # 14 Polarization: 22.77 SS G_CDS: -4.14 Total: 18.63 kcal Total LS contribution 4.17 Total: 4.17 kcal Total: -30.07 -6.85 -36.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108019902.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.392 kcal (2) G-P(sol) polarization free energy of solvation -30.065 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.851 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.916 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.475 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.24 seconds