Wall clock time and date at job start Mon Mar 30 2020 02:29:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46901 * 109.47370 * 2 1 4 4 C 1.46906 * 110.99885 * 180.02562 * 3 2 1 5 5 H 1.08992 * 109.49555 * 35.06924 * 4 3 2 6 6 C 1.53043 * 109.51861 * 155.14855 * 4 3 2 7 7 C 1.53045 * 109.53563 * 181.32972 * 6 4 3 8 8 H 1.08995 * 109.52563 * 178.66626 * 7 6 4 9 9 C 1.53007 * 109.49289 * 58.58915 * 7 6 4 10 10 C 1.53188 * 109.31508 * 298.64086 * 7 6 4 11 11 N 1.46923 * 108.77795 * 54.62815 * 10 7 6 12 12 C 1.36944 * 120.62639 * 126.41443 * 11 10 7 13 13 H 1.08000 * 119.99685 * 207.67413 * 12 11 10 14 14 C 1.38806 * 120.00270 * 27.68238 * 12 11 10 15 15 N 1.31621 * 120.00042 * 17.34641 * 14 12 11 16 16 Si 1.86806 * 119.99936 * 197.35592 * 14 12 11 17 17 H 1.48502 * 109.47103 * 89.99500 * 16 14 12 18 18 H 1.48503 * 109.46676 * 209.99683 * 16 14 12 19 19 H 1.48494 * 109.46904 * 329.99598 * 16 14 12 20 20 C 1.46923 * 118.74409 * 306.39703 * 11 10 7 21 21 H 1.08998 * 109.47333 * 179.97438 * 1 2 3 22 22 H 1.09006 * 109.46747 * 299.99838 * 1 2 3 23 23 H 1.09001 * 109.46766 * 59.99112 * 1 2 3 24 24 H 1.09007 * 109.46921 * 240.00681 * 2 1 3 25 25 H 1.09002 * 109.47428 * 120.00533 * 2 1 3 26 26 H 1.00896 * 111.00673 * 303.95957 * 3 2 1 27 27 H 1.09002 * 109.45902 * 61.31589 * 6 4 3 28 28 H 1.08993 * 109.46323 * 301.35381 * 6 4 3 29 29 H 1.08999 * 109.47082 * 300.16064 * 9 7 6 30 30 H 1.08995 * 109.47337 * 60.16041 * 9 7 6 31 31 H 1.09002 * 109.46728 * 180.16290 * 9 7 6 32 32 H 1.09000 * 109.58703 * 174.41959 * 10 7 6 33 33 H 1.09003 * 109.58678 * 294.84301 * 10 7 6 34 34 H 0.96998 * 119.99625 * 180.02562 * 15 14 12 35 35 H 1.08998 * 109.59103 * 173.39755 * 20 11 10 36 36 H 1.09002 * 109.58107 * 293.82156 * 20 11 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4883 1.4241 -0.0006 5 1 3.8740 0.5932 -0.5912 6 6 3.9643 2.7462 -0.6068 7 6 5.4942 2.7734 -0.6381 8 1 5.8328 3.7049 -1.0915 9 6 6.0092 1.5892 -1.4588 10 6 6.0320 2.6761 0.7930 11 7 5.4626 1.4820 1.4321 12 6 6.2767 0.5458 2.0118 13 1 5.9566 -0.4839 2.0739 14 6 7.5130 0.9201 2.5199 15 7 7.7689 2.1885 2.7607 16 14 8.8138 -0.3764 2.8616 17 1 9.6488 -0.5714 1.6491 18 1 9.6728 0.0693 3.9879 19 1 8.1536 -1.6576 3.2193 20 6 4.0033 1.3116 1.4377 21 1 -0.3634 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8901 23 1 -0.3633 0.5140 -0.8899 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5139 0.8899 26 1 1.6442 1.9014 -0.7812 27 1 3.5987 3.5757 -0.0015 28 1 3.5786 2.8400 -1.6219 29 1 5.6694 0.6580 -1.0057 30 1 5.6263 1.6588 -2.4769 31 1 7.0989 1.6074 -1.4784 32 1 7.1188 2.5953 0.7702 33 1 5.7413 3.5645 1.3538 34 1 8.6330 2.4501 3.1153 35 1 3.7515 0.3305 1.8404 36 1 3.5472 2.0887 2.0510 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000108019904.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:29:50 Heat of formation + Delta-G solvation = 9.155007 kcal Electronic energy + Delta-G solvation = -15100.561667 eV Core-core repulsion = 12812.645732 eV Total energy + Delta-G solvation = -2287.915935 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.26 seconds Orbital eigenvalues (eV) -38.43022 -35.46179 -33.19184 -31.20332 -30.34675 -27.10832 -26.07486 -25.24618 -22.13423 -21.67705 -20.75160 -18.12529 -16.62741 -15.47565 -14.97798 -14.55348 -14.26081 -13.68485 -13.39185 -13.18608 -12.97291 -12.58120 -12.17450 -11.73010 -11.60911 -11.34126 -11.07491 -10.90523 -10.82277 -10.57752 -10.40130 -10.12586 -10.09192 -9.77829 -9.50896 -9.25464 -8.44523 -8.02398 -6.59415 -5.73707 -3.15060 3.40186 3.47039 3.48168 4.41139 4.60798 5.22469 5.36690 5.40805 5.49375 5.58694 5.64445 5.69441 5.81561 5.94914 6.03921 6.11555 6.15220 6.25783 6.27293 6.44505 6.50206 6.60417 6.74527 6.89352 6.94725 7.04330 7.12494 7.39461 7.52353 7.71800 7.76141 7.84739 8.51103 9.27297 9.91330 10.48166 11.34897 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.034735 B = 0.009339 C = 0.008221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 805.917032 B = 2997.414633 C = 3405.234507 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.054 3.946 3 N -0.687 5.687 4 C 0.068 3.932 5 H 0.044 0.956 6 C -0.103 4.103 7 C -0.116 4.116 8 H 0.056 0.944 9 C -0.132 4.132 10 C 0.175 3.825 11 N -0.589 5.589 12 C -0.248 4.248 13 H 0.064 0.936 14 C 0.002 3.998 15 N -0.903 5.903 16 Si 0.900 3.100 17 H -0.288 1.288 18 H -0.292 1.292 19 H -0.280 1.280 20 C 0.162 3.838 21 H 0.054 0.946 22 H 0.062 0.938 23 H 0.048 0.952 24 H 0.022 0.978 25 H 0.073 0.927 26 H 0.331 0.669 27 H 0.061 0.939 28 H 0.041 0.959 29 H 0.064 0.936 30 H 0.029 0.971 31 H 0.047 0.953 32 H 0.088 0.912 33 H 0.017 0.983 34 H 0.253 0.747 35 H 0.047 0.953 36 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.818 -1.237 -7.539 11.667 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.075 4.075 3 N -0.319 5.319 4 C -0.042 4.042 5 H 0.062 0.938 6 C -0.141 4.141 7 C -0.137 4.137 8 H 0.074 0.926 9 C -0.189 4.189 10 C 0.049 3.951 11 N -0.312 5.312 12 C -0.378 4.378 13 H 0.081 0.919 14 C -0.196 4.196 15 N -0.547 5.547 16 Si 0.730 3.270 17 H -0.215 1.215 18 H -0.218 1.218 19 H -0.205 1.205 20 C 0.035 3.965 21 H 0.074 0.926 22 H 0.081 0.919 23 H 0.067 0.933 24 H 0.041 0.959 25 H 0.091 0.909 26 H 0.148 0.852 27 H 0.080 0.920 28 H 0.059 0.941 29 H 0.083 0.917 30 H 0.048 0.952 31 H 0.066 0.934 32 H 0.106 0.894 33 H 0.035 0.965 34 H 0.063 0.937 35 H 0.065 0.935 36 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges -8.716 -1.122 -6.752 11.082 hybrid contribution 0.910 -0.855 -0.760 1.462 sum -7.807 -1.977 -7.511 11.012 Atomic orbital electron populations 1.21765 0.95567 1.01185 1.02035 1.21930 0.94920 0.90230 1.00432 1.60529 1.09129 1.12929 1.49283 1.22206 0.85097 0.96984 0.99963 0.93788 1.21581 0.96684 0.97388 0.98482 1.21778 0.94134 0.97385 1.00422 0.92566 1.21699 1.00378 0.99765 0.97078 1.20829 0.99531 0.88269 0.86461 1.44005 0.99428 1.23701 1.64075 1.19165 0.98040 0.88878 1.31685 0.91853 1.24997 0.99895 0.95934 0.98798 1.70043 1.22568 1.14877 1.47243 0.86326 0.82010 0.81231 0.77451 1.21522 1.21793 1.20503 1.20792 0.85173 0.98765 0.91784 0.92647 0.91906 0.93267 0.95938 0.90900 0.85184 0.92018 0.94068 0.91704 0.95179 0.93409 0.89419 0.96487 0.93712 0.93455 0.95768 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.64 10.17 37.16 0.38 -1.26 16 2 C 0.05 0.75 6.20 -3.82 -0.02 0.73 16 3 N -0.69 -10.60 6.31 -106.59 -0.67 -11.28 16 4 C 0.07 1.24 2.30 -67.59 -0.16 1.08 16 5 H 0.04 0.85 5.99 -51.93 -0.31 0.54 16 6 C -0.10 -1.81 4.72 -26.69 -0.13 -1.94 16 7 C -0.12 -2.26 3.21 -90.50 -0.29 -2.55 16 8 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 9 C -0.13 -2.48 8.71 37.16 0.32 -2.15 16 10 C 0.18 4.24 4.70 -3.71 -0.02 4.22 16 11 N -0.59 -14.95 2.43 -172.33 -0.42 -15.37 16 12 C -0.25 -6.87 9.58 -15.06 -0.14 -7.02 16 13 H 0.06 1.74 7.89 -52.49 -0.41 1.33 16 14 C 0.00 0.06 4.91 -17.43 -0.09 -0.03 16 15 N -0.90 -26.49 11.19 55.49 0.62 -25.87 16 16 Si 0.90 21.93 29.59 -169.99 -5.03 16.90 16 17 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 19 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 20 C 0.16 3.58 5.98 -3.71 -0.02 3.56 16 21 H 0.05 0.54 8.14 -51.93 -0.42 0.11 16 22 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 23 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.02 0.31 8.06 -51.92 -0.42 -0.11 16 25 H 0.07 1.10 7.56 -51.93 -0.39 0.70 16 26 H 0.33 4.52 8.33 -39.29 -0.33 4.19 16 27 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 28 H 0.04 0.63 8.10 -51.93 -0.42 0.21 16 29 H 0.06 1.33 5.97 -51.93 -0.31 1.02 16 30 H 0.03 0.48 8.14 -51.93 -0.42 0.06 16 31 H 0.05 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.09 2.37 6.04 -51.93 -0.31 2.05 16 33 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 34 H 0.25 7.17 8.31 -40.82 -0.34 6.83 16 35 H 0.05 1.05 7.40 -51.93 -0.38 0.67 16 36 H 0.02 0.57 8.14 -51.93 -0.42 0.14 16 LS Contribution 278.25 15.07 4.19 4.19 Total: -1.00 -28.82 278.25 -7.70 -36.52 By element: Atomic # 1 Polarization: 6.49 SS G_CDS: -6.23 Total: 0.26 kcal Atomic # 6 Polarization: -5.20 SS G_CDS: -0.16 Total: -5.36 kcal Atomic # 7 Polarization: -52.04 SS G_CDS: -0.47 Total: -52.51 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.03 Total: 16.90 kcal Total LS contribution 4.19 Total: 4.19 kcal Total: -28.82 -7.70 -36.52 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000108019904.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.674 kcal (2) G-P(sol) polarization free energy of solvation -28.816 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.858 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.703 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.519 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.26 seconds