Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46896 * 110.99987 * 2 1 4 4 C 1.52998 * 109.47383 * 71.99923 * 3 2 1 5 5 C 1.50705 * 109.47084 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00241 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99946 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99669 * 0.02562 * 7 5 4 9 9 Si 1.86790 * 120.00055 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47237 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47255 * 120.00182 * 9 7 5 12 12 H 1.48506 * 109.47171 * 239.99970 * 9 7 5 13 13 C 1.46901 * 110.99768 * 236.04351 * 2 1 3 14 14 H 1.09004 * 109.46874 * 174.40337 * 13 2 1 15 15 C 1.52993 * 109.47282 * 294.40412 * 13 2 1 16 16 N 1.46899 * 109.47134 * 303.05723 * 15 13 2 17 17 C 1.53007 * 109.47015 * 54.40325 * 13 2 1 18 18 C 1.53000 * 117.49496 * 176.12406 * 17 13 2 19 19 C 1.53002 * 60.02791 * 107.47763 * 18 17 13 20 20 H 1.08995 * 109.47111 * 183.58510 * 1 2 3 21 21 H 1.09006 * 109.47031 * 303.57778 * 1 2 3 22 22 H 1.08995 * 109.47118 * 63.57957 * 1 2 3 23 23 H 1.09000 * 109.47017 * 192.00212 * 3 2 1 24 24 H 1.08994 * 109.47170 * 311.99493 * 3 2 1 25 25 H 1.08997 * 109.46928 * 299.99752 * 4 3 2 26 26 H 1.09000 * 109.46919 * 59.99780 * 4 3 2 27 27 H 0.96999 * 119.99577 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47433 * 63.05289 * 15 13 2 29 29 H 1.09005 * 109.47361 * 183.05726 * 15 13 2 30 30 H 1.00900 * 111.00063 * 63.16893 * 16 15 13 31 31 H 1.00908 * 110.99857 * 187.12152 * 16 15 13 32 32 H 1.08996 * 115.54466 * 30.45805 * 17 13 2 33 33 H 1.08997 * 117.49469 * 214.97645 * 18 17 13 34 34 H 1.08991 * 117.50374 * 359.97438 * 18 17 13 35 35 H 1.09004 * 117.49898 * 107.49564 * 19 18 17 36 36 H 1.08995 * 117.49991 * 252.51716 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7621 2.0073 1.3718 5 6 2.3016 3.4145 1.3716 6 1 2.7650 3.8150 0.4821 7 6 2.2046 4.1902 2.5073 8 7 1.6416 3.7019 3.5910 9 14 2.8739 5.9341 2.5072 10 1 3.4553 6.2411 1.1757 11 1 1.7729 6.8870 2.7988 12 1 3.9263 6.0604 3.5474 13 6 1.9954 -0.7660 -1.1376 14 1 3.0805 -0.6676 -1.1709 15 6 1.6218 -2.2408 -0.9760 16 7 2.1367 -2.7387 0.3066 17 6 1.3942 -0.2271 -2.4373 18 6 1.8891 -0.8366 -3.7505 19 6 0.4854 -1.1637 -3.2371 20 1 -0.3633 -1.0256 0.0643 21 1 -0.3633 0.5684 0.8562 22 1 -0.3633 0.4572 -0.9203 23 1 3.0641 1.3503 -0.2137 24 1 1.4838 1.9570 -0.7637 25 1 0.6935 2.0284 1.5855 26 1 2.2738 1.4217 2.1356 27 1 1.5730 4.2478 4.3899 28 1 0.5370 -2.3453 -0.9970 29 1 2.0583 -2.8177 -1.7913 30 1 1.7079 -2.2544 1.0809 31 1 2.0053 -3.7360 0.3864 32 1 1.1481 0.8347 -2.4364 33 1 1.9679 -0.1759 -4.6137 34 1 2.6431 -1.6212 -3.6886 35 1 -0.3593 -0.7181 -3.7626 36 1 0.3160 -2.1633 -2.8371 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126747686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = 24.394559 kcal Electronic energy + Delta-G solvation = -14590.037065 eV Core-core repulsion = 12302.781967 eV Total energy + Delta-G solvation = -2287.255098 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.22532 -35.64906 -33.86804 -32.71497 -29.62147 -27.57564 -25.76780 -23.71643 -22.62594 -22.22013 -20.29473 -18.55234 -16.59910 -16.12334 -15.64602 -15.24801 -14.42601 -14.37133 -13.86155 -13.53571 -12.93886 -12.48088 -12.30473 -11.90231 -11.55587 -11.48133 -11.22539 -11.07538 -10.95232 -10.84293 -10.49236 -10.32636 -9.82854 -9.73656 -9.33580 -9.05683 -8.40350 -8.29184 -7.60794 -5.95910 -3.97766 3.33425 3.40763 3.44870 3.82217 4.41963 4.56649 4.69666 4.87948 5.01943 5.10448 5.31400 5.40073 5.42688 5.61029 5.70117 5.73683 5.87667 5.92110 6.00823 6.09785 6.11565 6.33319 6.36591 6.51417 6.58721 7.05690 7.37954 7.56841 7.64388 7.75220 7.85606 7.97628 8.14561 8.48774 9.10115 9.65640 11.15566 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042161 B = 0.006757 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.962853 B = 4143.024055 C = 4479.917483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.526 5.526 3 C 0.065 3.935 4 C 0.030 3.970 5 C -0.520 4.520 6 H 0.053 0.947 7 C 0.058 3.942 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.273 1.273 11 H -0.285 1.285 12 H -0.284 1.284 13 C 0.115 3.885 14 H 0.088 0.912 15 C 0.073 3.927 16 N -0.844 5.844 17 C -0.178 4.178 18 C -0.178 4.178 19 C -0.185 4.185 20 H 0.051 0.949 21 H 0.073 0.927 22 H 0.022 0.978 23 H 0.059 0.941 24 H 0.019 0.981 25 H 0.015 0.985 26 H 0.025 0.975 27 H 0.259 0.741 28 H 0.026 0.974 29 H 0.064 0.936 30 H 0.356 0.644 31 H 0.330 0.670 32 H 0.106 0.894 33 H 0.089 0.911 34 H 0.093 0.907 35 H 0.087 0.913 36 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.308 -10.900 -10.896 15.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 N -0.249 5.249 3 C -0.062 4.062 4 C -0.008 4.008 5 C -0.559 4.559 6 H 0.072 0.928 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.198 1.198 11 H -0.211 1.211 12 H -0.210 1.210 13 C 0.005 3.995 14 H 0.106 0.894 15 C -0.058 4.058 16 N -0.374 5.374 17 C -0.198 4.198 18 C -0.215 4.215 19 C -0.222 4.222 20 H 0.069 0.931 21 H 0.092 0.908 22 H 0.041 0.959 23 H 0.077 0.923 24 H 0.038 0.962 25 H 0.033 0.967 26 H 0.043 0.957 27 H 0.069 0.931 28 H 0.044 0.956 29 H 0.083 0.917 30 H 0.170 0.830 31 H 0.141 0.859 32 H 0.124 0.876 33 H 0.108 0.892 34 H 0.111 0.889 35 H 0.106 0.894 36 H 0.115 0.885 Dipole moment (debyes) X Y Z Total from point charges -1.484 -10.810 -10.514 15.153 hybrid contribution -0.996 1.197 -0.581 1.662 sum -2.480 -9.613 -11.096 14.889 Atomic orbital electron populations 1.22382 0.88704 1.00465 1.00897 1.62267 1.07029 1.16089 1.39473 1.22326 0.98163 0.85191 1.00513 1.19064 0.97062 0.94220 0.90409 1.21256 1.38369 0.98455 0.97816 0.92834 1.24990 0.95445 0.98296 0.95612 1.69989 1.44344 1.36674 1.02287 0.86561 0.78704 0.84870 0.78002 1.19812 1.21092 1.20983 1.21352 0.99556 0.92402 0.86207 0.89418 1.21864 0.96488 0.95071 0.92378 1.58518 1.66413 1.07892 1.04610 1.23189 1.03930 0.99245 0.93469 1.22893 0.97355 1.03655 0.97618 1.23070 0.93800 1.00948 1.04384 0.93065 0.90785 0.95920 0.92278 0.96225 0.96682 0.95695 0.93121 0.95562 0.91738 0.82950 0.85936 0.87612 0.89223 0.88879 0.89429 0.88531 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.40 8.78 60.07 0.53 0.92 16 2 N -0.53 -9.44 3.96 -234.89 -0.93 -10.37 16 3 C 0.06 1.39 4.46 -3.83 -0.02 1.37 16 4 C 0.03 0.79 5.02 -27.88 -0.14 0.65 16 5 C -0.52 -14.95 9.11 -34.44 -0.31 -15.27 16 6 H 0.05 1.50 7.74 -52.49 -0.41 1.09 16 7 C 0.06 1.68 5.46 -17.82 -0.10 1.58 16 8 N -0.89 -27.20 13.29 55.43 0.74 -26.46 16 9 Si 0.89 21.93 29.54 -169.99 -5.02 16.91 16 10 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 11 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 12 H -0.28 -6.91 7.11 56.52 0.40 -6.51 16 13 C 0.11 1.73 2.36 -67.71 -0.16 1.57 16 14 H 0.09 1.46 7.87 -51.93 -0.41 1.05 16 15 C 0.07 0.94 4.58 -3.83 -0.02 0.92 16 16 N -0.84 -11.25 9.56 -10.37 -0.10 -11.35 16 17 C -0.18 -2.43 4.08 -90.58 -0.37 -2.80 16 18 C -0.18 -2.01 9.96 -26.73 -0.27 -2.28 16 19 C -0.19 -2.09 9.51 -26.70 -0.25 -2.34 16 20 H 0.05 0.74 6.50 -51.93 -0.34 0.40 16 21 H 0.07 1.38 6.58 -51.93 -0.34 1.03 16 22 H 0.02 0.36 6.76 -51.93 -0.35 0.01 16 23 H 0.06 1.28 7.82 -51.93 -0.41 0.87 16 24 H 0.02 0.42 7.00 -51.93 -0.36 0.05 16 25 H 0.01 0.41 6.70 -51.93 -0.35 0.07 16 26 H 0.02 0.71 8.14 -51.93 -0.42 0.29 16 27 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 28 H 0.03 0.33 5.50 -51.93 -0.29 0.04 16 29 H 0.06 0.75 7.40 -51.93 -0.38 0.37 16 30 H 0.36 5.20 8.41 -39.29 -0.33 4.87 16 31 H 0.33 3.52 9.08 -39.29 -0.36 3.16 16 32 H 0.11 1.64 6.57 -51.93 -0.34 1.29 16 33 H 0.09 0.95 8.14 -51.93 -0.42 0.53 16 34 H 0.09 0.99 7.88 -51.93 -0.41 0.58 16 35 H 0.09 0.94 8.14 -51.93 -0.42 0.52 16 36 H 0.10 1.02 5.81 -51.93 -0.30 0.72 16 LS Contribution 281.33 15.07 4.24 4.24 Total: -1.00 -29.93 281.33 -7.96 -37.89 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -5.77 Total: 4.82 kcal Atomic # 6 Polarization: -14.56 SS G_CDS: -1.11 Total: -15.67 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.29 Total: -48.18 kcal Atomic # 14 Polarization: 21.93 SS G_CDS: -5.02 Total: 16.91 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.93 -7.96 -37.89 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126747686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.280 kcal (2) G-P(sol) polarization free energy of solvation -29.930 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.350 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.956 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.886 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.395 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds