Wall clock time and date at job start Mon Mar 30 2020 02:40:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46903 * 1 3 3 C 1.46896 * 110.99987 * 2 1 4 4 C 1.52998 * 109.47383 * 71.99923 * 3 2 1 5 5 C 1.50705 * 109.47084 * 180.02562 * 4 3 2 6 6 H 1.07998 * 120.00241 * 359.97438 * 5 4 3 7 7 C 1.37878 * 119.99946 * 180.02562 * 5 4 3 8 8 N 1.31522 * 119.99669 * 0.02562 * 7 5 4 9 9 Si 1.86790 * 120.00055 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47237 * 359.97438 * 9 7 5 11 11 H 1.48506 * 109.47255 * 120.00182 * 9 7 5 12 12 H 1.48506 * 109.47171 * 239.99970 * 9 7 5 13 13 C 1.46901 * 110.99768 * 236.04351 * 2 1 3 14 14 H 1.09004 * 109.46874 * 174.40337 * 13 2 1 15 15 C 1.52993 * 109.47282 * 294.40412 * 13 2 1 16 16 N 1.46899 * 109.47134 * 303.05723 * 15 13 2 17 17 C 1.53007 * 109.47015 * 54.40325 * 13 2 1 18 18 C 1.53000 * 117.49496 * 176.12406 * 17 13 2 19 19 C 1.53002 * 60.02791 * 107.47763 * 18 17 13 20 20 H 1.08995 * 109.47111 * 183.58510 * 1 2 3 21 21 H 1.09006 * 109.47031 * 303.57778 * 1 2 3 22 22 H 1.08995 * 109.47118 * 63.57957 * 1 2 3 23 23 H 1.09000 * 109.47017 * 192.00212 * 3 2 1 24 24 H 1.08994 * 109.47170 * 311.99493 * 3 2 1 25 25 H 1.08997 * 109.46928 * 299.99752 * 4 3 2 26 26 H 1.09000 * 109.46919 * 59.99780 * 4 3 2 27 27 H 0.96999 * 119.99577 * 180.02562 * 8 7 5 28 28 H 1.09004 * 109.47433 * 63.05289 * 15 13 2 29 29 H 1.09005 * 109.47361 * 183.05726 * 15 13 2 30 30 H 1.00900 * 111.00063 * 63.16893 * 16 15 13 31 31 H 1.00908 * 110.99857 * 187.12152 * 16 15 13 32 32 H 1.08996 * 115.54466 * 30.45805 * 17 13 2 33 33 H 1.08997 * 117.49469 * 214.97645 * 18 17 13 34 34 H 1.08991 * 117.50374 * 359.97438 * 18 17 13 35 35 H 1.09004 * 117.49898 * 107.49564 * 19 18 17 36 36 H 1.08995 * 117.49991 * 252.51716 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3714 0.0000 4 6 1.7621 2.0073 1.3718 5 6 2.3016 3.4145 1.3716 6 1 2.7650 3.8150 0.4821 7 6 2.2046 4.1902 2.5073 8 7 1.6416 3.7019 3.5910 9 14 2.8739 5.9341 2.5072 10 1 3.4553 6.2411 1.1757 11 1 1.7729 6.8870 2.7988 12 1 3.9263 6.0604 3.5474 13 6 1.9954 -0.7660 -1.1376 14 1 3.0805 -0.6676 -1.1709 15 6 1.6218 -2.2408 -0.9760 16 7 2.1367 -2.7387 0.3066 17 6 1.3942 -0.2271 -2.4373 18 6 1.8891 -0.8366 -3.7505 19 6 0.4854 -1.1637 -3.2371 20 1 -0.3633 -1.0256 0.0643 21 1 -0.3633 0.5684 0.8562 22 1 -0.3633 0.4572 -0.9203 23 1 3.0641 1.3503 -0.2137 24 1 1.4838 1.9570 -0.7637 25 1 0.6935 2.0284 1.5855 26 1 2.2738 1.4217 2.1356 27 1 1.5730 4.2478 4.3899 28 1 0.5370 -2.3453 -0.9970 29 1 2.0583 -2.8177 -1.7913 30 1 1.7079 -2.2544 1.0809 31 1 2.0053 -3.7360 0.3864 32 1 1.1481 0.8347 -2.4364 33 1 1.9679 -0.1759 -4.6137 34 1 2.6431 -1.6212 -3.6886 35 1 -0.3593 -0.7181 -3.7626 36 1 0.3160 -2.1633 -2.8371 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000126747686.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:19 Heat of formation + Delta-G solvation = 3.132848 kcal Electronic energy + Delta-G solvation = -14590.959042 eV Core-core repulsion = 12302.781967 eV Total energy + Delta-G solvation = -2288.177075 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.22 seconds Orbital eigenvalues (eV) -40.42131 -37.00298 -35.30778 -34.51178 -31.52424 -28.83087 -27.48727 -25.35249 -23.85602 -23.13638 -22.09378 -19.79530 -18.59487 -17.35146 -16.81845 -16.66807 -16.27462 -15.84732 -15.23640 -14.71808 -14.28075 -14.21704 -13.94537 -13.21290 -13.14443 -12.89873 -12.81950 -12.59214 -12.36269 -12.27877 -12.09411 -11.81063 -11.36311 -11.30841 -11.08689 -10.82716 -10.53371 -9.46353 -9.02840 -8.19613 -6.30656 1.39394 1.40238 1.53364 2.40335 2.84313 3.13611 3.17763 3.65424 3.85254 4.03218 4.13521 4.22651 4.30771 4.37585 4.49770 4.59997 4.72294 4.78068 4.81114 4.87559 4.98195 5.03055 5.09973 5.14043 5.25520 5.25940 5.47410 5.69947 5.80648 6.13760 6.30122 6.37279 6.44233 6.76226 6.86956 7.38247 8.92752 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042161 B = 0.006757 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.962853 B = 4143.024055 C = 4479.917483 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.535 5.535 3 C 0.085 3.915 4 C 0.040 3.960 5 C -0.545 4.545 6 H 0.057 0.943 7 C 0.002 3.998 8 N -0.931 5.931 9 Si 0.965 3.035 10 H -0.263 1.263 11 H -0.277 1.277 12 H -0.277 1.277 13 C 0.117 3.883 14 H 0.069 0.931 15 C 0.080 3.920 16 N -0.856 5.856 17 C -0.202 4.202 18 C -0.165 4.165 19 C -0.169 4.169 20 H 0.077 0.923 21 H 0.046 0.954 22 H 0.029 0.971 23 H 0.053 0.947 24 H 0.018 0.982 25 H -0.007 1.007 26 H -0.008 1.008 27 H 0.264 0.736 28 H 0.037 0.963 29 H 0.084 0.916 30 H 0.347 0.653 31 H 0.346 0.654 32 H 0.083 0.917 33 H 0.097 0.903 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.110 0.890 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.246 -11.396 -12.482 17.050 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 N -0.257 5.257 3 C -0.043 4.043 4 C 0.003 3.997 5 C -0.583 4.583 6 H 0.075 0.925 7 C -0.196 4.196 8 N -0.571 5.571 9 Si 0.790 3.210 10 H -0.187 1.187 11 H -0.202 1.202 12 H -0.203 1.203 13 C 0.008 3.992 14 H 0.087 0.913 15 C -0.051 4.051 16 N -0.387 5.387 17 C -0.222 4.222 18 C -0.202 4.202 19 C -0.205 4.205 20 H 0.096 0.904 21 H 0.065 0.935 22 H 0.047 0.953 23 H 0.071 0.929 24 H 0.037 0.963 25 H 0.011 0.989 26 H 0.010 0.990 27 H 0.072 0.928 28 H 0.055 0.945 29 H 0.102 0.898 30 H 0.160 0.840 31 H 0.159 0.841 32 H 0.101 0.899 33 H 0.116 0.884 34 H 0.122 0.878 35 H 0.114 0.886 36 H 0.128 0.872 Dipole moment (debyes) X Y Z Total from point charges -1.422 -11.335 -12.124 16.659 hybrid contribution -1.021 1.289 -0.089 1.647 sum -2.443 -10.046 -12.213 16.002 Atomic orbital electron populations 1.22311 0.87807 1.01672 0.99915 1.62143 1.07862 1.13939 1.41779 1.21891 0.97944 0.87204 0.97253 1.18873 0.94933 0.93614 0.92312 1.21672 1.38721 0.99695 0.98230 0.92490 1.25952 0.95514 1.03102 0.95060 1.70120 1.45341 1.38620 1.03042 0.85397 0.78176 0.78957 0.78485 1.18719 1.20221 1.20262 1.21337 0.98417 0.93540 0.85921 0.91324 1.21841 0.97185 0.93324 0.92755 1.58502 1.66599 1.09097 1.04480 1.22946 1.06826 0.98498 0.93935 1.22984 0.97771 1.03377 0.96105 1.23156 0.93933 1.00672 1.02782 0.90416 0.93546 0.95285 0.92869 0.96331 0.98865 0.99004 0.92764 0.94532 0.89756 0.83982 0.84134 0.89893 0.88417 0.87804 0.88643 0.87225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 1.03 8.78 127.69 1.12 2.15 16 2 N -0.53 -19.38 3.96 -897.06 -3.55 -22.93 16 3 C 0.08 3.74 4.46 86.30 0.38 4.12 16 4 C 0.04 2.21 5.02 29.85 0.15 2.36 16 5 C -0.54 -32.03 9.11 25.60 0.23 -31.79 16 6 H 0.06 3.23 7.74 -2.91 -0.02 3.21 16 7 C 0.00 0.09 5.46 84.65 0.46 0.56 16 8 N -0.93 -57.88 13.29 21.45 0.28 -57.59 16 9 Si 0.97 45.18 29.54 68.60 2.03 47.21 16 10 H -0.26 -11.78 7.11 99.48 0.71 -11.07 16 11 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 12 H -0.28 -12.61 7.11 99.48 0.71 -11.90 16 13 C 0.12 3.43 2.36 44.92 0.11 3.54 16 14 H 0.07 2.26 7.87 -2.38 -0.02 2.24 16 15 C 0.08 1.86 4.58 86.30 0.40 2.26 16 16 N -0.86 -21.50 9.56 -186.72 -1.78 -23.28 16 17 C -0.20 -5.21 4.08 -10.77 -0.04 -5.26 16 18 C -0.16 -3.29 9.96 30.59 0.30 -2.98 16 19 C -0.17 -3.29 9.51 30.62 0.29 -3.00 16 20 H 0.08 2.14 6.50 -2.39 -0.02 2.12 16 21 H 0.05 1.78 6.58 -2.38 -0.02 1.76 16 22 H 0.03 0.92 6.76 -2.39 -0.02 0.90 16 23 H 0.05 2.37 7.82 -2.39 -0.02 2.36 16 24 H 0.02 0.81 7.00 -2.39 -0.02 0.80 16 25 H -0.01 -0.41 6.70 -2.39 -0.02 -0.43 16 26 H -0.01 -0.52 8.14 -2.39 -0.02 -0.54 16 27 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 28 H 0.04 0.79 5.50 -2.38 -0.01 0.78 16 29 H 0.08 1.67 7.40 -2.38 -0.02 1.65 16 30 H 0.35 9.89 8.41 -89.69 -0.75 9.14 16 31 H 0.35 6.67 9.08 -89.69 -0.81 5.85 16 32 H 0.08 2.54 6.57 -2.39 -0.02 2.52 16 33 H 0.10 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.10 1.87 7.88 -2.39 -0.02 1.85 16 35 H 0.10 1.75 8.14 -2.38 -0.02 1.73 16 36 H 0.11 1.87 5.81 -2.39 -0.01 1.86 16 Total: -1.00 -65.20 281.33 -0.11 -65.31 By element: Atomic # 1 Polarization: 19.82 SS G_CDS: -0.50 Total: 19.33 kcal Atomic # 6 Polarization: -31.45 SS G_CDS: 3.40 Total: -28.05 kcal Atomic # 7 Polarization: -98.75 SS G_CDS: -5.05 Total: -103.80 kcal Atomic # 14 Polarization: 45.18 SS G_CDS: 2.03 Total: 47.21 kcal Total: -65.20 -0.11 -65.31 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126747686.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.443 kcal (2) G-P(sol) polarization free energy of solvation -65.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.113 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.310 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.133 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.22 seconds