Wall clock time and date at job start Mon Mar 30 2020 02:40:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46902 * 1 3 3 C 1.46908 * 111.00063 * 2 1 4 4 C 1.52999 * 109.47140 * 287.40217 * 3 2 1 5 5 C 1.50694 * 109.47145 * 180.02562 * 4 3 2 6 6 H 1.08003 * 119.99715 * 359.97438 * 5 4 3 7 7 C 1.37868 * 120.00313 * 179.97438 * 5 4 3 8 8 N 1.31520 * 120.00065 * 359.97438 * 7 5 4 9 9 Si 1.86810 * 120.00327 * 179.97438 * 7 5 4 10 10 H 1.48499 * 109.46879 * 59.99992 * 9 7 5 11 11 H 1.48499 * 109.47081 * 180.02562 * 9 7 5 12 12 H 1.48495 * 109.46933 * 300.00141 * 9 7 5 13 13 C 1.46899 * 111.00031 * 123.95580 * 2 1 3 14 14 H 1.09006 * 109.47330 * 186.37492 * 13 2 1 15 15 C 1.53003 * 109.47075 * 66.37494 * 13 2 1 16 16 N 1.46895 * 109.47273 * 57.04524 * 15 13 2 17 17 C 1.52997 * 109.47472 * 306.37136 * 13 2 1 18 18 C 1.52992 * 117.51808 * 116.04297 * 17 13 2 19 19 C 1.52991 * 117.50449 * 184.67395 * 17 13 2 20 20 H 1.09000 * 109.46769 * 296.38303 * 1 2 3 21 21 H 1.08999 * 109.47158 * 56.38293 * 1 2 3 22 22 H 1.08997 * 109.46617 * 176.38261 * 1 2 3 23 23 H 1.09001 * 109.46617 * 47.40371 * 3 2 1 24 24 H 1.09000 * 109.46836 * 167.39613 * 3 2 1 25 25 H 1.09006 * 109.46620 * 299.99640 * 4 3 2 26 26 H 1.08991 * 109.47142 * 59.99449 * 4 3 2 27 27 H 0.97000 * 119.99962 * 180.02562 * 8 7 5 28 28 H 1.08999 * 109.46692 * 177.04808 * 15 13 2 29 29 H 1.08996 * 109.46679 * 297.04384 * 15 13 2 30 30 H 1.00894 * 111.00302 * 183.84692 * 16 15 13 31 31 H 1.00897 * 111.00354 * 307.80337 * 16 15 13 32 32 H 1.09010 * 115.54785 * 330.34839 * 17 13 2 33 33 H 1.09006 * 117.50139 * 214.97528 * 18 17 13 34 34 H 1.08999 * 117.49964 * 359.97438 * 18 17 13 35 35 H 1.09004 * 117.49799 * 359.97438 * 19 17 13 36 36 H 1.09002 * 117.49931 * 144.99498 * 19 17 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9955 1.3715 0.0000 4 6 1.7755 2.0022 -1.3765 5 6 2.3161 3.4089 -1.3767 6 1 2.7708 3.8127 -0.4841 7 6 2.2304 4.1802 -2.5161 8 7 1.6773 3.6883 -3.6032 9 14 2.9000 5.9242 -2.5162 10 1 4.3528 5.8966 -2.2101 11 1 2.6865 6.5363 -3.8522 12 1 2.1922 6.7261 -1.4860 13 6 1.9955 -0.7660 1.1375 14 1 3.0792 -0.6564 1.1791 15 6 1.6385 -2.2439 0.9661 16 7 2.1698 -2.7307 -0.3140 17 6 1.3797 -0.2398 2.4355 18 6 0.4900 -1.1948 3.2338 19 6 1.8850 -0.8372 3.7502 20 1 -0.3633 0.4567 0.9206 21 1 -0.3633 0.5689 -0.8558 22 1 -0.3632 -1.0256 -0.0648 23 1 1.4763 1.9599 0.7565 24 1 3.0620 1.3512 0.2242 25 1 2.2948 1.4137 -2.1329 26 1 0.7091 2.0224 -1.6006 27 1 1.6173 4.2308 -4.4050 28 1 2.0738 -2.8198 1.7828 29 1 0.5548 -2.3595 0.9773 30 1 1.8939 -3.6869 -0.4798 31 1 1.8821 -2.1342 -1.0752 32 1 1.1097 0.8163 2.4335 33 1 -0.3653 -0.7671 3.7570 34 1 0.3429 -2.1981 2.8341 35 1 2.6560 -1.6054 3.6905 36 1 1.9477 -0.1741 4.6131 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000126747881.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:40:21 Heat of formation + Delta-G solvation = 23.983866 kcal Electronic energy + Delta-G solvation = -14591.271867 eV Core-core repulsion = 12303.998960 eV Total energy + Delta-G solvation = -2287.272907 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.25067 -35.67554 -33.86352 -32.71955 -29.63168 -27.57516 -25.77901 -23.73146 -22.64196 -22.21835 -20.32443 -18.59483 -16.58718 -16.13882 -15.54169 -15.30282 -14.44391 -14.42269 -13.78014 -13.55010 -12.95894 -12.54804 -12.31032 -11.93521 -11.52811 -11.48209 -11.27420 -11.08225 -10.97612 -10.83576 -10.52551 -10.33859 -9.82670 -9.74664 -9.34221 -9.09549 -8.40677 -8.29619 -7.65805 -5.96450 -3.98667 3.35318 3.39587 3.42025 3.81346 4.40379 4.55912 4.69042 4.87600 5.01882 5.10155 5.29750 5.39317 5.43586 5.60967 5.70657 5.72193 5.87836 5.91374 5.99726 6.08373 6.10598 6.31128 6.34738 6.49212 6.56357 7.03481 7.39198 7.53560 7.61156 7.77819 7.83196 7.95712 8.12917 8.47456 9.08691 9.64744 11.14898 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.042189 B = 0.006753 C = 0.006249 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 663.516310 B = 4145.524623 C = 4479.994527 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.024 3.976 2 N -0.529 5.529 3 C 0.065 3.935 4 C 0.031 3.969 5 C -0.522 4.522 6 H 0.052 0.948 7 C 0.059 3.941 8 N -0.894 5.894 9 Si 0.891 3.109 10 H -0.277 1.277 11 H -0.287 1.287 12 H -0.278 1.278 13 C 0.112 3.888 14 H 0.088 0.912 15 C 0.074 3.926 16 N -0.847 5.847 17 C -0.177 4.177 18 C -0.185 4.185 19 C -0.177 4.177 20 H 0.023 0.977 21 H 0.074 0.926 22 H 0.051 0.949 23 H 0.020 0.980 24 H 0.059 0.941 25 H 0.024 0.976 26 H 0.015 0.985 27 H 0.260 0.740 28 H 0.064 0.936 29 H 0.026 0.974 30 H 0.330 0.670 31 H 0.359 0.641 32 H 0.106 0.894 33 H 0.087 0.913 34 H 0.097 0.903 35 H 0.093 0.907 36 H 0.089 0.911 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.387 -10.590 10.773 15.294 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.125 4.125 2 N -0.252 5.252 3 C -0.062 4.062 4 C -0.007 4.007 5 C -0.561 4.561 6 H 0.071 0.929 7 C -0.143 4.143 8 N -0.533 5.533 9 Si 0.719 3.281 10 H -0.202 1.202 11 H -0.213 1.213 12 H -0.204 1.204 13 C 0.002 3.998 14 H 0.106 0.894 15 C -0.058 4.058 16 N -0.378 5.378 17 C -0.198 4.198 18 C -0.222 4.222 19 C -0.215 4.215 20 H 0.042 0.958 21 H 0.092 0.908 22 H 0.070 0.930 23 H 0.039 0.961 24 H 0.078 0.922 25 H 0.043 0.957 26 H 0.033 0.967 27 H 0.070 0.930 28 H 0.083 0.917 29 H 0.044 0.956 30 H 0.141 0.859 31 H 0.174 0.826 32 H 0.124 0.876 33 H 0.106 0.894 34 H 0.115 0.885 35 H 0.112 0.888 36 H 0.108 0.892 Dipole moment (debyes) X Y Z Total from point charges -1.556 -10.628 10.447 14.984 hybrid contribution -1.006 1.366 0.520 1.775 sum -2.562 -9.262 10.967 14.581 Atomic orbital electron populations 1.22385 0.88584 1.00544 1.00944 1.62255 1.07185 1.16249 1.39464 1.22337 0.98145 0.85094 1.00617 1.19050 0.97084 0.94243 0.90295 1.21172 1.38906 0.98565 0.97461 0.92933 1.24981 0.95410 0.98262 0.95602 1.69965 1.44428 1.36923 1.01970 0.86674 0.79550 0.84826 0.77031 1.20221 1.21281 1.20366 1.21370 0.99554 0.92483 0.86388 0.89361 1.21865 0.96373 0.94829 0.92696 1.58629 1.67489 1.06421 1.05303 1.23146 1.03996 0.99215 0.93421 1.23062 0.94023 1.00736 1.04350 1.22896 0.97345 1.03714 0.97539 0.95831 0.90763 0.93010 0.96140 0.92246 0.95720 0.96681 0.92988 0.91749 0.95607 0.85919 0.82574 0.87621 0.89422 0.88482 0.88834 0.89206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.39 8.78 60.07 0.53 0.92 16 2 N -0.53 -9.40 3.74 -234.88 -0.88 -10.27 16 3 C 0.06 1.37 4.47 -3.82 -0.02 1.36 16 4 C 0.03 0.80 5.03 -27.89 -0.14 0.66 16 5 C -0.52 -14.95 9.11 -34.45 -0.31 -15.27 16 6 H 0.05 1.46 7.74 -52.48 -0.41 1.05 16 7 C 0.06 1.70 5.46 -17.82 -0.10 1.61 16 8 N -0.89 -27.11 13.29 55.43 0.74 -26.37 16 9 Si 0.89 21.87 29.54 -169.99 -5.02 16.85 16 10 H -0.28 -6.68 7.11 56.52 0.40 -6.27 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 13 C 0.11 1.68 2.35 -67.71 -0.16 1.52 16 14 H 0.09 1.46 7.85 -51.93 -0.41 1.05 16 15 C 0.07 0.95 4.64 -3.83 -0.02 0.94 16 16 N -0.85 -11.44 9.65 -10.37 -0.10 -11.54 16 17 C -0.18 -2.41 4.09 -90.63 -0.37 -2.78 16 18 C -0.18 -2.08 9.50 -26.74 -0.25 -2.33 16 19 C -0.18 -2.01 9.97 -26.74 -0.27 -2.27 16 20 H 0.02 0.37 6.69 -51.93 -0.35 0.03 16 21 H 0.07 1.37 6.61 -51.93 -0.34 1.03 16 22 H 0.05 0.75 6.53 -51.93 -0.34 0.41 16 23 H 0.02 0.43 7.05 -51.93 -0.37 0.07 16 24 H 0.06 1.28 7.79 -51.93 -0.40 0.87 16 25 H 0.02 0.70 8.14 -51.93 -0.42 0.27 16 26 H 0.01 0.41 6.73 -51.93 -0.35 0.06 16 27 H 0.26 7.47 8.31 -40.82 -0.34 7.13 16 28 H 0.06 0.77 7.41 -51.93 -0.38 0.38 16 29 H 0.03 0.32 5.56 -51.93 -0.29 0.04 16 30 H 0.33 3.62 9.08 -39.30 -0.36 3.27 16 31 H 0.36 5.41 8.10 -39.29 -0.32 5.10 16 32 H 0.11 1.62 6.56 -51.92 -0.34 1.28 16 33 H 0.09 0.93 8.14 -51.93 -0.42 0.51 16 34 H 0.10 1.03 5.81 -51.93 -0.30 0.72 16 35 H 0.09 1.00 7.93 -51.93 -0.41 0.59 16 36 H 0.09 0.95 8.14 -51.93 -0.42 0.52 16 LS Contribution 281.11 15.07 4.24 4.24 Total: -1.00 -29.60 281.11 -7.91 -37.51 By element: Atomic # 1 Polarization: 11.02 SS G_CDS: -5.77 Total: 5.25 kcal Atomic # 6 Polarization: -14.54 SS G_CDS: -1.11 Total: -15.65 kcal Atomic # 7 Polarization: -47.95 SS G_CDS: -0.24 Total: -48.19 kcal Atomic # 14 Polarization: 21.87 SS G_CDS: -5.02 Total: 16.85 kcal Total LS contribution 4.24 Total: 4.24 kcal Total: -29.60 -7.91 -37.51 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000126747881.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.491 kcal (2) G-P(sol) polarization free energy of solvation -29.601 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 31.889 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.905 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.507 kcal (6) G-S(sol) free energy of system = (1) + (5) 23.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds