Wall clock time and date at job start Mon Mar 30 2020 02:45:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 119.99916 * 2 1 4 4 H 1.48508 * 109.46988 * 239.99179 * 3 2 1 5 5 H 1.48496 * 109.47508 * 359.97438 * 3 2 1 6 6 H 1.48498 * 109.47302 * 119.99682 * 3 2 1 7 7 C 1.37879 * 119.99790 * 179.97438 * 2 1 3 8 8 H 1.08001 * 120.00092 * 180.02562 * 7 2 1 9 9 S 1.76194 * 120.00141 * 0.02562 * 7 2 1 10 10 O 1.42108 * 106.40551 * 66.45459 * 9 7 2 11 11 O 1.42098 * 106.40271 * 293.53166 * 9 7 2 12 12 C 1.76201 * 107.22062 * 179.97438 * 9 7 2 13 13 C 1.38678 * 120.41768 * 270.25441 * 12 9 7 14 14 C 1.38627 * 118.41930 * 180.23930 * 13 12 9 15 15 C 1.38232 * 119.16085 * 359.75178 * 14 13 12 16 16 N 1.31857 * 120.76541 * 359.97438 * 15 14 13 17 17 C 1.31889 * 121.72235 * 0.02562 * 16 15 14 18 18 H 0.96993 * 119.99634 * 0.02562 * 1 2 3 19 19 H 1.07994 * 120.78944 * 359.96634 * 13 12 9 20 20 H 1.07997 * 120.42083 * 179.72800 * 14 13 12 21 21 H 1.07999 * 119.61954 * 180.02562 * 15 14 13 22 22 H 1.08002 * 119.61237 * 179.97438 * 17 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.1031 1.6963 -1.2125 5 1 1.2843 2.7465 -0.0006 6 1 3.1029 1.6965 1.2125 7 6 2.0046 -1.1941 0.0005 8 1 3.0846 -1.1941 0.0010 9 16 1.1236 -2.7200 0.0005 10 8 0.4518 -2.7955 -1.2494 11 8 0.4511 -2.7951 1.2501 12 6 2.3203 -4.0132 0.0005 13 6 2.8010 -4.5250 -1.1954 14 6 3.7381 -5.5455 -1.1470 15 6 4.1629 -6.0121 0.0828 16 7 3.6879 -5.4978 1.2002 17 6 2.7958 -4.5264 1.1921 18 1 -0.4849 0.8400 -0.0004 19 1 2.4505 -4.1407 -2.1418 20 1 4.1309 -5.9708 -2.0587 21 1 4.8930 -6.8066 0.1291 22 1 2.4295 -4.1305 2.1278 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000145033355.mol2 22 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:45:47 Heat of formation + Delta-G solvation = -55.602009 kcal Electronic energy + Delta-G solvation = -11934.243984 eV Core-core repulsion = 9581.054900 eV Total energy + Delta-G solvation = -2353.189084 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.025 amu Computer time = 0.12 seconds Orbital eigenvalues (eV) -39.67592 -35.34486 -34.06863 -33.18122 -32.22533 -31.04137 -26.22749 -23.52218 -23.28655 -18.88892 -17.60747 -16.81223 -16.06592 -15.98848 -14.95490 -14.13250 -13.94657 -13.64751 -13.52736 -12.82746 -12.15625 -12.03101 -11.30691 -11.24135 -10.66690 -10.39032 -10.29417 -10.16817 -9.77749 -9.30589 -9.20550 -9.09511 -8.82203 -6.78814 -5.42808 1.04249 1.48417 2.02165 3.05697 3.10137 3.15806 3.89999 4.03131 4.56063 4.64744 4.97865 5.18119 5.26212 5.33045 5.57510 5.75249 5.84282 6.21547 6.24671 6.78819 6.87191 7.22826 7.85138 8.07082 8.78717 10.16139 Molecular weight = 213.02amu Principal moments of inertia in cm(-1) A = 0.045838 B = 0.011035 C = 0.010392 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 610.698466 B = 2536.812879 C = 2693.835161 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.841 5.841 2 C 0.133 3.867 3 Si 0.925 3.075 4 H -0.263 1.263 5 H -0.275 1.275 6 H -0.262 1.262 7 C -1.002 5.002 8 H 0.104 0.896 9 S 2.608 3.392 10 O -0.982 6.982 11 O -0.980 6.980 12 C -0.697 4.697 13 C 0.015 3.985 14 C -0.201 4.201 15 C 0.125 3.875 16 N -0.504 5.504 17 C 0.186 3.814 18 H 0.294 0.706 19 H 0.151 0.849 20 H 0.138 0.862 21 H 0.155 0.845 22 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.856 -5.497 -1.750 8.960 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.470 5.470 2 C -0.086 4.086 3 Si 0.749 3.251 4 H -0.188 1.188 5 H -0.200 1.200 6 H -0.187 1.187 7 C -1.135 5.135 8 H 0.122 0.878 9 S 2.787 3.213 10 O -0.979 6.979 11 O -0.977 6.977 12 C -0.779 4.779 13 C -0.011 4.011 14 C -0.222 4.222 15 C -0.031 4.031 16 N -0.214 5.214 17 C 0.029 3.971 18 H 0.104 0.896 19 H 0.168 0.832 20 H 0.155 0.845 21 H 0.173 0.827 22 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges 6.123 -5.967 -0.948 8.601 hybrid contribution 1.045 1.076 -0.885 1.742 sum 7.168 -4.891 -1.833 8.869 Atomic orbital electron populations 1.69885 1.06739 1.31101 1.39274 1.24772 0.94578 1.00792 0.88454 0.86121 0.79831 0.79261 0.79931 1.18769 1.19952 1.18692 1.30053 1.05855 1.09929 1.67700 0.87770 1.01072 0.72916 0.73793 0.73489 1.93344 1.72049 1.87637 1.44837 1.93349 1.71995 1.87615 1.44757 1.32678 1.22778 1.22883 0.99522 1.21443 0.90399 0.91328 0.97949 1.22190 1.00550 0.99803 0.99653 1.22951 0.95623 0.96364 0.88198 1.67793 1.11395 1.11038 1.31124 1.22666 0.88294 0.88788 0.97348 0.89592 0.83170 0.84451 0.82728 0.80986 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.84 -23.89 13.19 55.43 0.73 -23.16 14 2 C 0.13 3.57 5.46 -17.82 -0.10 3.48 14 3 Si 0.93 19.95 29.54 -169.99 -5.02 14.93 14 4 H -0.26 -5.48 7.11 56.52 0.40 -5.08 14 5 H -0.27 -5.65 7.11 56.52 0.40 -5.24 14 6 H -0.26 -5.49 7.11 56.52 0.40 -5.08 14 7 C -1.00 -26.69 9.58 30.60 0.29 -26.40 14 8 H 0.10 2.54 7.81 -52.49 -0.41 2.13 14 9 S 2.61 67.27 4.66 -107.50 -0.50 66.77 14 10 O -0.98 -27.42 17.25 -57.17 -0.99 -28.41 14 11 O -0.98 -27.49 17.19 -57.17 -0.98 -28.47 14 12 C -0.70 -14.57 5.83 -39.44 -0.23 -14.80 14 13 C 0.02 0.27 9.65 -39.28 -0.38 -0.11 14 14 C -0.20 -2.91 10.11 -39.44 -0.40 -3.31 14 15 C 0.13 1.83 11.18 -17.54 -0.20 1.64 14 16 N -0.50 -8.97 10.36 -13.25 -0.14 -9.11 14 17 C 0.19 3.66 10.69 -17.55 -0.19 3.47 14 18 H 0.29 7.48 8.31 -40.82 -0.34 7.14 14 19 H 0.15 2.52 7.71 -52.49 -0.40 2.12 14 20 H 0.14 1.43 8.06 -52.49 -0.42 1.01 14 21 H 0.16 1.60 8.06 -52.49 -0.42 1.18 14 22 H 0.17 3.22 7.63 -52.49 -0.40 2.82 14 LS Contribution 223.60 15.07 3.37 3.37 Total: -1.00 -33.21 223.60 -5.92 -39.13 By element: Atomic # 1 Polarization: 2.18 SS G_CDS: -1.20 Total: 0.98 kcal Atomic # 6 Polarization: -34.84 SS G_CDS: -1.20 Total: -36.03 kcal Atomic # 7 Polarization: -32.87 SS G_CDS: 0.59 Total: -32.27 kcal Atomic # 8 Polarization: -54.91 SS G_CDS: -1.97 Total: -56.88 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Atomic # 16 Polarization: 67.27 SS G_CDS: -0.50 Total: 66.77 kcal Total LS contribution 3.37 Total: 3.37 kcal Total: -33.21 -5.92 -39.13 kcal The number of atoms in the molecule is 22 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000145033355.mol2 22 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -16.471 kcal (2) G-P(sol) polarization free energy of solvation -33.212 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.683 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.919 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.131 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.602 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.12 seconds