Wall clock time and date at job start Mon Mar 30 2020 02:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 110.99862 * 2 1 4 4 C 1.53003 * 109.46991 * 171.74297 * 3 2 1 5 5 H 1.09001 * 110.46004 * 303.86318 * 4 3 2 6 6 C 1.54382 * 110.41523 * 181.44981 * 4 3 2 7 7 C 1.54256 * 105.15292 * 217.42179 * 6 4 3 8 8 C 1.54387 * 105.06039 * 359.94544 * 7 6 4 9 9 N 1.48562 * 104.59079 * 23.85426 * 8 7 6 10 10 C 1.46899 * 110.99801 * 200.95760 * 9 8 7 11 11 C 1.53011 * 109.47179 * 76.75198 * 10 9 8 12 12 C 1.50693 * 109.47324 * 186.05720 * 11 10 9 13 13 H 1.08007 * 120.00029 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00048 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00386 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00004 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.47357 * 89.99765 * 16 14 12 18 18 H 1.48505 * 109.47422 * 210.00067 * 16 14 12 19 19 H 1.48507 * 109.47133 * 330.00042 * 16 14 12 20 20 H 1.09003 * 109.47605 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47328 * 300.00173 * 1 2 3 22 22 H 1.09001 * 109.47230 * 59.99988 * 1 2 3 23 23 H 1.00900 * 111.00189 * 236.04265 * 2 1 3 24 24 H 1.08998 * 109.47755 * 51.74591 * 3 2 1 25 25 H 1.09000 * 109.47385 * 291.73944 * 3 2 1 26 26 H 1.08994 * 110.32254 * 98.46718 * 6 4 3 27 27 H 1.09003 * 110.32002 * 336.36468 * 6 4 3 28 28 H 1.08998 * 110.32441 * 118.83810 * 7 6 4 29 29 H 1.08993 * 110.32120 * 241.05338 * 7 6 4 30 30 H 1.08999 * 110.41182 * 142.63144 * 8 7 6 31 31 H 1.08996 * 110.40968 * 265.07844 * 8 7 6 32 32 H 1.08996 * 109.47490 * 196.74942 * 10 9 8 33 33 H 1.09002 * 109.47456 * 316.75569 * 10 9 8 34 34 H 1.09003 * 109.46391 * 306.05842 * 11 10 9 35 35 H 1.09002 * 109.46520 * 66.05001 * 11 10 9 36 36 H 0.96994 * 120.00525 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5109 1.3359 0.2072 5 1 3.7576 0.8026 1.1252 6 6 4.0826 2.7694 0.2471 7 6 5.4407 2.6822 -0.4793 8 6 5.5779 1.2023 -0.8969 9 7 4.1813 0.6996 -0.9579 10 6 4.1440 -0.7651 -0.8518 11 6 4.3624 -1.1767 0.6057 12 6 4.4726 -2.6770 0.6929 13 1 4.3943 -3.2772 -0.2017 14 6 4.6725 -3.2837 1.9147 15 7 4.7682 -4.5932 1.9909 16 14 4.8073 -2.2458 3.4619 17 1 3.4576 -2.0614 4.0535 18 1 5.6881 -2.9305 4.4422 19 1 5.3832 -0.9203 3.1203 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8306 -0.5262 -0.7813 24 1 1.5316 1.9387 0.8069 25 1 1.7702 1.8471 -0.9546 26 1 4.2249 3.0917 1.2785 27 1 3.4174 3.4570 -0.2754 28 1 5.4414 3.3255 -1.3592 29 1 6.2496 2.9616 0.1957 30 1 6.0525 1.1258 -1.8752 31 1 6.1491 0.6485 -0.1519 32 1 3.1742 -1.1294 -1.1907 33 1 4.9305 -1.1946 -1.4723 34 1 5.2809 -0.7226 0.9775 35 1 3.5198 -0.8385 1.2088 36 1 4.9084 -5.0200 2.8506 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000169275723.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:22 Heat of formation + Delta-G solvation = 10.387918 kcal Electronic energy + Delta-G solvation = -15079.355430 eV Core-core repulsion = 12791.492958 eV Total energy + Delta-G solvation = -2287.862472 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.19182 -35.22135 -33.60382 -31.87452 -29.84306 -28.69499 -25.56433 -24.46025 -22.62714 -21.48017 -20.51528 -18.75697 -17.06990 -16.13438 -15.06926 -14.89548 -14.17283 -14.09365 -13.64270 -13.40144 -13.18023 -12.68723 -12.42767 -11.87480 -11.76357 -11.60798 -11.33966 -11.01765 -10.99544 -10.67889 -10.48068 -10.29234 -10.15696 -9.75962 -9.61662 -9.07001 -8.46020 -7.98160 -7.72008 -5.97611 -3.93798 3.36444 3.42516 3.45716 4.51095 4.51803 4.55194 5.02166 5.09162 5.25108 5.37186 5.49520 5.57646 5.70983 5.75251 5.85470 5.88973 5.91942 6.05432 6.10484 6.12144 6.22045 6.24223 6.32453 6.45223 6.60980 6.80473 7.21219 7.28303 7.40946 7.57125 7.63581 7.83873 7.93385 8.60394 9.07393 9.66108 11.16079 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.011398 C = 0.009573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.127407 B = 2455.937288 C = 2924.148692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 N -0.691 5.691 3 C 0.080 3.920 4 C 0.048 3.952 5 H 0.082 0.918 6 C -0.119 4.119 7 C -0.122 4.122 8 C 0.029 3.971 9 N -0.516 5.516 10 C 0.057 3.943 11 C -0.044 4.044 12 C -0.510 4.510 13 H 0.070 0.930 14 C 0.067 3.933 15 N -0.907 5.907 16 Si 0.880 3.120 17 H -0.276 1.276 18 H -0.291 1.291 19 H -0.269 1.269 20 H 0.066 0.934 21 H 0.058 0.942 22 H 0.013 0.987 23 H 0.352 0.648 24 H 0.066 0.934 25 H 0.030 0.970 26 H 0.063 0.937 27 H 0.065 0.935 28 H 0.065 0.935 29 H 0.062 0.938 30 H 0.074 0.926 31 H 0.051 0.949 32 H 0.069 0.931 33 H 0.062 0.938 34 H 0.007 0.993 35 H 0.040 0.960 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.396 14.259 -3.875 15.161 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 N -0.327 5.327 3 C -0.050 4.050 4 C -0.061 4.061 5 H 0.099 0.901 6 C -0.158 4.158 7 C -0.160 4.160 8 C -0.099 4.099 9 N -0.240 5.240 10 C -0.071 4.071 11 C -0.082 4.082 12 C -0.548 4.548 13 H 0.088 0.912 14 C -0.133 4.133 15 N -0.546 5.546 16 Si 0.708 3.292 17 H -0.202 1.202 18 H -0.217 1.217 19 H -0.194 1.194 20 H 0.084 0.916 21 H 0.076 0.924 22 H 0.031 0.969 23 H 0.176 0.824 24 H 0.084 0.916 25 H 0.048 0.952 26 H 0.082 0.918 27 H 0.084 0.916 28 H 0.084 0.916 29 H 0.081 0.919 30 H 0.092 0.908 31 H 0.069 0.931 32 H 0.087 0.913 33 H 0.080 0.920 34 H 0.026 0.974 35 H 0.058 0.942 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -3.595 14.154 -3.606 15.042 hybrid contribution 0.295 0.325 0.785 0.899 sum -3.300 14.480 -2.821 15.116 Atomic orbital electron populations 1.22151 0.88832 1.01642 0.99364 1.60570 1.06690 1.13781 1.51615 1.21839 0.93857 0.89988 0.99338 1.22944 0.93699 0.93978 0.95499 0.90067 1.22296 0.96672 0.96778 1.00073 1.22253 0.97026 0.96898 0.99833 1.23058 0.91623 0.94345 1.00877 1.65671 1.11001 1.08347 1.38977 1.22286 1.00930 0.84963 0.98902 1.20164 0.96562 0.97713 0.93755 1.21033 1.48886 0.89943 0.94962 0.91221 1.24987 0.94785 0.94681 0.98894 1.69915 1.50840 1.08691 1.25165 0.86779 0.78246 0.80793 0.83395 1.20189 1.21719 1.19424 0.91552 0.92358 0.96864 0.82408 0.91571 0.95162 0.91821 0.91621 0.91620 0.91891 0.90805 0.93110 0.91257 0.91992 0.97446 0.94201 0.92918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 10.68 60.06 0.64 1.06 16 2 N -0.69 -11.67 5.60 -121.13 -0.68 -12.35 16 3 C 0.08 1.22 5.29 -3.82 -0.02 1.20 16 4 C 0.05 0.79 2.25 -65.98 -0.15 0.64 16 5 H 0.08 1.60 5.22 -51.93 -0.27 1.33 16 6 C -0.12 -1.62 6.55 -25.35 -0.17 -1.78 16 7 C -0.12 -1.60 7.00 -25.35 -0.18 -1.78 16 8 C 0.03 0.46 6.29 -2.18 -0.01 0.45 16 9 N -0.52 -8.99 5.32 -221.99 -1.18 -10.17 16 10 C 0.06 1.15 4.75 -3.82 -0.02 1.14 16 11 C -0.04 -1.05 2.62 -27.88 -0.07 -1.12 16 12 C -0.51 -14.64 9.66 -34.45 -0.33 -14.97 16 13 H 0.07 2.14 7.99 -52.48 -0.42 1.72 16 14 C 0.07 1.99 5.47 -17.82 -0.10 1.89 16 15 N -0.91 -28.42 13.96 55.43 0.77 -27.65 16 16 Si 0.88 22.49 27.47 -169.99 -4.67 17.82 16 17 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 18 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 19 H -0.27 -6.65 6.54 56.52 0.37 -6.28 16 20 H 0.07 0.91 8.14 -51.93 -0.42 0.48 16 21 H 0.06 0.76 8.13 -51.93 -0.42 0.34 16 22 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 23 H 0.35 6.20 5.48 -39.29 -0.22 5.98 16 24 H 0.07 0.93 8.09 -51.93 -0.42 0.51 16 25 H 0.03 0.44 8.14 -51.93 -0.42 0.02 16 26 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 27 H 0.07 0.80 7.86 -51.93 -0.41 0.39 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 30 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 31 H 0.05 0.90 6.63 -51.93 -0.34 0.56 16 32 H 0.07 1.39 5.44 -51.93 -0.28 1.11 16 33 H 0.06 1.28 7.99 -51.93 -0.41 0.87 16 34 H 0.01 0.18 5.78 -51.93 -0.30 -0.12 16 35 H 0.04 0.98 5.03 -51.93 -0.26 0.72 16 36 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 LS Contribution 272.60 15.07 4.11 4.11 Total: -1.00 -30.68 272.60 -7.94 -38.62 By element: Atomic # 1 Polarization: 8.78 SS G_CDS: -5.89 Total: 2.90 kcal Atomic # 6 Polarization: -12.87 SS G_CDS: -0.41 Total: -13.28 kcal Atomic # 7 Polarization: -49.08 SS G_CDS: -1.09 Total: -50.17 kcal Atomic # 14 Polarization: 22.49 SS G_CDS: -4.67 Total: 17.82 kcal Total LS contribution 4.11 Total: 4.11 kcal Total: -30.68 -7.94 -38.62 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169275723.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.008 kcal (2) G-P(sol) polarization free energy of solvation -30.682 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.326 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.620 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.388 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds