Wall clock time and date at job start Mon Mar 30 2020 02:42:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46896 * 1 3 3 C 1.46896 * 110.99862 * 2 1 4 4 C 1.53003 * 109.46991 * 171.74297 * 3 2 1 5 5 H 1.09001 * 110.46004 * 303.86318 * 4 3 2 6 6 C 1.54382 * 110.41523 * 181.44981 * 4 3 2 7 7 C 1.54256 * 105.15292 * 217.42179 * 6 4 3 8 8 C 1.54387 * 105.06039 * 359.94544 * 7 6 4 9 9 N 1.48562 * 104.59079 * 23.85426 * 8 7 6 10 10 C 1.46899 * 110.99801 * 200.95760 * 9 8 7 11 11 C 1.53011 * 109.47179 * 76.75198 * 10 9 8 12 12 C 1.50693 * 109.47324 * 186.05720 * 11 10 9 13 13 H 1.08007 * 120.00029 * 359.97438 * 12 11 10 14 14 C 1.37873 * 120.00048 * 180.02562 * 12 11 10 15 15 N 1.31514 * 120.00386 * 179.97438 * 14 12 11 16 16 Si 1.86798 * 120.00004 * 359.97438 * 14 12 11 17 17 H 1.48507 * 109.47357 * 89.99765 * 16 14 12 18 18 H 1.48505 * 109.47422 * 210.00067 * 16 14 12 19 19 H 1.48507 * 109.47133 * 330.00042 * 16 14 12 20 20 H 1.09003 * 109.47605 * 180.02562 * 1 2 3 21 21 H 1.09004 * 109.47328 * 300.00173 * 1 2 3 22 22 H 1.09001 * 109.47230 * 59.99988 * 1 2 3 23 23 H 1.00900 * 111.00189 * 236.04265 * 2 1 3 24 24 H 1.08998 * 109.47755 * 51.74591 * 3 2 1 25 25 H 1.09000 * 109.47385 * 291.73944 * 3 2 1 26 26 H 1.08994 * 110.32254 * 98.46718 * 6 4 3 27 27 H 1.09003 * 110.32002 * 336.36468 * 6 4 3 28 28 H 1.08998 * 110.32441 * 118.83810 * 7 6 4 29 29 H 1.08993 * 110.32120 * 241.05338 * 7 6 4 30 30 H 1.08999 * 110.41182 * 142.63144 * 8 7 6 31 31 H 1.08996 * 110.40968 * 265.07844 * 8 7 6 32 32 H 1.08996 * 109.47490 * 196.74942 * 10 9 8 33 33 H 1.09002 * 109.47456 * 316.75569 * 10 9 8 34 34 H 1.09003 * 109.46391 * 306.05842 * 11 10 9 35 35 H 1.09002 * 109.46520 * 66.05001 * 11 10 9 36 36 H 0.96994 * 120.00525 * 180.02562 * 15 14 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 3.5109 1.3359 0.2072 5 1 3.7576 0.8026 1.1252 6 6 4.0826 2.7694 0.2471 7 6 5.4407 2.6822 -0.4793 8 6 5.5779 1.2023 -0.8969 9 7 4.1813 0.6996 -0.9579 10 6 4.1440 -0.7651 -0.8518 11 6 4.3624 -1.1767 0.6057 12 6 4.4726 -2.6770 0.6929 13 1 4.3943 -3.2772 -0.2017 14 6 4.6725 -3.2837 1.9147 15 7 4.7682 -4.5932 1.9909 16 14 4.8073 -2.2458 3.4619 17 1 3.4576 -2.0614 4.0535 18 1 5.6881 -2.9305 4.4422 19 1 5.3832 -0.9203 3.1203 20 1 -0.3634 -1.0277 0.0005 21 1 -0.3634 0.5139 0.8900 22 1 -0.3634 0.5138 -0.8900 23 1 1.8306 -0.5262 -0.7813 24 1 1.5316 1.9387 0.8069 25 1 1.7702 1.8471 -0.9546 26 1 4.2249 3.0917 1.2785 27 1 3.4174 3.4570 -0.2754 28 1 5.4414 3.3255 -1.3592 29 1 6.2496 2.9616 0.1957 30 1 6.0525 1.1258 -1.8752 31 1 6.1491 0.6485 -0.1519 32 1 3.1742 -1.1294 -1.1907 33 1 4.9305 -1.1946 -1.4723 34 1 5.2809 -0.7226 0.9775 35 1 3.5198 -0.8385 1.2088 36 1 4.9084 -5.0200 2.8506 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000169275723.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:42:22 Heat of formation + Delta-G solvation = -12.269122 kcal Electronic energy + Delta-G solvation = -15080.337913 eV Core-core repulsion = 12791.492958 eV Total energy + Delta-G solvation = -2288.844955 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.52625 -36.42571 -35.49315 -33.74392 -31.05828 -30.44929 -26.77085 -26.12235 -24.09572 -23.09420 -21.65996 -20.24866 -19.11769 -17.55958 -16.49218 -16.32451 -15.99166 -15.40266 -14.92702 -14.91119 -14.72402 -14.37021 -13.79194 -13.67813 -13.08475 -12.93945 -12.72748 -12.52053 -12.39888 -12.17522 -11.95542 -11.82065 -11.66395 -11.42576 -11.33365 -11.09483 -10.70797 -9.27859 -9.15478 -8.27852 -6.29069 1.32342 1.33942 1.44371 2.35398 3.08130 3.18835 3.35894 3.86872 3.89755 4.14673 4.31588 4.40139 4.51372 4.55552 4.64554 4.65948 4.72200 4.77450 4.79439 4.93159 5.02336 5.04223 5.07429 5.12010 5.26949 5.31972 5.47022 5.53849 5.67827 6.06674 6.09075 6.24975 6.35084 6.52056 6.78484 7.34314 8.89022 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024574 B = 0.011398 C = 0.009573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1139.127407 B = 2455.937288 C = 2924.148692 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.031 3.969 2 N -0.718 5.718 3 C 0.084 3.916 4 C 0.041 3.959 5 H 0.049 0.951 6 C -0.114 4.114 7 C -0.115 4.115 8 C 0.021 3.979 9 N -0.509 5.509 10 C 0.069 3.931 11 C -0.027 4.027 12 C -0.518 4.518 13 H 0.032 0.968 14 C 0.007 3.993 15 N -0.952 5.952 16 Si 0.948 3.052 17 H -0.269 1.269 18 H -0.285 1.285 19 H -0.255 1.255 20 H 0.061 0.939 21 H 0.067 0.933 22 H 0.030 0.970 23 H 0.343 0.657 24 H 0.081 0.919 25 H 0.041 0.959 26 H 0.074 0.926 27 H 0.086 0.914 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.084 0.916 31 H 0.026 0.974 32 H 0.070 0.930 33 H 0.050 0.950 34 H 0.001 0.999 35 H 0.041 0.959 36 H 0.264 0.736 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.753 17.156 -3.477 17.903 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 N -0.353 5.353 3 C -0.046 4.046 4 C -0.067 4.067 5 H 0.067 0.933 6 C -0.153 4.153 7 C -0.153 4.153 8 C -0.107 4.107 9 N -0.233 5.233 10 C -0.060 4.060 11 C -0.065 4.065 12 C -0.556 4.556 13 H 0.051 0.949 14 C -0.189 4.189 15 N -0.593 5.593 16 Si 0.772 3.228 17 H -0.194 1.194 18 H -0.211 1.211 19 H -0.179 1.179 20 H 0.080 0.920 21 H 0.086 0.914 22 H 0.048 0.952 23 H 0.165 0.835 24 H 0.099 0.901 25 H 0.059 0.941 26 H 0.093 0.907 27 H 0.104 0.896 28 H 0.104 0.896 29 H 0.094 0.906 30 H 0.102 0.898 31 H 0.045 0.955 32 H 0.088 0.912 33 H 0.068 0.932 34 H 0.019 0.981 35 H 0.059 0.941 36 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -3.959 17.078 -3.218 17.824 hybrid contribution 0.396 -0.628 0.584 0.945 sum -3.562 16.450 -2.634 17.037 Atomic orbital electron populations 1.22173 0.87235 1.01808 1.00600 1.60595 1.08478 1.14817 1.51421 1.21857 0.92896 0.89411 1.00414 1.23026 0.94804 0.95546 0.93364 0.93344 1.22310 0.96919 0.94800 1.01247 1.22257 0.97322 0.94752 1.00938 1.23191 0.90399 0.96201 1.00915 1.65704 1.12189 1.05955 1.39417 1.22032 1.00527 0.87292 0.96124 1.19988 0.96027 0.94154 0.96369 1.21386 1.48147 0.92368 0.93734 0.94925 1.25894 0.94564 0.95854 1.02593 1.70060 1.52371 1.10650 1.26238 0.85698 0.78648 0.79484 0.78967 1.19372 1.21077 1.17944 0.92024 0.91395 0.95179 0.83451 0.90060 0.94099 0.90706 0.89567 0.89564 0.90626 0.89756 0.95513 0.91221 0.93151 0.98076 0.94123 0.92693 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.81 10.68 127.69 1.36 2.18 16 2 N -0.72 -23.37 5.60 -537.15 -3.01 -26.38 16 3 C 0.08 2.35 5.29 86.30 0.46 2.81 16 4 C 0.04 1.29 2.25 45.03 0.10 1.39 16 5 H 0.05 1.84 5.22 -2.39 -0.01 1.83 16 6 C -0.11 -2.67 6.55 31.49 0.21 -2.46 16 7 C -0.11 -2.62 7.00 31.49 0.22 -2.40 16 8 C 0.02 0.63 6.29 86.45 0.54 1.18 16 9 N -0.51 -17.04 5.32 -856.25 -4.56 -21.60 16 10 C 0.07 2.81 4.75 86.31 0.41 3.22 16 11 C -0.03 -1.30 2.62 29.85 0.08 -1.22 16 12 C -0.52 -30.59 9.66 25.60 0.25 -30.34 16 13 H 0.03 2.10 7.99 -2.91 -0.02 2.08 16 14 C 0.01 0.44 5.47 84.65 0.46 0.91 16 15 N -0.95 -61.15 13.96 21.45 0.30 -60.85 16 16 Si 0.95 46.55 27.47 68.60 1.88 48.44 16 17 H -0.27 -12.81 7.11 99.48 0.71 -12.10 16 18 H -0.28 -13.64 7.11 99.48 0.71 -12.94 16 19 H -0.26 -11.86 6.54 99.48 0.65 -11.21 16 20 H 0.06 1.63 8.14 -2.39 -0.02 1.61 16 21 H 0.07 1.62 8.13 -2.39 -0.02 1.60 16 22 H 0.03 0.68 8.14 -2.39 -0.02 0.66 16 23 H 0.34 11.93 5.48 -89.69 -0.49 11.44 16 24 H 0.08 2.03 8.09 -2.39 -0.02 2.01 16 25 H 0.04 1.07 8.14 -2.39 -0.02 1.05 16 26 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 27 H 0.09 1.69 7.86 -2.39 -0.02 1.67 16 28 H 0.09 1.65 8.14 -2.39 -0.02 1.63 16 29 H 0.08 1.56 8.14 -2.39 -0.02 1.54 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 H 0.03 0.93 6.63 -2.39 -0.02 0.91 16 32 H 0.07 2.84 5.44 -2.39 -0.01 2.82 16 33 H 0.05 2.13 7.99 -2.39 -0.02 2.11 16 34 H 0.00 0.05 5.78 -2.39 -0.01 0.04 16 35 H 0.04 1.98 5.03 -2.39 -0.01 1.97 16 36 H 0.26 15.87 8.31 -92.71 -0.77 15.10 16 Total: -1.00 -66.63 272.60 -0.79 -67.42 By element: Atomic # 1 Polarization: 17.22 SS G_CDS: 0.50 Total: 17.72 kcal Atomic # 6 Polarization: -28.84 SS G_CDS: 4.09 Total: -24.75 kcal Atomic # 7 Polarization: -101.56 SS G_CDS: -7.26 Total: -108.83 kcal Atomic # 14 Polarization: 46.55 SS G_CDS: 1.88 Total: 48.44 kcal Total: -66.63 -0.79 -67.42 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000169275723.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.153 kcal (2) G-P(sol) polarization free energy of solvation -66.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.791 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.422 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.269 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds