Wall clock time and date at job start Mon Mar 30 2020 02:52:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42896 * 1 3 3 C 1.35525 * 117.00073 * 2 1 4 4 C 1.38879 * 120.96824 * 359.97438 * 3 2 1 5 5 C 1.38160 * 119.39207 * 180.02562 * 4 3 2 6 6 N 1.32228 * 121.43980 * 359.97438 * 5 4 3 7 7 C 1.31607 * 122.13318 * 359.72500 * 6 5 4 8 8 Cl 1.73598 * 119.79246 * 180.29433 * 7 6 5 9 9 C 1.40838 * 120.40773 * 0.53675 * 7 6 5 10 10 C 1.41153 * 120.71810 * 179.75370 * 9 7 6 11 11 H 1.08002 * 120.00380 * 36.79199 * 10 9 7 12 12 C 1.39937 * 120.00048 * 216.79522 * 10 9 7 13 13 N 1.30879 * 119.99847 * 24.50315 * 12 10 9 14 14 Si 1.86799 * 120.00020 * 204.50333 * 12 10 9 15 15 H 1.48497 * 109.47173 * 179.97438 * 14 12 10 16 16 H 1.48494 * 109.47283 * 300.00112 * 14 12 10 17 17 H 1.48506 * 109.46849 * 60.00127 * 14 12 10 18 18 H 1.09003 * 109.47208 * 299.99936 * 1 2 3 19 19 H 1.09009 * 109.47178 * 59.99878 * 1 2 3 20 20 H 1.09003 * 109.47353 * 179.97438 * 1 2 3 21 21 H 1.07998 * 120.30594 * 0.04484 * 4 3 2 22 22 H 1.07999 * 119.28045 * 179.97438 * 5 4 3 23 23 H 0.96996 * 119.99794 * 5.60419 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0442 1.2075 0.0000 4 6 1.3077 2.3849 -0.0005 5 6 1.9685 3.5982 -0.0011 6 7 3.2892 3.6642 -0.0006 7 6 4.0440 2.5861 0.0058 8 17 5.7728 2.7436 0.0138 9 6 3.4578 1.3055 0.0010 10 6 4.2611 0.1449 0.0026 11 1 5.1818 0.1261 0.5668 12 6 3.8645 -0.9815 -0.7270 13 7 3.0658 -0.8474 -1.7550 14 14 4.4752 -2.6765 -0.2335 15 1 3.9142 -3.6935 -1.1587 16 1 5.9582 -2.7080 -0.3030 17 1 4.0382 -2.9755 1.1539 18 1 -0.3634 0.5138 0.8900 19 1 -0.3634 0.5139 -0.8900 20 1 -0.3634 -1.0277 -0.0005 21 1 0.2282 2.3524 -0.0002 22 1 1.3939 4.5126 -0.0019 23 1 2.8138 0.0379 -2.0611 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214317008.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:19 Heat of formation + Delta-G solvation = -42.752236 kcal Electronic energy + Delta-G solvation = -12205.530997 eV Core-core repulsion = 9850.855415 eV Total energy + Delta-G solvation = -2354.675583 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.15 seconds Orbital eigenvalues (eV) -41.00873 -38.67607 -37.01760 -35.97983 -31.97648 -31.55035 -28.27629 -27.08840 -23.58241 -23.26504 -20.00905 -18.80947 -17.82283 -16.55018 -16.24093 -15.91247 -15.51723 -15.13918 -14.84963 -14.44888 -14.05099 -13.12036 -12.72056 -12.53501 -12.22466 -12.02320 -11.94848 -11.86555 -11.44358 -11.02141 -10.18259 -9.66658 -9.50881 -9.13794 -6.44979 0.44225 0.80101 1.37951 1.55007 1.65174 1.82704 2.37103 2.70370 2.75489 3.33218 4.12616 4.24835 4.33423 4.41580 4.49501 4.67559 4.69142 5.10177 5.33335 5.68076 5.74216 5.99304 6.24369 6.74903 6.90051 7.36795 8.07654 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.025599 B = 0.017357 C = 0.010931 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1093.540059 B = 1612.835363 C = 2560.821054 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.309 6.309 3 C 0.063 3.937 4 C -0.224 4.224 5 C 0.010 3.990 6 N -0.494 5.494 7 C 0.051 3.949 8 Cl -0.062 7.062 9 C 0.016 3.984 10 C -0.519 4.519 11 H 0.080 0.920 12 C 0.016 3.984 13 N -0.780 5.780 14 Si 1.113 2.887 15 H -0.271 1.271 16 H -0.262 1.262 17 H -0.267 1.267 18 H 0.061 0.939 19 H 0.052 0.948 20 H 0.108 0.892 21 H 0.151 0.849 22 H 0.171 0.829 23 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.072 -1.021 2.307 4.790 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.220 6.220 3 C 0.010 3.990 4 C -0.245 4.245 5 C -0.149 4.149 6 N -0.207 5.207 7 C -0.113 4.113 8 Cl -0.034 7.034 9 C 0.009 3.991 10 C -0.547 4.547 11 H 0.098 0.902 12 C -0.203 4.203 13 N -0.401 5.401 14 Si 0.931 3.069 15 H -0.195 1.195 16 H -0.186 1.186 17 H -0.191 1.191 18 H 0.079 0.921 19 H 0.071 0.929 20 H 0.126 0.874 21 H 0.168 0.832 22 H 0.188 0.812 23 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -3.605 -2.025 1.881 4.542 hybrid contribution -0.344 1.378 0.282 1.448 sum -3.949 -0.647 2.163 4.549 Atomic orbital electron populations 1.23159 0.78327 1.04424 1.01243 1.86139 1.21586 1.25962 1.88328 1.19572 0.91681 0.85098 1.02690 1.22042 1.01186 0.92546 1.08751 1.22035 0.87999 0.97441 1.07415 1.66329 1.07845 1.32957 1.13548 1.21344 0.85387 0.89008 1.15592 1.98220 1.09757 1.98120 1.97330 1.17904 0.90525 0.93433 0.97201 1.20446 1.08288 0.97689 1.28254 0.90238 1.28114 0.92484 1.07994 0.91714 1.70517 1.23115 1.28239 1.18250 0.83028 0.77099 0.69581 0.77179 1.19503 1.18646 1.19141 0.92054 0.92926 0.87359 0.83156 0.81202 0.91662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.75 9.84 113.37 1.12 1.87 14 2 O -0.31 -14.00 7.53 -88.28 -0.67 -14.67 14 3 C 0.06 3.01 5.70 23.28 0.13 3.14 14 4 C -0.22 -9.22 9.10 22.40 0.20 -9.01 14 5 C 0.01 0.43 11.16 84.61 0.94 1.38 14 6 N -0.49 -23.90 10.31 -184.78 -1.91 -25.80 14 7 C 0.05 2.62 7.35 85.36 0.63 3.24 14 8 Cl -0.06 -2.88 27.96 -2.72 -0.08 -2.96 14 9 C 0.02 0.82 5.02 -21.07 -0.11 0.72 14 10 C -0.52 -27.46 8.16 23.40 0.19 -27.27 14 11 H 0.08 4.18 7.54 -2.91 -0.02 4.16 14 12 C 0.02 0.79 4.32 85.25 0.37 1.15 14 13 N -0.78 -40.85 11.99 21.83 0.26 -40.59 14 14 Si 1.11 43.10 30.00 68.60 2.06 45.15 14 15 H -0.27 -10.20 7.11 99.48 0.71 -9.49 14 16 H -0.26 -9.44 7.11 99.48 0.71 -8.73 14 17 H -0.27 -9.88 7.11 99.48 0.71 -9.17 14 18 H 0.06 1.71 7.71 -2.39 -0.02 1.69 14 19 H 0.05 1.58 7.71 -2.38 -0.02 1.56 14 20 H 0.11 2.98 8.14 -2.39 -0.02 2.96 14 21 H 0.15 4.93 6.45 -2.91 -0.02 4.91 14 22 H 0.17 5.68 8.06 -2.91 -0.02 5.65 14 23 H 0.27 15.07 7.07 -92.71 -0.66 14.41 14 Total: -1.00 -60.18 222.44 4.49 -55.69 By element: Atomic # 1 Polarization: 6.61 SS G_CDS: 1.34 Total: 7.96 kcal Atomic # 6 Polarization: -28.26 SS G_CDS: 3.48 Total: -24.78 kcal Atomic # 7 Polarization: -64.74 SS G_CDS: -1.64 Total: -66.39 kcal Atomic # 8 Polarization: -14.00 SS G_CDS: -0.67 Total: -14.67 kcal Atomic # 14 Polarization: 43.10 SS G_CDS: 2.06 Total: 45.15 kcal Atomic # 17 Polarization: -2.88 SS G_CDS: -0.08 Total: -2.96 kcal Total: -60.18 4.49 -55.69 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214317008.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.934 kcal (2) G-P(sol) polarization free energy of solvation -60.180 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.246 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.493 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -55.687 kcal (6) G-S(sol) free energy of system = (1) + (5) -42.752 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.15 seconds