Wall clock time and date at job start Mon Mar 30 2020 02:52:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42903 * 1 3 3 C 1.35583 * 116.99955 * 2 1 4 4 C 1.38895 * 120.57629 * 359.97438 * 3 2 1 5 5 C 1.38741 * 118.53292 * 180.02562 * 4 3 2 6 6 Cl 1.73603 * 120.19159 * 179.97438 * 5 4 3 7 7 C 1.39125 * 119.62475 * 359.97438 * 5 4 3 8 8 N 1.31322 * 121.15744 * 0.02562 * 7 5 4 9 9 C 1.33694 * 121.58176 * 0.02562 * 8 7 5 10 10 C 1.41001 * 119.87551 * 179.97438 * 9 8 7 11 11 H 1.08000 * 120.00233 * 179.97438 * 10 9 8 12 12 C 1.40046 * 119.99834 * 359.97438 * 10 9 8 13 13 N 1.30770 * 120.00082 * 0.02562 * 12 10 9 14 14 Si 1.86798 * 120.00088 * 180.02562 * 12 10 9 15 15 H 1.48506 * 109.46927 * 60.00333 * 14 12 10 16 16 H 1.48492 * 109.47435 * 180.02562 * 14 12 10 17 17 H 1.48505 * 109.47441 * 300.00587 * 14 12 10 18 18 H 1.09001 * 109.46539 * 60.00476 * 1 2 3 19 19 H 1.09006 * 109.47314 * 179.97438 * 1 2 3 20 20 H 1.08993 * 109.47639 * 300.00529 * 1 2 3 21 21 H 1.08000 * 120.73188 * 0.04587 * 4 3 2 22 22 H 1.08000 * 119.42353 * 179.72398 * 7 5 4 23 23 H 0.96998 * 120.00422 * 179.97438 * 13 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0446 1.2081 0.0000 4 6 1.2998 2.3805 -0.0005 5 6 1.9734 3.5934 -0.0011 6 17 1.0853 5.0851 -0.0024 7 6 3.3645 3.6076 -0.0005 8 7 4.0554 2.4907 0.0000 9 6 3.4551 1.2961 -0.0005 10 6 4.2322 0.1196 -0.0004 11 1 3.7494 -0.8465 -0.0004 12 6 5.6301 0.2038 -0.0004 13 7 6.2147 1.3736 0.0001 14 14 6.6597 -1.3548 -0.0011 15 1 6.3485 -2.1531 -1.2140 16 1 8.1007 -0.9962 -0.0003 17 1 6.3484 -2.1543 1.2110 18 1 -0.3632 0.5138 -0.8901 19 1 -0.3634 -1.0277 -0.0005 20 1 -0.3634 0.5139 0.8899 21 1 0.2203 2.3486 -0.0002 22 1 3.8855 4.5536 -0.0054 23 1 7.1829 1.4319 0.0005 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000214317167.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:52:12 Heat of formation + Delta-G solvation = -34.224668 kcal Electronic energy + Delta-G solvation = -11846.813155 eV Core-core repulsion = 9492.507355 eV Total energy + Delta-G solvation = -2354.305800 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.14 seconds Orbital eigenvalues (eV) -40.78264 -38.51576 -37.09804 -35.49551 -32.13946 -31.52797 -28.15978 -27.45182 -23.51212 -23.17501 -19.54964 -18.59859 -17.83814 -16.75225 -16.41046 -16.21506 -15.29869 -14.79881 -14.35868 -14.26061 -13.49013 -13.05804 -13.00815 -12.56166 -12.53310 -12.21796 -11.96012 -11.93481 -11.56337 -11.12966 -9.93821 -9.80199 -9.18914 -8.41090 -6.46515 0.65317 0.91387 1.42662 1.54157 1.55730 1.62402 2.22772 2.73560 2.74708 3.71844 4.11703 4.19700 4.39808 4.45787 4.56959 4.72714 4.75891 5.16606 5.25176 5.38616 5.83131 6.19039 6.26784 6.68350 6.99844 7.96612 8.35829 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.036103 B = 0.010653 C = 0.008262 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 775.375092 B = 2627.792059 C = 3388.023070 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.023 3.977 2 O -0.328 6.328 3 C -0.028 4.028 4 C -0.138 4.138 5 C -0.198 4.198 6 Cl -0.094 7.094 7 C 0.104 3.896 8 N -0.489 5.489 9 C 0.210 3.790 10 C -0.433 4.433 11 H 0.094 0.906 12 C 0.020 3.980 13 N -0.745 5.745 14 Si 0.992 3.008 15 H -0.258 1.258 16 H -0.265 1.265 17 H -0.258 1.258 18 H 0.052 0.948 19 H 0.119 0.881 20 H 0.052 0.948 21 H 0.140 0.860 22 H 0.143 0.857 23 H 0.285 0.715 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.417 -1.434 -0.006 5.604 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.072 4.072 2 O -0.241 6.241 3 C -0.076 4.076 4 C -0.162 4.162 5 C -0.230 4.230 6 Cl -0.066 7.066 7 C -0.060 4.060 8 N -0.204 5.204 9 C 0.084 3.916 10 C -0.463 4.463 11 H 0.112 0.888 12 C -0.203 4.203 13 N -0.367 5.367 14 Si 0.811 3.189 15 H -0.182 1.182 16 H -0.189 1.189 17 H -0.182 1.182 18 H 0.070 0.930 19 H 0.137 0.863 20 H 0.070 0.930 21 H 0.158 0.842 22 H 0.160 0.840 23 H 0.096 0.904 Dipole moment (debyes) X Y Z Total from point charges -4.317 -1.376 -0.006 4.531 hybrid contribution -0.886 0.050 0.000 0.888 sum -5.204 -1.325 -0.006 5.370 Atomic orbital electron populations 1.23170 0.78227 1.04770 1.01060 1.85915 1.21798 1.26433 1.89969 1.20165 0.92905 0.84408 1.10170 1.21051 0.99613 0.90391 1.05191 1.21271 0.92189 0.86227 1.23321 1.98219 1.76147 1.34233 1.97979 1.22839 0.89249 0.97740 0.96135 1.68980 1.35352 0.96446 1.19633 1.18719 0.86921 0.92915 0.93035 1.19904 0.91985 0.93169 1.41287 0.88833 1.27072 0.99383 1.01125 0.92681 1.70185 1.11771 1.27027 1.27717 0.85117 0.76677 0.76890 0.80221 1.18205 1.18902 1.18214 0.92975 0.86311 0.92964 0.84202 0.83967 0.90429 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.69 9.83 113.37 1.11 1.80 14 2 O -0.33 -14.34 9.62 -88.91 -0.86 -15.20 14 3 C -0.03 -1.35 6.73 23.19 0.16 -1.19 14 4 C -0.14 -6.05 8.92 22.55 0.20 -5.85 14 5 C -0.20 -8.78 6.36 22.60 0.14 -8.63 14 6 Cl -0.09 -3.41 28.98 -2.72 -0.08 -3.49 14 7 C 0.10 5.07 10.98 84.98 0.93 6.00 14 8 N -0.49 -27.16 7.85 -188.60 -1.48 -28.64 14 9 C 0.21 11.64 6.56 40.30 0.26 11.90 14 10 C -0.43 -23.39 8.95 23.39 0.21 -23.18 14 11 H 0.09 4.85 7.32 -2.91 -0.02 4.83 14 12 C 0.02 1.01 5.50 85.29 0.47 1.48 14 13 N -0.75 -39.30 11.46 21.84 0.25 -39.05 14 14 Si 0.99 37.26 29.56 68.60 2.03 39.29 14 15 H -0.26 -9.39 7.11 99.48 0.71 -8.68 14 16 H -0.26 -9.35 7.11 99.48 0.71 -8.64 14 17 H -0.26 -9.39 7.11 99.48 0.71 -8.69 14 18 H 0.05 1.46 7.69 -2.39 -0.02 1.45 14 19 H 0.12 2.76 8.14 -2.38 -0.02 2.74 14 20 H 0.05 1.47 7.69 -2.39 -0.02 1.45 14 21 H 0.14 5.20 6.44 -2.91 -0.02 5.18 14 22 H 0.14 6.30 8.06 -2.91 -0.02 6.27 14 23 H 0.28 13.46 8.29 -92.71 -0.77 12.69 14 Total: -1.00 -60.75 226.26 4.59 -56.16 By element: Atomic # 1 Polarization: 7.36 SS G_CDS: 1.23 Total: 8.60 kcal Atomic # 6 Polarization: -21.16 SS G_CDS: 3.49 Total: -17.67 kcal Atomic # 7 Polarization: -66.46 SS G_CDS: -1.23 Total: -67.69 kcal Atomic # 8 Polarization: -14.34 SS G_CDS: -0.86 Total: -15.20 kcal Atomic # 14 Polarization: 37.26 SS G_CDS: 2.03 Total: 39.29 kcal Atomic # 17 Polarization: -3.41 SS G_CDS: -0.08 Total: -3.49 kcal Total: -60.75 4.59 -56.16 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000214317167.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.937 kcal (2) G-P(sol) polarization free energy of solvation -60.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -38.811 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.586 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -56.162 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.225 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.14 seconds