Wall clock time and date at job start Mon Mar 30 2020 02:16:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.46769 * 2 1 4 4 C 1.46954 * 110.99881 * 66.04958 * 3 2 1 5 5 C 1.53052 * 109.36650 * 183.18585 * 4 3 2 6 6 H 1.08999 * 109.48717 * 61.58616 * 5 4 3 7 7 C 1.50698 * 109.49480 * 181.63216 * 5 4 3 8 8 H 1.08007 * 119.99227 * 0.02562 * 7 5 4 9 9 C 1.37872 * 120.00225 * 180.02562 * 7 5 4 10 10 N 1.31512 * 120.00040 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 119.99757 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47208 * 90.00041 * 11 9 7 13 13 H 1.48506 * 109.47182 * 209.99780 * 11 9 7 14 14 H 1.48500 * 109.47611 * 330.00118 * 11 9 7 15 15 N 1.46958 * 109.36142 * 301.59911 * 5 4 3 16 16 C 1.46954 * 110.88119 * 59.31954 * 15 5 4 17 17 C 1.46958 * 110.99672 * 189.84692 * 3 2 1 18 18 C 1.53004 * 109.49132 * 296.77794 * 17 3 2 19 19 C 1.52993 * 109.49124 * 56.84820 * 17 3 2 20 20 H 1.08992 * 109.47399 * 59.99697 * 1 2 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99524 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00295 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00475 * 2 1 3 25 25 H 1.08996 * 109.49398 * 303.15172 * 4 3 2 26 26 H 1.09005 * 109.48821 * 63.20072 * 4 3 2 27 27 H 0.97002 * 119.99661 * 179.97438 * 10 9 7 28 28 H 1.00897 * 111.00491 * 295.45041 * 15 5 4 29 29 H 1.09008 * 109.48898 * 60.64596 * 16 15 5 30 30 H 1.09004 * 109.48792 * 180.68661 * 16 15 5 31 31 H 1.09002 * 109.46913 * 60.00344 * 18 17 3 32 32 H 1.08996 * 109.46936 * 179.97438 * 18 17 3 33 33 H 1.09002 * 109.47080 * 300.00638 * 18 17 3 34 34 H 1.08998 * 109.47105 * 59.99780 * 19 17 3 35 35 H 1.08998 * 109.47355 * 180.02562 * 19 17 3 36 36 H 1.09005 * 109.47193 * 299.99734 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6700 2.0671 1.2538 5 6 2.1264 3.5263 1.1821 6 1 1.6094 4.0293 0.3650 7 6 1.8053 4.2181 2.4818 8 1 1.3241 3.6718 3.2797 9 6 2.1257 5.5482 2.6524 10 7 2.7120 6.2131 1.6809 11 14 1.7269 6.4058 4.2632 12 1 2.8744 6.2664 5.1955 13 1 1.4695 7.8457 4.0069 14 1 0.5200 5.7872 4.8680 15 7 3.5764 3.5722 0.9475 16 6 3.9260 2.8901 -0.3063 17 6 3.4696 1.4310 -0.2346 18 6 4.1950 0.7251 0.9127 19 6 3.7957 0.7287 -1.5542 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 0.5904 2.0306 1.3990 26 1 2.1661 1.5712 2.0882 27 1 2.9371 7.1490 1.8008 28 1 4.0816 3.1777 1.7267 29 1 3.4296 3.3858 -1.1407 30 1 5.0057 2.9270 -0.4516 31 1 3.8683 -0.3135 0.9648 32 1 5.2704 0.7590 0.7381 33 1 3.9630 1.2265 1.8524 34 1 3.2794 1.2327 -2.3712 35 1 4.8712 0.7626 -1.7277 36 1 3.4688 -0.3099 -1.5035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218990143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:22 Heat of formation + Delta-G solvation = 8.387299 kcal Electronic energy + Delta-G solvation = -15406.055948 eV Core-core repulsion = 13118.106723 eV Total energy + Delta-G solvation = -2287.949225 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.19 seconds Orbital eigenvalues (eV) -39.41170 -34.41779 -33.26558 -31.51588 -29.45839 -27.22267 -27.03309 -24.44691 -23.85386 -21.18151 -20.45659 -17.89601 -16.55701 -15.43820 -14.68838 -14.51948 -14.34306 -13.88715 -13.32916 -13.20013 -12.91004 -12.03916 -12.00401 -11.89122 -11.65160 -11.45520 -11.35842 -10.95227 -10.82891 -10.67801 -10.61759 -10.39468 -10.22005 -9.84289 -9.57749 -8.86826 -8.36932 -7.68405 -6.69677 -5.83464 -3.98271 3.35696 3.42809 3.45212 4.39166 4.55953 5.22198 5.30508 5.37610 5.43505 5.59781 5.63954 5.80155 5.84348 5.87399 6.00670 6.09256 6.10233 6.18859 6.31196 6.35860 6.37942 6.44853 6.50143 6.55136 6.64785 6.91320 6.94677 7.49078 7.77986 7.83994 7.97926 8.29389 8.66354 9.00661 9.17948 9.70346 11.20878 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039277 B = 0.009851 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.717303 B = 2841.740360 C = 3233.193952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.044 3.956 3 N -0.524 5.524 4 C 0.026 3.974 5 C 0.228 3.772 6 H 0.045 0.955 7 C -0.540 4.540 8 H 0.052 0.948 9 C 0.084 3.916 10 N -0.845 5.845 11 Si 0.882 3.118 12 H -0.282 1.282 13 H -0.287 1.287 14 H -0.276 1.276 15 N -0.648 5.648 16 C 0.072 3.928 17 C 0.066 3.934 18 C -0.178 4.178 19 C -0.135 4.135 20 H 0.060 0.940 21 H 0.048 0.952 22 H 0.056 0.944 23 H 0.023 0.977 24 H 0.069 0.931 25 H 0.066 0.934 26 H 0.021 0.979 27 H 0.255 0.745 28 H 0.317 0.683 29 H 0.067 0.933 30 H 0.055 0.945 31 H 0.046 0.954 32 H 0.054 0.946 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.048 0.952 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.886 -10.543 -3.661 11.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.084 4.084 3 N -0.248 5.248 4 C -0.103 4.103 5 C 0.120 3.880 6 H 0.063 0.937 7 C -0.579 4.579 8 H 0.070 0.930 9 C -0.123 4.123 10 N -0.480 5.480 11 Si 0.710 3.290 12 H -0.208 1.208 13 H -0.213 1.213 14 H -0.201 1.201 15 N -0.275 5.275 16 C -0.059 4.059 17 C -0.026 4.026 18 C -0.237 4.237 19 C -0.193 4.193 20 H 0.079 0.921 21 H 0.067 0.933 22 H 0.075 0.925 23 H 0.042 0.958 24 H 0.087 0.913 25 H 0.084 0.916 26 H 0.039 0.961 27 H 0.065 0.935 28 H 0.135 0.865 29 H 0.086 0.914 30 H 0.074 0.926 31 H 0.065 0.935 32 H 0.074 0.926 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.072 0.928 36 H 0.067 0.933 Dipole moment (debyes) X Y Z Total from point charges 0.709 -9.441 -4.403 10.441 hybrid contribution 0.102 -1.004 1.868 2.123 sum 0.811 -10.444 -2.535 10.778 Atomic orbital electron populations 1.21777 0.95512 1.00452 1.02678 1.22136 0.95619 0.90924 0.99771 1.62429 1.12086 1.13724 1.36585 1.23141 1.00395 0.99122 0.87650 1.19138 0.84495 0.86964 0.97434 0.93741 1.20922 1.41675 0.95380 0.99920 0.92976 1.24939 0.94276 0.97292 0.95776 1.70116 1.38230 1.08653 1.30983 0.86793 0.78596 0.78946 0.84678 1.20829 1.21315 1.20095 1.61069 1.09355 1.55425 1.01644 1.22092 0.98445 0.88580 0.96793 1.21947 0.87687 0.99051 0.93930 1.22441 1.00592 1.00059 1.00627 1.21856 1.00607 0.99534 0.97306 0.92113 0.93257 0.92489 0.95840 0.91270 0.91567 0.96092 0.93473 0.86512 0.91440 0.92638 0.93463 0.92647 0.91826 0.92075 0.92778 0.93319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.10 9.84 37.16 0.37 -1.73 16 2 C 0.04 0.68 4.84 -3.82 -0.02 0.66 16 3 N -0.52 -9.67 4.48 -218.82 -0.98 -10.65 16 4 C 0.03 0.55 4.24 -3.77 -0.02 0.53 16 5 C 0.23 5.72 2.45 -68.81 -0.17 5.55 16 6 H 0.04 1.28 8.14 -51.93 -0.42 0.85 16 7 C -0.54 -14.81 8.69 -34.44 -0.30 -15.11 16 8 H 0.05 1.42 7.74 -52.48 -0.41 1.01 16 9 C 0.08 2.35 5.39 -17.82 -0.10 2.25 16 10 N -0.85 -24.66 12.78 55.43 0.71 -23.95 16 11 Si 0.88 21.27 29.54 -169.99 -5.02 16.25 16 12 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 13 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 14 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 15 N -0.65 -15.36 5.80 -107.81 -0.63 -15.99 16 16 C 0.07 1.44 5.49 -3.77 -0.02 1.42 16 17 C 0.07 1.13 0.68 -131.54 -0.09 1.04 16 18 C -0.18 -2.88 7.50 37.16 0.28 -2.60 16 19 C -0.13 -1.93 8.18 37.15 0.30 -1.63 16 20 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.16 16 22 H 0.06 0.87 6.49 -51.93 -0.34 0.54 16 23 H 0.02 0.37 6.90 -51.93 -0.36 0.01 16 24 H 0.07 0.98 5.74 -51.93 -0.30 0.68 16 25 H 0.07 1.42 6.33 -51.93 -0.33 1.09 16 26 H 0.02 0.45 6.35 -51.93 -0.33 0.12 16 27 H 0.26 7.13 8.31 -40.82 -0.34 6.79 16 28 H 0.32 7.43 7.17 -39.29 -0.28 7.15 16 29 H 0.07 1.44 8.14 -51.92 -0.42 1.02 16 30 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.05 0.71 6.70 -51.93 -0.35 0.36 16 32 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 33 H 0.06 1.15 5.10 -51.93 -0.26 0.89 16 34 H 0.06 0.89 8.14 -51.93 -0.42 0.47 16 35 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 36 H 0.05 0.64 6.15 -51.93 -0.32 0.32 16 LS Contribution 269.32 15.07 4.06 4.06 Total: -1.00 -28.37 269.32 -7.41 -35.78 By element: Atomic # 1 Polarization: 9.91 SS G_CDS: -5.79 Total: 4.12 kcal Atomic # 6 Polarization: -9.85 SS G_CDS: 0.24 Total: -9.61 kcal Atomic # 7 Polarization: -49.70 SS G_CDS: -0.90 Total: -50.59 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -5.02 Total: 16.25 kcal Total LS contribution 4.06 Total: 4.06 kcal Total: -28.37 -7.41 -35.78 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218990143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.167 kcal (2) G-P(sol) polarization free energy of solvation -28.371 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.408 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.779 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.387 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.19 seconds