Wall clock time and date at job start Mon Mar 30 2020 02:16:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46901 * 109.46769 * 2 1 4 4 C 1.46954 * 110.99881 * 66.04958 * 3 2 1 5 5 C 1.53052 * 109.36650 * 183.18585 * 4 3 2 6 6 H 1.08999 * 109.48717 * 61.58616 * 5 4 3 7 7 C 1.50698 * 109.49480 * 181.63216 * 5 4 3 8 8 H 1.08007 * 119.99227 * 0.02562 * 7 5 4 9 9 C 1.37872 * 120.00225 * 180.02562 * 7 5 4 10 10 N 1.31512 * 120.00040 * 359.97438 * 9 7 5 11 11 Si 1.86798 * 119.99757 * 179.97438 * 9 7 5 12 12 H 1.48504 * 109.47208 * 90.00041 * 11 9 7 13 13 H 1.48506 * 109.47182 * 209.99780 * 11 9 7 14 14 H 1.48500 * 109.47611 * 330.00118 * 11 9 7 15 15 N 1.46958 * 109.36142 * 301.59911 * 5 4 3 16 16 C 1.46954 * 110.88119 * 59.31954 * 15 5 4 17 17 C 1.46958 * 110.99672 * 189.84692 * 3 2 1 18 18 C 1.53004 * 109.49132 * 296.77794 * 17 3 2 19 19 C 1.52993 * 109.49124 * 56.84820 * 17 3 2 20 20 H 1.08992 * 109.47399 * 59.99697 * 1 2 3 21 21 H 1.09004 * 109.46724 * 180.02562 * 1 2 3 22 22 H 1.09001 * 109.47194 * 299.99524 * 1 2 3 23 23 H 1.09002 * 109.47398 * 120.00295 * 2 1 3 24 24 H 1.09001 * 109.47194 * 240.00475 * 2 1 3 25 25 H 1.08996 * 109.49398 * 303.15172 * 4 3 2 26 26 H 1.09005 * 109.48821 * 63.20072 * 4 3 2 27 27 H 0.97002 * 119.99661 * 179.97438 * 10 9 7 28 28 H 1.00897 * 111.00491 * 295.45041 * 15 5 4 29 29 H 1.09008 * 109.48898 * 60.64596 * 16 15 5 30 30 H 1.09004 * 109.48792 * 180.68661 * 16 15 5 31 31 H 1.09002 * 109.46913 * 60.00344 * 18 17 3 32 32 H 1.08996 * 109.46936 * 179.97438 * 18 17 3 33 33 H 1.09002 * 109.47080 * 300.00638 * 18 17 3 34 34 H 1.08998 * 109.47105 * 59.99780 * 19 17 3 35 35 H 1.08998 * 109.47355 * 180.02562 * 19 17 3 36 36 H 1.09005 * 109.47193 * 299.99734 * 19 17 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6700 2.0671 1.2538 5 6 2.1264 3.5263 1.1821 6 1 1.6094 4.0293 0.3650 7 6 1.8053 4.2181 2.4818 8 1 1.3241 3.6718 3.2797 9 6 2.1257 5.5482 2.6524 10 7 2.7120 6.2131 1.6809 11 14 1.7269 6.4058 4.2632 12 1 2.8744 6.2664 5.1955 13 1 1.4695 7.8457 4.0069 14 1 0.5200 5.7872 4.8680 15 7 3.5764 3.5722 0.9475 16 6 3.9260 2.8901 -0.3063 17 6 3.4696 1.4310 -0.2346 18 6 4.1950 0.7251 0.9127 19 6 3.7957 0.7287 -1.5542 20 1 -0.3634 0.5138 -0.8899 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8900 23 1 1.8934 -0.5139 0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 0.5904 2.0306 1.3990 26 1 2.1661 1.5712 2.0882 27 1 2.9371 7.1490 1.8008 28 1 4.0816 3.1777 1.7267 29 1 3.4296 3.3858 -1.1407 30 1 5.0057 2.9270 -0.4516 31 1 3.8683 -0.3135 0.9648 32 1 5.2704 0.7590 0.7381 33 1 3.9630 1.2265 1.8524 34 1 3.2794 1.2327 -2.3712 35 1 4.8712 0.7626 -1.7277 36 1 3.4688 -0.3099 -1.5035 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218990143.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:21 Heat of formation + Delta-G solvation = -11.901332 kcal Electronic energy + Delta-G solvation = -15406.935729 eV Core-core repulsion = 13118.106723 eV Total energy + Delta-G solvation = -2288.829006 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.80 seconds Orbital eigenvalues (eV) -40.93275 -36.15811 -34.82619 -33.42990 -30.90863 -28.93853 -28.29340 -26.13488 -25.58680 -22.57712 -22.24389 -19.44289 -18.56616 -16.98480 -16.41109 -16.03893 -15.93905 -15.49142 -14.98441 -14.65961 -14.34487 -13.90746 -13.47217 -13.20212 -13.15409 -12.77904 -12.72705 -12.65163 -12.50017 -12.29993 -12.15647 -11.93870 -11.73429 -11.53449 -11.36044 -10.85212 -10.51521 -9.15865 -8.47885 -7.96085 -6.18684 1.44051 1.44821 1.54476 2.46791 3.04821 3.24742 3.86868 4.02370 4.07307 4.23789 4.29913 4.40558 4.51037 4.57983 4.64659 4.69591 4.77013 4.89535 4.90453 4.91604 5.03814 5.11543 5.14941 5.16307 5.23817 5.35817 5.45681 5.58932 5.76222 6.16786 6.31856 6.42255 6.66598 7.13410 7.15637 7.54219 9.07203 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.039277 B = 0.009851 C = 0.008658 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 712.717303 B = 2841.740360 C = 3233.193952 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.044 3.956 3 N -0.537 5.537 4 C 0.045 3.955 5 C 0.233 3.767 6 H -0.003 1.003 7 C -0.556 4.556 8 H 0.049 0.951 9 C 0.035 3.965 10 N -0.879 5.879 11 Si 0.949 3.051 12 H -0.277 1.277 13 H -0.285 1.285 14 H -0.270 1.270 15 N -0.667 5.667 16 C 0.073 3.927 17 C 0.066 3.934 18 C -0.170 4.170 19 C -0.127 4.127 20 H 0.054 0.946 21 H 0.078 0.922 22 H 0.039 0.961 23 H 0.027 0.973 24 H 0.091 0.909 25 H 0.058 0.942 26 H 0.018 0.982 27 H 0.255 0.745 28 H 0.318 0.682 29 H 0.044 0.956 30 H 0.073 0.927 31 H 0.063 0.937 32 H 0.072 0.928 33 H 0.038 0.962 34 H 0.054 0.946 35 H 0.072 0.928 36 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.306 -12.349 -3.590 12.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.084 4.084 3 N -0.261 5.261 4 C -0.085 4.085 5 C 0.124 3.876 6 H 0.015 0.985 7 C -0.595 4.595 8 H 0.068 0.932 9 C -0.168 4.168 10 N -0.515 5.515 11 Si 0.775 3.225 12 H -0.202 1.202 13 H -0.211 1.211 14 H -0.195 1.195 15 N -0.295 5.295 16 C -0.058 4.058 17 C -0.025 4.025 18 C -0.229 4.229 19 C -0.185 4.185 20 H 0.073 0.927 21 H 0.097 0.903 22 H 0.058 0.942 23 H 0.045 0.955 24 H 0.109 0.891 25 H 0.077 0.923 26 H 0.036 0.964 27 H 0.064 0.936 28 H 0.136 0.864 29 H 0.063 0.937 30 H 0.092 0.908 31 H 0.082 0.918 32 H 0.091 0.909 33 H 0.057 0.943 34 H 0.073 0.927 35 H 0.091 0.909 36 H 0.086 0.914 Dipole moment (debyes) X Y Z Total from point charges 1.127 -11.270 -4.338 12.128 hybrid contribution -0.027 -0.462 1.786 1.845 sum 1.101 -11.732 -2.552 12.057 Atomic orbital electron populations 1.21763 0.94777 1.02034 1.01544 1.22246 0.96280 0.88954 1.00876 1.62378 1.13291 1.15789 1.34685 1.22711 0.99651 0.97039 0.89117 1.18828 0.85247 0.88839 0.94662 0.98478 1.21276 1.41506 0.96019 1.00708 0.93235 1.25685 0.94136 0.97995 0.99021 1.70255 1.39477 1.08809 1.32967 0.85729 0.78530 0.77641 0.80590 1.20230 1.21094 1.19494 1.60818 1.08445 1.57241 1.03018 1.22080 0.99290 0.90315 0.94089 1.21916 0.87000 0.97351 0.96268 1.22349 1.01554 1.00357 0.98652 1.21796 1.01895 0.99956 0.94880 0.92679 0.90311 0.94186 0.95512 0.89089 0.92329 0.96388 0.93596 0.86439 0.93712 0.90836 0.91821 0.90933 0.94319 0.92678 0.90878 0.91434 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.83 9.84 71.98 0.71 -3.12 16 2 C 0.04 1.25 4.84 86.30 0.42 1.67 16 3 N -0.54 -19.33 4.48 -846.22 -3.79 -23.11 16 4 C 0.04 1.91 4.24 86.31 0.37 2.28 16 5 C 0.23 12.10 2.45 44.17 0.11 12.20 16 6 H 0.00 -0.17 8.14 -2.39 -0.02 -0.19 16 7 C -0.56 -31.25 8.69 25.60 0.22 -31.03 16 8 H 0.05 2.73 7.74 -2.91 -0.02 2.71 16 9 C 0.04 2.01 5.39 84.65 0.46 2.46 16 10 N -0.88 -52.57 12.78 21.45 0.27 -52.30 16 11 Si 0.95 44.23 29.54 68.60 2.03 46.26 16 12 H -0.28 -12.57 7.11 99.48 0.71 -11.86 16 13 H -0.29 -13.10 7.11 99.48 0.71 -12.40 16 14 H -0.27 -12.23 7.11 99.48 0.71 -11.52 16 15 N -0.67 -32.36 5.80 -494.99 -2.87 -35.23 16 16 C 0.07 2.90 5.49 86.31 0.47 3.37 16 17 C 0.07 2.16 0.68 3.53 0.00 2.16 16 18 C -0.17 -5.09 7.50 71.98 0.54 -4.55 16 19 C -0.13 -3.24 8.18 71.98 0.59 -2.65 16 20 H 0.05 1.52 8.14 -2.39 -0.02 1.50 16 21 H 0.08 1.63 8.14 -2.39 -0.02 1.61 16 22 H 0.04 1.19 6.49 -2.39 -0.02 1.17 16 23 H 0.03 0.76 6.90 -2.39 -0.02 0.74 16 24 H 0.09 2.23 5.74 -2.39 -0.01 2.21 16 25 H 0.06 2.56 6.33 -2.39 -0.02 2.54 16 26 H 0.02 0.78 6.35 -2.38 -0.02 0.77 16 27 H 0.26 14.54 8.31 -92.71 -0.77 13.77 16 28 H 0.32 15.13 7.17 -89.70 -0.64 14.48 16 29 H 0.04 1.95 8.14 -2.38 -0.02 1.93 16 30 H 0.07 2.61 8.14 -2.39 -0.02 2.59 16 31 H 0.06 1.69 6.70 -2.39 -0.02 1.68 16 32 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 33 H 0.04 1.35 5.10 -2.39 -0.01 1.34 16 34 H 0.05 1.47 8.14 -2.39 -0.02 1.46 16 35 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 36 H 0.07 1.48 6.15 -2.38 -0.01 1.47 16 Total: -1.00 -62.05 269.32 -0.06 -62.12 By element: Atomic # 1 Polarization: 19.06 SS G_CDS: 0.41 Total: 19.47 kcal Atomic # 6 Polarization: -21.09 SS G_CDS: 3.88 Total: -17.21 kcal Atomic # 7 Polarization: -104.25 SS G_CDS: -6.38 Total: -110.64 kcal Atomic # 14 Polarization: 44.23 SS G_CDS: 2.03 Total: 46.26 kcal Total: -62.05 -0.06 -62.12 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218990143.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.216 kcal (2) G-P(sol) polarization free energy of solvation -62.053 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -11.837 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.118 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.901 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.80 seconds