Wall clock time and date at job start Mon Mar 30 2020 02:16:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46892 * 109.46923 * 2 1 4 4 C 1.46962 * 111.00224 * 293.94886 * 3 2 1 5 5 C 1.53046 * 109.36580 * 176.81613 * 4 3 2 6 6 H 1.09008 * 109.48716 * 298.41149 * 5 4 3 7 7 C 1.50699 * 109.48776 * 178.37558 * 5 4 3 8 8 H 1.07999 * 119.99515 * 268.06993 * 7 5 4 9 9 C 1.37878 * 120.00437 * 88.07150 * 7 5 4 10 10 N 1.31511 * 119.99706 * 353.55189 * 9 7 5 11 11 Si 1.86795 * 119.99939 * 173.54540 * 9 7 5 12 12 H 1.48505 * 109.47118 * 60.00484 * 11 9 7 13 13 H 1.48498 * 109.47793 * 300.00179 * 11 9 7 14 14 H 1.48504 * 109.47175 * 180.02562 * 11 9 7 15 15 N 1.46952 * 109.36675 * 58.40109 * 5 4 3 16 16 C 1.46899 * 111.00174 * 176.80783 * 15 5 4 17 17 C 1.46954 * 110.88442 * 300.68333 * 15 5 4 18 18 C 1.46963 * 110.99953 * 170.15665 * 3 2 1 19 19 H 1.09006 * 109.48642 * 303.15643 * 18 3 2 20 20 C 1.52998 * 109.48904 * 63.21700 * 18 3 2 21 21 H 1.08997 * 109.47116 * 299.99846 * 1 2 3 22 22 H 1.09004 * 109.47400 * 59.99763 * 1 2 3 23 23 H 1.09000 * 109.47158 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47014 * 239.99607 * 2 1 3 25 25 H 1.09003 * 109.46806 * 119.99766 * 2 1 3 26 26 H 1.09003 * 109.48345 * 56.84627 * 4 3 2 27 27 H 1.08994 * 109.48747 * 296.78513 * 4 3 2 28 28 H 0.96997 * 120.00331 * 2.06608 * 10 9 7 29 29 H 1.08999 * 109.47016 * 54.45632 * 16 15 5 30 30 H 1.09000 * 109.47583 * 174.45151 * 16 15 5 31 31 H 1.09000 * 109.47508 * 294.45832 * 16 15 5 32 32 H 1.09003 * 109.48418 * 299.34818 * 17 15 5 33 33 H 1.09001 * 109.50635 * 179.29624 * 17 15 5 34 34 H 1.09000 * 109.47279 * 60.00407 * 20 18 3 35 35 H 1.09002 * 109.46998 * 180.02562 * 20 18 3 36 36 H 1.09002 * 109.47144 * 300.00360 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6701 2.0671 -1.2539 5 6 2.1266 3.5262 -1.1821 6 1 1.6095 4.0292 -0.3649 7 6 1.8053 4.2180 -2.4818 8 1 2.5392 4.2474 -3.2736 9 6 0.5746 4.8134 -2.6601 10 7 -0.3633 4.6700 -1.7494 11 14 0.2395 5.8239 -4.1950 12 1 0.4008 4.9667 -5.3969 13 1 1.1986 6.9556 -4.2619 14 1 -1.1472 6.3530 -4.1463 15 7 3.5765 3.5721 -0.9474 16 6 4.0663 4.9571 -0.9476 17 6 3.9262 2.8899 0.3063 18 6 3.4697 1.4309 0.2346 19 1 3.7020 0.9305 1.1747 20 6 4.1950 0.7250 -0.9128 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 0.5904 2.0306 -1.3989 27 1 2.1664 1.5714 -2.0881 28 1 -0.1796 4.1705 -0.9385 29 1 3.4976 5.5436 -0.2259 30 1 5.1215 4.9694 -0.6747 31 1 3.9430 5.3860 -1.9420 32 1 3.4299 3.3857 1.1406 33 1 5.0058 2.9265 0.4517 34 1 3.9631 1.2263 -1.8524 35 1 5.2704 0.7588 -0.7383 36 1 3.8682 -0.3136 -0.9649 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218990802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:33 Heat of formation + Delta-G solvation = 5.937355 kcal Electronic energy + Delta-G solvation = -15472.502348 eV Core-core repulsion = 13184.446885 eV Total energy + Delta-G solvation = -2288.055463 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.07013 -35.30119 -33.23551 -31.46547 -29.63363 -26.99757 -26.45375 -24.43087 -23.10231 -21.56425 -20.78400 -18.02375 -16.77485 -15.64467 -14.75729 -14.44381 -14.29624 -13.78669 -13.60953 -13.37456 -12.71001 -12.45338 -12.02431 -11.76107 -11.48455 -11.25025 -11.13770 -11.02975 -10.82625 -10.81823 -10.46587 -10.17770 -10.09870 -10.03096 -9.65981 -8.63601 -8.30380 -7.62425 -7.18425 -6.36412 -4.08042 3.43845 3.44865 3.64026 4.47788 4.56631 4.99605 5.34535 5.39240 5.46205 5.60427 5.75131 5.78597 5.88500 6.01420 6.03160 6.16866 6.19022 6.29123 6.33483 6.41733 6.47067 6.51105 6.61624 6.62794 6.83433 6.91056 7.09294 7.35181 7.67923 7.79338 7.96760 8.07587 8.43030 8.61766 8.88904 9.65417 11.01449 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029476 B = 0.012051 C = 0.009501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.701677 B = 2322.895195 C = 2946.372310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.052 3.948 3 N -0.541 5.541 4 C 0.067 3.933 5 C 0.206 3.794 6 H 0.010 0.990 7 C -0.587 4.587 8 H 0.056 0.944 9 C 0.021 3.979 10 N -0.908 5.908 11 Si 1.068 2.932 12 H -0.288 1.288 13 H -0.288 1.288 14 H -0.283 1.283 15 N -0.537 5.537 16 C 0.048 3.952 17 C 0.061 3.939 18 C 0.087 3.913 19 H 0.069 0.931 20 C -0.174 4.174 21 H 0.059 0.941 22 H 0.059 0.941 23 H 0.050 0.950 24 H 0.028 0.972 25 H 0.061 0.939 26 H 0.071 0.929 27 H 0.030 0.970 28 H 0.272 0.728 29 H 0.012 0.988 30 H 0.040 0.960 31 H 0.074 0.926 32 H 0.027 0.973 33 H 0.062 0.938 34 H 0.076 0.924 35 H 0.049 0.951 36 H 0.041 0.959 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.678 -6.082 2.964 8.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 N -0.266 5.266 4 C -0.060 4.060 5 C 0.099 3.901 6 H 0.028 0.972 7 C -0.627 4.627 8 H 0.074 0.926 9 C -0.184 4.184 10 N -0.544 5.544 11 Si 0.897 3.103 12 H -0.214 1.214 13 H -0.214 1.214 14 H -0.209 1.209 15 N -0.262 5.262 16 C -0.101 4.101 17 C -0.069 4.069 18 C -0.022 4.022 19 H 0.087 0.913 20 C -0.233 4.233 21 H 0.078 0.922 22 H 0.078 0.922 23 H 0.069 0.931 24 H 0.046 0.954 25 H 0.079 0.921 26 H 0.090 0.910 27 H 0.048 0.952 28 H 0.084 0.916 29 H 0.030 0.970 30 H 0.058 0.942 31 H 0.093 0.907 32 H 0.045 0.955 33 H 0.080 0.920 34 H 0.095 0.905 35 H 0.068 0.932 36 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges 4.482 -5.200 2.193 7.207 hybrid contribution 1.216 -0.973 0.842 1.770 sum 5.698 -6.173 3.035 8.932 Atomic orbital electron populations 1.21785 0.95290 1.00520 1.02947 1.21987 0.95833 0.90284 0.99509 1.62573 1.12064 1.14210 1.37722 1.22567 1.00141 0.95939 0.87380 1.19443 0.82357 0.91355 0.96942 0.97199 1.21818 1.02740 1.37907 1.00191 0.92597 1.25827 0.92433 0.96733 1.03402 1.70784 1.33922 1.40414 1.09296 0.83552 0.76096 0.76126 0.74576 1.21442 1.21445 1.20881 1.62231 1.18021 1.15113 1.30839 1.22038 0.96623 0.89528 1.01880 1.22076 0.98611 0.93772 0.92392 1.21638 0.87735 0.95716 0.97135 0.91283 1.22310 0.99907 0.99250 1.01810 0.92196 0.92184 0.93141 0.95421 0.92068 0.91038 0.95177 0.91636 0.96977 0.94165 0.90721 0.95510 0.92001 0.90502 0.93150 0.93980 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.38 9.84 37.16 0.37 -2.02 16 2 C 0.05 0.87 5.07 -3.83 -0.02 0.85 16 3 N -0.54 -10.73 4.66 -226.49 -1.06 -11.78 16 4 C 0.07 1.56 4.23 -3.77 -0.02 1.54 16 5 C 0.21 5.20 1.59 -68.81 -0.11 5.09 16 6 H 0.01 0.29 6.86 -51.92 -0.36 -0.06 16 7 C -0.59 -16.14 7.14 -34.44 -0.25 -16.38 16 8 H 0.06 1.57 7.64 -52.49 -0.40 1.16 16 9 C 0.02 0.60 5.45 -17.82 -0.10 0.50 16 10 N -0.91 -26.96 13.62 55.43 0.75 -26.21 16 11 Si 1.07 24.89 29.91 -169.99 -5.08 19.80 16 12 H -0.29 -6.45 7.11 56.52 0.40 -6.05 16 13 H -0.29 -6.43 7.11 56.52 0.40 -6.03 16 14 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 15 N -0.54 -11.90 4.09 -236.14 -0.97 -12.87 16 16 C 0.05 0.99 9.19 60.06 0.55 1.54 16 17 C 0.06 1.16 5.04 -3.77 -0.02 1.14 16 18 C 0.09 1.56 2.96 -67.66 -0.20 1.36 16 19 H 0.07 1.10 8.07 -51.93 -0.42 0.68 16 20 C -0.17 -2.93 8.37 37.16 0.31 -2.62 16 21 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 22 H 0.06 1.08 6.49 -51.93 -0.34 0.75 16 23 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 24 H 0.03 0.46 6.90 -51.93 -0.36 0.10 16 25 H 0.06 0.91 8.03 -51.93 -0.42 0.49 16 26 H 0.07 1.79 6.07 -51.93 -0.32 1.48 16 27 H 0.03 0.72 6.35 -51.93 -0.33 0.39 16 28 H 0.27 8.16 6.45 -40.82 -0.26 7.90 16 29 H 0.01 0.25 8.13 -51.93 -0.42 -0.17 16 30 H 0.04 0.70 8.04 -51.93 -0.42 0.29 16 31 H 0.07 1.64 7.10 -51.93 -0.37 1.27 16 32 H 0.03 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.06 1.04 8.08 -51.93 -0.42 0.62 16 34 H 0.08 1.52 5.94 -51.93 -0.31 1.21 16 35 H 0.05 0.75 8.14 -51.93 -0.42 0.33 16 36 H 0.04 0.65 6.70 -51.93 -0.35 0.30 16 LS Contribution 271.88 15.07 4.10 4.10 Total: -1.00 -28.91 271.88 -7.70 -36.61 By element: Atomic # 1 Polarization: 5.31 SS G_CDS: -5.97 Total: -0.66 kcal Atomic # 6 Polarization: -9.51 SS G_CDS: 0.52 Total: -8.99 kcal Atomic # 7 Polarization: -49.59 SS G_CDS: -1.27 Total: -50.86 kcal Atomic # 14 Polarization: 24.89 SS G_CDS: -5.08 Total: 19.80 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.91 -7.70 -36.61 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218990802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.545 kcal (2) G-P(sol) polarization free energy of solvation -28.910 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 13.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.698 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.608 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.937 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds