Wall clock time and date at job start Mon Mar 30 2020 02:16:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46892 * 109.46923 * 2 1 4 4 C 1.46962 * 111.00224 * 293.94886 * 3 2 1 5 5 C 1.53046 * 109.36580 * 176.81613 * 4 3 2 6 6 H 1.09008 * 109.48716 * 298.41149 * 5 4 3 7 7 C 1.50699 * 109.48776 * 178.37558 * 5 4 3 8 8 H 1.07999 * 119.99515 * 268.06993 * 7 5 4 9 9 C 1.37878 * 120.00437 * 88.07150 * 7 5 4 10 10 N 1.31511 * 119.99706 * 353.55189 * 9 7 5 11 11 Si 1.86795 * 119.99939 * 173.54540 * 9 7 5 12 12 H 1.48505 * 109.47118 * 60.00484 * 11 9 7 13 13 H 1.48498 * 109.47793 * 300.00179 * 11 9 7 14 14 H 1.48504 * 109.47175 * 180.02562 * 11 9 7 15 15 N 1.46952 * 109.36675 * 58.40109 * 5 4 3 16 16 C 1.46899 * 111.00174 * 176.80783 * 15 5 4 17 17 C 1.46954 * 110.88442 * 300.68333 * 15 5 4 18 18 C 1.46963 * 110.99953 * 170.15665 * 3 2 1 19 19 H 1.09006 * 109.48642 * 303.15643 * 18 3 2 20 20 C 1.52998 * 109.48904 * 63.21700 * 18 3 2 21 21 H 1.08997 * 109.47116 * 299.99846 * 1 2 3 22 22 H 1.09004 * 109.47400 * 59.99763 * 1 2 3 23 23 H 1.09000 * 109.47158 * 180.02562 * 1 2 3 24 24 H 1.08997 * 109.47014 * 239.99607 * 2 1 3 25 25 H 1.09003 * 109.46806 * 119.99766 * 2 1 3 26 26 H 1.09003 * 109.48345 * 56.84627 * 4 3 2 27 27 H 1.08994 * 109.48747 * 296.78513 * 4 3 2 28 28 H 0.96997 * 120.00331 * 2.06608 * 10 9 7 29 29 H 1.08999 * 109.47016 * 54.45632 * 16 15 5 30 30 H 1.09000 * 109.47583 * 174.45151 * 16 15 5 31 31 H 1.09000 * 109.47508 * 294.45832 * 16 15 5 32 32 H 1.09003 * 109.48418 * 299.34818 * 17 15 5 33 33 H 1.09001 * 109.50635 * 179.29624 * 17 15 5 34 34 H 1.09000 * 109.47279 * 60.00407 * 20 18 3 35 35 H 1.09002 * 109.46998 * 180.02562 * 20 18 3 36 36 H 1.09002 * 109.47144 * 300.00360 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3849 0.0000 4 6 1.6701 2.0671 -1.2539 5 6 2.1266 3.5262 -1.1821 6 1 1.6095 4.0292 -0.3649 7 6 1.8053 4.2180 -2.4818 8 1 2.5392 4.2474 -3.2736 9 6 0.5746 4.8134 -2.6601 10 7 -0.3633 4.6700 -1.7494 11 14 0.2395 5.8239 -4.1950 12 1 0.4008 4.9667 -5.3969 13 1 1.1986 6.9556 -4.2619 14 1 -1.1472 6.3530 -4.1463 15 7 3.5765 3.5721 -0.9474 16 6 4.0663 4.9571 -0.9476 17 6 3.9262 2.8899 0.3063 18 6 3.4697 1.4309 0.2346 19 1 3.7020 0.9305 1.1747 20 6 4.1950 0.7250 -0.9128 21 1 -0.3633 0.5138 0.8900 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3633 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8899 25 1 1.8933 -0.5138 0.8900 26 1 0.5904 2.0306 -1.3989 27 1 2.1664 1.5714 -2.0881 28 1 -0.1796 4.1705 -0.9385 29 1 3.4976 5.5436 -0.2259 30 1 5.1215 4.9694 -0.6747 31 1 3.9430 5.3860 -1.9420 32 1 3.4299 3.3857 1.1406 33 1 5.0058 2.9265 0.4517 34 1 3.9631 1.2263 -1.8524 35 1 5.2704 0.7588 -0.7383 36 1 3.8682 -0.3136 -0.9649 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218990802.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:32 Heat of formation + Delta-G solvation = -14.430056 kcal Electronic energy + Delta-G solvation = -15473.385545 eV Core-core repulsion = 13184.446885 eV Total energy + Delta-G solvation = -2288.938660 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.70966 -36.97740 -35.19353 -33.01741 -31.36818 -28.62428 -28.02775 -26.39375 -24.77832 -23.25940 -22.38699 -19.70003 -18.80837 -17.24525 -16.49913 -15.99686 -15.94138 -15.67051 -15.22383 -15.01714 -14.30082 -14.02145 -13.64153 -13.31887 -13.17794 -12.95062 -12.71587 -12.59681 -12.58359 -12.32703 -12.07263 -11.92827 -11.82678 -11.69993 -11.29924 -10.70827 -10.38880 -9.21409 -9.00634 -8.60041 -6.32634 1.53169 1.60506 1.80007 2.55993 2.99757 3.20333 3.35952 3.95375 4.04773 4.19307 4.32916 4.34348 4.52642 4.54027 4.57614 4.61320 4.67171 4.70924 4.79971 4.89380 4.90605 5.01303 5.05278 5.10970 5.16370 5.29143 5.40243 5.48591 5.88100 5.99967 6.19003 6.29922 6.49499 6.49777 6.75886 7.48992 8.76330 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.029476 B = 0.012051 C = 0.009501 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 949.701677 B = 2322.895195 C = 2946.372310 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.052 3.948 3 N -0.555 5.555 4 C 0.089 3.911 5 C 0.211 3.789 6 H -0.033 1.033 7 C -0.593 4.593 8 H 0.048 0.952 9 C -0.027 4.027 10 N -0.933 5.933 11 Si 1.113 2.887 12 H -0.271 1.271 13 H -0.271 1.271 14 H -0.286 1.286 15 N -0.542 5.542 16 C 0.050 3.950 17 C 0.058 3.942 18 C 0.083 3.917 19 H 0.102 0.898 20 C -0.164 4.164 21 H 0.051 0.949 22 H 0.029 0.971 23 H 0.083 0.917 24 H 0.031 0.969 25 H 0.091 0.909 26 H 0.042 0.958 27 H 0.020 0.980 28 H 0.257 0.743 29 H -0.004 1.004 30 H 0.079 0.921 31 H 0.057 0.943 32 H 0.012 0.988 33 H 0.095 0.905 34 H 0.042 0.958 35 H 0.073 0.927 36 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.331 -7.280 3.179 10.810 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.076 4.076 3 N -0.280 5.280 4 C -0.040 4.040 5 C 0.103 3.897 6 H -0.016 1.016 7 C -0.632 4.632 8 H 0.066 0.934 9 C -0.226 4.226 10 N -0.570 5.570 11 Si 0.935 3.065 12 H -0.197 1.197 13 H -0.196 1.196 14 H -0.211 1.211 15 N -0.266 5.266 16 C -0.098 4.098 17 C -0.071 4.071 18 C -0.026 4.026 19 H 0.119 0.881 20 C -0.222 4.222 21 H 0.070 0.930 22 H 0.048 0.952 23 H 0.101 0.899 24 H 0.050 0.950 25 H 0.110 0.890 26 H 0.060 0.940 27 H 0.038 0.962 28 H 0.067 0.933 29 H 0.014 0.986 30 H 0.098 0.902 31 H 0.075 0.925 32 H 0.031 0.969 33 H 0.113 0.887 34 H 0.061 0.939 35 H 0.092 0.908 36 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges 6.170 -6.418 2.421 9.226 hybrid contribution 0.776 -0.642 0.850 1.318 sum 6.946 -7.060 3.271 10.430 Atomic orbital electron populations 1.21762 0.95281 1.02057 1.01069 1.22103 0.95895 0.88523 1.01036 1.62500 1.13935 1.16198 1.35349 1.22044 0.97998 0.95044 0.88866 1.19238 0.84069 0.92007 0.94382 1.01551 1.22060 1.02424 1.37839 1.00838 0.93381 1.27211 0.92467 0.97457 1.05486 1.70907 1.34742 1.41775 1.09617 0.82978 0.76103 0.75523 0.71871 1.19667 1.19617 1.21150 1.62193 1.15543 1.15950 1.32950 1.22047 0.98652 0.88648 1.00479 1.22253 1.00464 0.94190 0.90186 1.21823 0.86392 0.95243 0.99110 0.88053 1.22187 1.01247 0.99411 0.99384 0.92955 0.95159 0.89858 0.95029 0.89039 0.93976 0.96225 0.93286 0.98584 0.90208 0.92465 0.96936 0.88672 0.93888 0.90815 0.92475 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.53 9.84 71.98 0.71 -3.82 16 2 C 0.05 1.63 5.07 86.31 0.44 2.06 16 3 N -0.55 -21.56 4.66 -870.49 -4.06 -25.62 16 4 C 0.09 4.23 4.23 86.31 0.37 4.60 16 5 C 0.21 10.99 1.59 44.17 0.07 11.06 16 6 H -0.03 -1.99 6.86 -2.38 -0.02 -2.01 16 7 C -0.59 -33.48 7.14 25.60 0.18 -33.30 16 8 H 0.05 2.74 7.64 -2.91 -0.02 2.72 16 9 C -0.03 -1.56 5.45 84.66 0.46 -1.10 16 10 N -0.93 -57.56 13.62 21.45 0.29 -57.26 16 11 Si 1.11 50.58 29.91 68.60 2.05 52.63 16 12 H -0.27 -11.53 7.11 99.48 0.71 -10.82 16 13 H -0.27 -11.47 7.11 99.48 0.71 -10.76 16 14 H -0.29 -13.05 7.11 99.48 0.71 -12.34 16 15 N -0.54 -23.85 4.09 -901.00 -3.69 -27.53 16 16 C 0.05 2.06 9.19 127.69 1.17 3.23 16 17 C 0.06 2.09 5.04 86.31 0.43 2.52 16 18 C 0.08 2.74 2.96 44.92 0.13 2.87 16 19 H 0.10 2.78 8.07 -2.38 -0.02 2.76 16 20 C -0.16 -5.01 8.37 71.98 0.60 -4.41 16 21 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 22 H 0.03 1.11 6.49 -2.39 -0.02 1.09 16 23 H 0.08 2.04 8.14 -2.39 -0.02 2.02 16 24 H 0.03 0.98 6.90 -2.39 -0.02 0.96 16 25 H 0.09 2.36 8.03 -2.39 -0.02 2.34 16 26 H 0.04 2.22 6.07 -2.39 -0.01 2.21 16 27 H 0.02 0.96 6.35 -2.39 -0.02 0.95 16 28 H 0.26 16.29 6.45 -92.71 -0.60 15.69 16 29 H 0.00 -0.20 8.13 -2.39 -0.02 -0.22 16 30 H 0.08 2.62 8.04 -2.39 -0.02 2.60 16 31 H 0.06 2.52 7.10 -2.39 -0.02 2.50 16 32 H 0.01 0.49 8.14 -2.39 -0.02 0.47 16 33 H 0.10 2.83 8.08 -2.39 -0.02 2.82 16 34 H 0.04 1.62 5.94 -2.39 -0.01 1.61 16 35 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.06 1.57 6.70 -2.39 -0.02 1.55 16 Total: -1.00 -64.75 271.88 0.37 -64.38 By element: Atomic # 1 Polarization: 8.49 SS G_CDS: 1.20 Total: 9.69 kcal Atomic # 6 Polarization: -20.85 SS G_CDS: 4.57 Total: -16.28 kcal Atomic # 7 Polarization: -102.96 SS G_CDS: -7.45 Total: -110.41 kcal Atomic # 14 Polarization: 50.58 SS G_CDS: 2.05 Total: 52.63 kcal Total: -64.75 0.37 -64.38 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218990802.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.946 kcal (2) G-P(sol) polarization free energy of solvation -64.748 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.802 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.372 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.376 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.430 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds