Wall clock time and date at job start Mon Mar 30 2020 02:16:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 N 1.46899 * 109.47270 * 2 1 4 4 C 1.46954 * 111.00150 * 46.19964 * 3 2 1 5 5 C 1.53047 * 109.36523 * 183.18898 * 4 3 2 6 6 H 1.09003 * 109.48854 * 61.56592 * 5 4 3 7 7 C 1.50701 * 109.50850 * 181.61922 * 5 4 3 8 8 H 1.07999 * 120.00005 * 94.82417 * 7 5 4 9 9 C 1.37873 * 120.00252 * 274.82685 * 7 5 4 10 10 N 1.31511 * 120.00330 * 185.02827 * 9 7 5 11 11 Si 1.86801 * 119.99762 * 5.03213 * 9 7 5 12 12 H 1.48500 * 109.47462 * 84.74573 * 11 9 7 13 13 H 1.48503 * 109.47144 * 204.74370 * 11 9 7 14 14 H 1.48495 * 109.47366 * 324.74209 * 11 9 7 15 15 N 1.46959 * 109.36490 * 301.60315 * 5 4 3 16 16 C 1.46899 * 111.00023 * 183.18951 * 15 5 4 17 17 C 1.46954 * 110.88335 * 59.31749 * 15 5 4 18 18 C 1.46959 * 111.00023 * 170.00421 * 3 2 1 19 19 H 1.09003 * 109.50222 * 296.78588 * 18 3 2 20 20 C 1.52994 * 109.49168 * 56.83853 * 18 3 2 21 21 H 1.08994 * 109.47225 * 300.00251 * 1 2 3 22 22 H 1.09008 * 109.47266 * 59.99928 * 1 2 3 23 23 H 1.09003 * 109.47248 * 180.02562 * 1 2 3 24 24 H 1.09008 * 109.47103 * 239.99843 * 2 1 3 25 25 H 1.08995 * 109.47025 * 120.00225 * 2 1 3 26 26 H 1.09001 * 109.48508 * 63.21977 * 4 3 2 27 27 H 1.09006 * 109.48442 * 303.15699 * 4 3 2 28 28 H 0.96997 * 120.00143 * 179.97438 * 10 9 7 29 29 H 1.08998 * 109.47323 * 295.42351 * 16 15 5 30 30 H 1.09002 * 109.47357 * 55.42115 * 16 15 5 31 31 H 1.09000 * 109.47287 * 175.42171 * 16 15 5 32 32 H 1.08996 * 109.48441 * 180.71459 * 17 15 5 33 33 H 1.09002 * 109.50235 * 60.66152 * 17 15 5 34 34 H 1.09005 * 109.47250 * 179.89114 * 20 18 3 35 35 H 1.08999 * 109.47166 * 59.89444 * 20 18 3 36 36 H 1.09005 * 109.47438 * 299.89405 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.3000 2.1981 0.9902 5 6 1.7826 3.6479 0.9036 6 1 1.5642 4.0453 -0.0876 7 6 1.0753 4.4767 1.9447 8 1 1.5391 4.6483 2.9048 9 6 -0.1638 5.0160 1.6715 10 7 -0.7372 5.8198 2.5401 11 14 -1.0282 4.6047 0.0674 12 1 -1.7695 3.3268 0.2179 13 1 -1.9804 5.6918 -0.2746 14 1 -0.0223 4.4688 -1.0164 15 7 3.2320 3.6940 1.1418 16 6 3.7217 5.0789 1.1418 17 6 3.9517 2.8809 0.1516 18 6 3.4691 1.4311 0.2381 19 1 3.6879 1.0335 1.2292 20 6 4.1872 0.5900 -0.8191 21 1 -0.3633 0.5138 0.8899 22 1 -0.3634 0.5139 -0.8900 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8899 26 1 1.4938 1.8093 1.9899 27 1 0.2301 2.1580 0.7851 28 1 -1.6088 6.1995 2.3477 29 1 3.5851 5.5127 0.1512 30 1 3.1629 5.6620 1.8738 31 1 4.7806 5.0900 1.4004 32 1 5.0215 2.9209 0.3567 33 1 3.7583 3.2695 -0.8482 34 1 5.2623 0.6260 -0.6433 35 1 3.9676 0.9873 -1.8101 36 1 3.8432 -0.4425 -0.7572 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218990848.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:34 Heat of formation + Delta-G solvation = 12.863454 kcal Electronic energy + Delta-G solvation = -15409.357235 eV Core-core repulsion = 13121.602111 eV Total energy + Delta-G solvation = -2287.755124 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.98793 -35.41089 -33.14288 -31.87250 -30.12919 -27.64851 -26.62314 -24.15957 -23.32826 -21.29557 -20.20839 -18.82331 -16.94667 -15.60482 -14.97973 -14.51775 -14.37212 -14.03007 -13.55500 -13.21582 -13.10675 -12.55245 -12.12816 -11.91303 -11.70660 -11.63310 -11.33562 -11.12177 -10.93688 -10.71387 -10.60411 -10.35350 -9.96728 -9.91511 -9.65020 -9.15130 -8.56063 -7.73623 -7.25718 -6.10581 -4.10273 3.27757 3.36188 3.42304 4.37704 4.41896 4.84282 5.20071 5.27397 5.42913 5.49219 5.59139 5.65306 5.78779 5.90078 5.95190 6.07298 6.14594 6.18134 6.26306 6.28624 6.34475 6.40474 6.49181 6.53210 6.60123 6.77659 7.01181 7.22419 7.45753 7.66284 7.77151 7.99870 8.15289 8.66462 8.99232 9.52700 11.01625 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027452 B = 0.014021 C = 0.010340 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.724462 B = 1996.562149 C = 2707.297305 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.052 3.948 3 N -0.545 5.545 4 C 0.060 3.940 5 C 0.183 3.817 6 H 0.016 0.984 7 C -0.505 4.505 8 H 0.082 0.918 9 C 0.075 3.925 10 N -0.896 5.896 11 Si 0.868 3.132 12 H -0.273 1.273 13 H -0.290 1.290 14 H -0.260 1.260 15 N -0.537 5.537 16 C 0.041 3.959 17 C 0.061 3.939 18 C 0.086 3.914 19 H 0.043 0.957 20 C -0.143 4.143 21 H 0.062 0.938 22 H 0.059 0.941 23 H 0.053 0.947 24 H 0.068 0.932 25 H 0.027 0.973 26 H 0.035 0.965 27 H 0.072 0.928 28 H 0.265 0.735 29 H 0.010 0.990 30 H 0.086 0.914 31 H 0.044 0.956 32 H 0.064 0.936 33 H 0.029 0.971 34 H 0.055 0.945 35 H 0.059 0.941 36 H 0.053 0.947 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.204 -9.110 -6.252 12.672 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.076 4.076 3 N -0.271 5.271 4 C -0.068 4.068 5 C 0.075 3.925 6 H 0.034 0.966 7 C -0.543 4.543 8 H 0.100 0.900 9 C -0.128 4.128 10 N -0.533 5.533 11 Si 0.695 3.305 12 H -0.199 1.199 13 H -0.216 1.216 14 H -0.185 1.185 15 N -0.261 5.261 16 C -0.108 4.108 17 C -0.068 4.068 18 C -0.023 4.023 19 H 0.061 0.939 20 C -0.201 4.201 21 H 0.081 0.919 22 H 0.078 0.922 23 H 0.072 0.928 24 H 0.086 0.914 25 H 0.045 0.955 26 H 0.054 0.946 27 H 0.090 0.910 28 H 0.074 0.926 29 H 0.028 0.972 30 H 0.104 0.896 31 H 0.062 0.938 32 H 0.083 0.917 33 H 0.048 0.952 34 H 0.074 0.926 35 H 0.078 0.922 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges 6.028 -8.990 -6.208 12.478 hybrid contribution -0.643 -0.212 -0.808 1.054 sum 5.385 -9.202 -7.016 12.763 Atomic orbital electron populations 1.21954 0.95554 1.01083 1.02977 1.22040 0.95372 0.90415 0.99751 1.62422 1.03484 1.09803 1.51351 1.22722 0.97540 0.94551 0.91971 1.19856 0.84219 0.91858 0.96541 0.96630 1.20898 1.02332 1.29898 1.01195 0.90031 1.24952 0.97197 0.94203 0.96440 1.69891 1.16600 1.30941 1.35898 0.87036 0.79962 0.78208 0.85268 1.19900 1.21632 1.18517 1.62115 1.06120 1.10596 1.47306 1.22161 0.98492 0.89917 1.00206 1.22113 0.97394 0.92822 0.94430 1.21587 0.88053 0.95599 0.97077 0.93863 1.21845 0.99382 0.99340 0.99529 0.91872 0.92163 0.92764 0.91402 0.95522 0.94648 0.91008 0.92558 0.97181 0.89571 0.93753 0.91727 0.95239 0.92583 0.92161 0.92800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.44 9.17 37.16 0.34 -2.10 16 2 C 0.05 0.82 5.18 -3.83 -0.02 0.80 16 3 N -0.54 -10.34 4.67 -226.50 -1.06 -11.40 16 4 C 0.06 1.33 3.99 -3.77 -0.02 1.31 16 5 C 0.18 4.46 1.52 -68.81 -0.10 4.36 16 6 H 0.02 0.42 5.72 -51.93 -0.30 0.12 16 7 C -0.50 -14.07 7.59 -34.44 -0.26 -14.33 16 8 H 0.08 2.50 7.80 -52.49 -0.41 2.09 16 9 C 0.07 2.13 5.47 -17.82 -0.10 2.03 16 10 N -0.90 -26.97 13.96 55.43 0.77 -26.19 16 11 Si 0.87 21.61 25.88 -169.99 -4.40 17.21 16 12 H -0.27 -6.59 7.11 56.52 0.40 -6.19 16 13 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 14 H -0.26 -6.45 6.14 56.52 0.35 -6.10 16 15 N -0.54 -11.76 4.78 -236.13 -1.13 -12.89 16 16 C 0.04 0.83 9.36 60.06 0.56 1.39 16 17 C 0.06 1.13 4.90 -3.77 -0.02 1.11 16 18 C 0.09 1.47 2.52 -67.66 -0.17 1.30 16 19 H 0.04 0.78 8.14 -51.93 -0.42 0.36 16 20 C -0.14 -1.91 8.87 37.15 0.33 -1.58 16 21 H 0.06 1.08 6.26 -51.93 -0.33 0.75 16 22 H 0.06 0.96 8.14 -51.92 -0.42 0.54 16 23 H 0.05 0.68 8.14 -51.93 -0.42 0.26 16 24 H 0.07 0.95 6.86 -51.92 -0.36 0.59 16 25 H 0.03 0.41 8.08 -51.93 -0.42 -0.01 16 26 H 0.04 0.82 8.14 -51.93 -0.42 0.40 16 27 H 0.07 1.65 4.20 -51.93 -0.22 1.43 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.01 0.20 8.14 -51.93 -0.42 -0.23 16 30 H 0.09 1.95 6.67 -51.93 -0.35 1.61 16 31 H 0.04 0.77 8.14 -51.93 -0.42 0.35 16 32 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 33 H 0.03 0.56 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.65 8.14 -51.93 -0.42 0.22 16 35 H 0.06 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.05 0.66 6.59 -51.93 -0.34 0.32 16 LS Contribution 270.12 15.07 4.07 4.07 Total: -1.00 -29.55 270.12 -7.33 -36.88 By element: Atomic # 1 Polarization: 4.15 SS G_CDS: -6.13 Total: -1.98 kcal Atomic # 6 Polarization: -6.24 SS G_CDS: 0.55 Total: -5.70 kcal Atomic # 7 Polarization: -49.07 SS G_CDS: -1.41 Total: -50.49 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -4.40 Total: 17.21 kcal Total LS contribution 4.07 Total: 4.07 kcal Total: -29.55 -7.33 -36.88 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218990848.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.745 kcal (2) G-P(sol) polarization free energy of solvation -29.554 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.190 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.327 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.881 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.863 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds