Wall clock time and date at job start Mon Mar 30 2020 02:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.46998 * 2 1 4 4 C 1.46951 * 110.99987 * 66.05046 * 3 2 1 5 5 C 1.53050 * 109.36715 * 183.18548 * 4 3 2 6 6 H 1.09007 * 109.48750 * 61.58319 * 5 4 3 7 7 C 1.50694 * 109.49168 * 181.63023 * 5 4 3 8 8 H 1.08000 * 120.00563 * 119.99976 * 7 5 4 9 9 C 1.37885 * 119.99902 * 299.99813 * 7 5 4 10 10 N 1.31516 * 119.99913 * 0.02562 * 9 7 5 11 11 Si 1.86805 * 119.99854 * 179.72538 * 9 7 5 12 12 H 1.48498 * 109.46909 * 90.00086 * 11 9 7 13 13 H 1.48497 * 109.46701 * 209.99996 * 11 9 7 14 14 H 1.48500 * 109.46867 * 330.00101 * 11 9 7 15 15 N 1.46958 * 109.36462 * 301.59703 * 5 4 3 16 16 C 1.46894 * 111.00441 * 183.18583 * 15 5 4 17 17 C 1.46965 * 110.87890 * 59.31492 * 15 5 4 18 18 H 1.08999 * 109.48421 * 60.65175 * 17 15 5 19 19 C 1.52994 * 109.50475 * 180.70290 * 17 15 5 20 20 C 1.46958 * 110.99621 * 189.84360 * 3 2 1 21 21 H 1.08997 * 109.47248 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99901 * 1 2 3 23 23 H 1.09009 * 109.47085 * 59.99721 * 1 2 3 24 24 H 1.09002 * 109.47060 * 240.00099 * 2 1 3 25 25 H 1.08995 * 109.47118 * 120.00457 * 2 1 3 26 26 H 1.09005 * 109.49196 * 63.21736 * 4 3 2 27 27 H 1.09001 * 109.50569 * 303.16527 * 4 3 2 28 28 H 0.97001 * 119.99646 * 180.02562 * 10 9 7 29 29 H 1.09009 * 109.46856 * 59.99675 * 16 15 5 30 30 H 1.08998 * 109.47747 * 179.97438 * 16 15 5 31 31 H 1.09001 * 109.47055 * 300.00097 * 16 15 5 32 32 H 1.08999 * 109.47525 * 179.90475 * 19 17 15 33 33 H 1.09003 * 109.47568 * 299.90553 * 19 17 15 34 34 H 1.08996 * 109.47562 * 59.90433 * 19 17 15 35 35 H 1.08997 * 109.49474 * 296.78134 * 20 3 2 36 36 H 1.08998 * 109.48936 * 56.85035 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6701 2.0671 1.2538 5 6 2.1266 3.5262 1.1821 6 1 1.6096 4.0293 0.3649 7 6 1.8055 4.2180 2.4818 8 1 2.5985 4.6504 3.0738 9 6 0.4990 4.2989 2.9152 10 7 -0.4667 3.7720 2.1946 11 14 0.1018 5.1497 4.5301 12 1 -0.1529 6.5913 4.2806 13 1 -1.1064 4.5305 5.1317 14 1 1.2489 5.0037 5.4618 15 7 3.5766 3.5722 0.9475 16 6 4.0664 4.9571 0.9475 17 6 3.9262 2.8899 -0.3064 18 1 3.4299 3.3857 -1.1406 19 6 5.4416 2.9412 -0.5105 20 6 3.4697 1.4309 -0.2346 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.1664 1.5714 2.0881 27 1 0.5905 2.0306 1.3993 28 1 -1.3858 3.8293 2.4994 29 1 3.8536 5.4177 1.9123 30 1 5.1421 4.9621 0.7722 31 1 3.5667 5.5191 0.1585 32 1 5.7005 2.4336 -1.4397 33 1 5.7665 3.9804 -0.5615 34 1 5.9377 2.4461 0.3243 35 1 3.9865 0.9280 0.5828 36 1 3.7020 0.9305 -1.1746 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218991132.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:48 Heat of formation + Delta-G solvation = 10.615743 kcal Electronic energy + Delta-G solvation = -15332.288382 eV Core-core repulsion = 13044.435790 eV Total energy + Delta-G solvation = -2287.852592 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.20 seconds Orbital eigenvalues (eV) -38.63874 -35.24473 -33.32783 -31.03565 -30.15665 -27.25598 -25.61085 -25.19005 -22.79439 -21.19540 -20.06577 -18.63284 -16.36086 -15.24768 -15.05295 -14.49121 -14.20612 -13.94824 -13.29071 -13.05204 -12.67878 -12.36736 -11.91698 -11.63941 -11.50411 -11.31884 -11.06002 -10.93146 -10.84115 -10.64503 -10.42854 -10.30091 -10.02726 -9.91445 -9.36314 -8.88791 -8.45630 -7.45643 -7.09530 -6.02546 -4.07112 3.30012 3.36758 3.40818 4.39406 4.73166 5.01347 5.29451 5.51487 5.61014 5.81883 5.82984 5.87617 5.98202 6.07075 6.11510 6.22045 6.28553 6.35306 6.44937 6.48357 6.56551 6.71352 6.78595 6.85859 6.89691 7.03989 7.42573 7.61179 7.79192 7.97853 8.04594 8.19549 8.35859 8.65458 9.00861 9.57857 11.04072 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025125 B = 0.013117 C = 0.009042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.164656 B = 2134.145256 C = 3096.010203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.056 3.944 3 N -0.547 5.547 4 C 0.065 3.935 5 C 0.222 3.778 6 H 0.007 0.993 7 C -0.506 4.506 8 H 0.065 0.935 9 C 0.060 3.940 10 N -0.890 5.890 11 Si 0.896 3.104 12 H -0.281 1.281 13 H -0.287 1.287 14 H -0.274 1.274 15 N -0.538 5.538 16 C 0.037 3.963 17 C 0.080 3.920 18 H 0.036 0.964 19 C -0.142 4.142 20 C 0.068 3.932 21 H 0.046 0.954 22 H 0.065 0.935 23 H 0.058 0.942 24 H 0.058 0.942 25 H 0.022 0.978 26 H 0.013 0.987 27 H 0.113 0.887 28 H 0.261 0.739 29 H 0.073 0.927 30 H 0.047 0.953 31 H 0.010 0.990 32 H 0.049 0.951 33 H 0.055 0.945 34 H 0.058 0.942 35 H 0.030 0.970 36 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.501 -4.059 -4.181 8.013 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.072 4.072 3 N -0.272 5.272 4 C -0.062 4.062 5 C 0.116 3.884 6 H 0.025 0.975 7 C -0.545 4.545 8 H 0.083 0.917 9 C -0.141 4.141 10 N -0.529 5.529 11 Si 0.724 3.276 12 H -0.207 1.207 13 H -0.212 1.212 14 H -0.199 1.199 15 N -0.264 5.264 16 C -0.112 4.112 17 C -0.029 4.029 18 H 0.054 0.946 19 C -0.200 4.200 20 C -0.060 4.060 21 H 0.065 0.935 22 H 0.084 0.916 23 H 0.077 0.923 24 H 0.076 0.924 25 H 0.040 0.960 26 H 0.031 0.969 27 H 0.131 0.869 28 H 0.071 0.929 29 H 0.092 0.908 30 H 0.065 0.935 31 H 0.029 0.971 32 H 0.068 0.932 33 H 0.074 0.926 34 H 0.077 0.923 35 H 0.048 0.952 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 5.283 -4.100 -4.170 7.881 hybrid contribution -0.311 0.406 0.841 0.984 sum 4.972 -3.694 -3.329 7.032 Atomic orbital electron populations 1.21762 0.95096 1.00134 1.03368 1.21933 0.96168 0.90100 0.99018 1.62356 1.12044 1.14129 1.38643 1.22544 1.03609 0.94481 0.85571 1.19256 0.80745 0.92204 0.96238 0.97532 1.21150 0.92478 1.35344 1.05549 0.91735 1.24960 0.96284 0.95598 0.97283 1.69884 0.99997 1.44994 1.37999 0.86520 0.77850 0.79516 0.83677 1.20737 1.21238 1.19875 1.62262 1.18449 1.14719 1.30953 1.22226 0.97595 0.89926 1.01414 1.21553 0.94350 0.94569 0.92432 0.94644 1.21855 0.95881 1.01492 1.00792 1.22045 0.88997 0.95910 0.99095 0.93545 0.91557 0.92304 0.92376 0.95995 0.96852 0.86879 0.92883 0.90811 0.93465 0.97106 0.93159 0.92612 0.92336 0.95174 0.92187 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.54 9.84 37.16 0.37 -2.17 16 2 C 0.06 1.01 5.68 -3.82 -0.02 0.99 16 3 N -0.55 -11.62 4.71 -234.47 -1.10 -12.73 16 4 C 0.06 1.61 4.44 -3.77 -0.02 1.59 16 5 C 0.22 5.77 1.95 -68.81 -0.13 5.64 16 6 H 0.01 0.21 8.14 -51.92 -0.42 -0.22 16 7 C -0.51 -13.92 7.93 -34.44 -0.27 -14.19 16 8 H 0.06 1.77 6.45 -52.49 -0.34 1.43 16 9 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 10 N -0.89 -25.08 11.34 55.43 0.63 -24.46 16 11 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 12 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 13 H -0.29 -6.74 7.11 56.52 0.40 -6.33 16 14 H -0.27 -6.44 7.11 56.52 0.40 -6.04 16 15 N -0.54 -12.11 4.59 -228.14 -1.05 -13.16 16 16 C 0.04 0.75 8.90 60.06 0.53 1.28 16 17 C 0.08 1.56 2.56 -67.66 -0.17 1.39 16 18 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 19 C -0.14 -2.19 8.87 37.15 0.33 -1.86 16 20 C 0.07 1.30 4.89 -3.77 -0.02 1.28 16 21 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 22 H 0.07 1.31 6.49 -51.93 -0.34 0.98 16 23 H 0.06 1.03 8.14 -51.92 -0.42 0.61 16 24 H 0.06 0.92 8.03 -51.93 -0.42 0.50 16 25 H 0.02 0.40 8.12 -51.93 -0.42 -0.03 16 26 H 0.01 0.34 8.14 -51.93 -0.42 -0.08 16 27 H 0.11 3.03 4.31 -51.93 -0.22 2.80 16 28 H 0.26 7.03 8.31 -40.82 -0.34 6.69 16 29 H 0.07 1.57 6.28 -51.92 -0.33 1.25 16 30 H 0.05 0.81 6.04 -51.93 -0.31 0.50 16 31 H 0.01 0.22 8.14 -51.93 -0.42 -0.21 16 32 H 0.05 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.05 0.82 6.28 -51.93 -0.33 0.49 16 34 H 0.06 0.90 8.14 -51.93 -0.42 0.48 16 35 H 0.03 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.06 0.99 8.07 -51.93 -0.42 0.57 16 LS Contribution 273.53 15.07 4.12 4.12 Total: -1.00 -28.38 273.53 -7.99 -36.37 By element: Atomic # 1 Polarization: 4.22 SS G_CDS: -6.06 Total: -1.85 kcal Atomic # 6 Polarization: -4.99 SS G_CDS: 0.50 Total: -4.50 kcal Atomic # 7 Polarization: -48.82 SS G_CDS: -1.52 Total: -50.34 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.38 -7.99 -36.37 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218991132.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.987 kcal (2) G-P(sol) polarization free energy of solvation -28.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.604 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.988 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.372 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.20 seconds