Wall clock time and date at job start Mon Mar 30 2020 02:16:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46900 * 109.46998 * 2 1 4 4 C 1.46951 * 110.99987 * 66.05046 * 3 2 1 5 5 C 1.53050 * 109.36715 * 183.18548 * 4 3 2 6 6 H 1.09007 * 109.48750 * 61.58319 * 5 4 3 7 7 C 1.50694 * 109.49168 * 181.63023 * 5 4 3 8 8 H 1.08000 * 120.00563 * 119.99976 * 7 5 4 9 9 C 1.37885 * 119.99902 * 299.99813 * 7 5 4 10 10 N 1.31516 * 119.99913 * 0.02562 * 9 7 5 11 11 Si 1.86805 * 119.99854 * 179.72538 * 9 7 5 12 12 H 1.48498 * 109.46909 * 90.00086 * 11 9 7 13 13 H 1.48497 * 109.46701 * 209.99996 * 11 9 7 14 14 H 1.48500 * 109.46867 * 330.00101 * 11 9 7 15 15 N 1.46958 * 109.36462 * 301.59703 * 5 4 3 16 16 C 1.46894 * 111.00441 * 183.18583 * 15 5 4 17 17 C 1.46965 * 110.87890 * 59.31492 * 15 5 4 18 18 H 1.08999 * 109.48421 * 60.65175 * 17 15 5 19 19 C 1.52994 * 109.50475 * 180.70290 * 17 15 5 20 20 C 1.46958 * 110.99621 * 189.84360 * 3 2 1 21 21 H 1.08997 * 109.47248 * 179.97438 * 1 2 3 22 22 H 1.09002 * 109.47060 * 299.99901 * 1 2 3 23 23 H 1.09009 * 109.47085 * 59.99721 * 1 2 3 24 24 H 1.09002 * 109.47060 * 240.00099 * 2 1 3 25 25 H 1.08995 * 109.47118 * 120.00457 * 2 1 3 26 26 H 1.09005 * 109.49196 * 63.21736 * 4 3 2 27 27 H 1.09001 * 109.50569 * 303.16527 * 4 3 2 28 28 H 0.97001 * 119.99646 * 180.02562 * 10 9 7 29 29 H 1.09009 * 109.46856 * 59.99675 * 16 15 5 30 30 H 1.08998 * 109.47747 * 179.97438 * 16 15 5 31 31 H 1.09001 * 109.47055 * 300.00097 * 16 15 5 32 32 H 1.08999 * 109.47525 * 179.90475 * 19 17 15 33 33 H 1.09003 * 109.47568 * 299.90553 * 19 17 15 34 34 H 1.08996 * 109.47562 * 59.90433 * 19 17 15 35 35 H 1.08997 * 109.49474 * 296.78134 * 20 3 2 36 36 H 1.08998 * 109.48936 * 56.85035 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6701 2.0671 1.2538 5 6 2.1266 3.5262 1.1821 6 1 1.6096 4.0293 0.3649 7 6 1.8055 4.2180 2.4818 8 1 2.5985 4.6504 3.0738 9 6 0.4990 4.2989 2.9152 10 7 -0.4667 3.7720 2.1946 11 14 0.1018 5.1497 4.5301 12 1 -0.1529 6.5913 4.2806 13 1 -1.1064 4.5305 5.1317 14 1 1.2489 5.0037 5.4618 15 7 3.5766 3.5722 0.9475 16 6 4.0664 4.9571 0.9475 17 6 3.9262 2.8899 -0.3064 18 1 3.4299 3.3857 -1.1406 19 6 5.4416 2.9412 -0.5105 20 6 3.4697 1.4309 -0.2346 21 1 -0.3633 -1.0276 -0.0005 22 1 -0.3633 0.5138 0.8900 23 1 -0.3634 0.5139 -0.8900 24 1 1.8933 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 2.1664 1.5714 2.0881 27 1 0.5905 2.0306 1.3993 28 1 -1.3858 3.8293 2.4994 29 1 3.8536 5.4177 1.9123 30 1 5.1421 4.9621 0.7722 31 1 3.5667 5.5191 0.1585 32 1 5.7005 2.4336 -1.4397 33 1 5.7665 3.9804 -0.5615 34 1 5.9377 2.4461 0.3243 35 1 3.9865 0.9280 0.5828 36 1 3.7020 0.9305 -1.1746 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218991132.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:48 Heat of formation + Delta-G solvation = -9.575570 kcal Electronic energy + Delta-G solvation = -15333.163943 eV Core-core repulsion = 13044.435790 eV Total energy + Delta-G solvation = -2288.728153 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.34276 -36.87256 -35.28666 -32.77379 -31.75494 -28.96603 -27.19614 -27.13377 -24.37947 -23.01930 -21.64606 -20.37194 -18.42432 -17.09012 -16.71004 -16.12223 -15.91394 -15.62254 -15.05958 -14.82605 -14.23323 -13.92987 -13.63046 -13.12512 -13.00953 -12.93871 -12.85208 -12.55545 -12.44115 -12.40686 -12.00892 -11.98353 -11.87414 -11.68423 -11.08953 -10.84679 -10.53531 -9.15211 -8.92867 -8.12524 -6.25382 1.41297 1.42235 1.53091 2.40847 3.06684 3.24405 3.37854 4.04261 4.15488 4.32750 4.38008 4.40191 4.55487 4.63405 4.67337 4.72061 4.78705 4.82340 4.92889 5.00737 5.07379 5.09956 5.15104 5.20650 5.35146 5.37053 5.50847 5.66366 5.70416 6.13493 6.26993 6.33686 6.52763 6.77029 6.89921 7.43793 8.93147 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.025125 B = 0.013117 C = 0.009042 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1114.164656 B = 2134.145256 C = 3096.010203 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.054 3.946 3 N -0.561 5.561 4 C 0.083 3.917 5 C 0.228 3.772 6 H -0.040 1.040 7 C -0.526 4.526 8 H 0.060 0.940 9 C 0.014 3.986 10 N -0.915 5.915 11 Si 0.961 3.039 12 H -0.275 1.275 13 H -0.282 1.282 14 H -0.269 1.269 15 N -0.547 5.547 16 C 0.040 3.960 17 C 0.074 3.926 18 H 0.019 0.981 19 C -0.131 4.131 20 C 0.068 3.932 21 H 0.080 0.920 22 H 0.032 0.968 23 H 0.052 0.948 24 H 0.091 0.909 25 H 0.022 0.978 26 H -0.008 1.008 27 H 0.088 0.912 28 H 0.263 0.737 29 H 0.057 0.943 30 H 0.084 0.916 31 H 0.001 0.999 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.060 0.940 35 H 0.028 0.972 36 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.859 -4.818 -4.573 9.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.073 4.073 3 N -0.286 5.286 4 C -0.045 4.045 5 C 0.121 3.879 6 H -0.023 1.023 7 C -0.565 4.565 8 H 0.078 0.922 9 C -0.185 4.185 10 N -0.554 5.554 11 Si 0.787 3.213 12 H -0.201 1.201 13 H -0.207 1.207 14 H -0.194 1.194 15 N -0.273 5.273 16 C -0.108 4.108 17 C -0.035 4.035 18 H 0.037 0.963 19 C -0.189 4.189 20 C -0.061 4.061 21 H 0.099 0.901 22 H 0.051 0.949 23 H 0.071 0.929 24 H 0.109 0.891 25 H 0.040 0.960 26 H 0.010 0.990 27 H 0.106 0.894 28 H 0.072 0.928 29 H 0.076 0.924 30 H 0.102 0.898 31 H 0.020 0.980 32 H 0.098 0.902 33 H 0.082 0.918 34 H 0.079 0.921 35 H 0.046 0.954 36 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges 6.663 -4.864 -4.577 9.434 hybrid contribution -0.720 0.618 0.891 1.302 sum 5.943 -4.246 -3.685 8.181 Atomic orbital electron populations 1.21711 0.94962 1.01742 1.01331 1.22071 0.96331 0.88417 1.00525 1.62316 1.13942 1.16095 1.36276 1.22105 1.01711 0.94103 0.86600 1.19012 0.82689 0.92299 0.93934 1.02289 1.21408 0.92789 1.35987 1.06301 0.92171 1.25746 0.96092 0.96150 1.00515 1.70022 1.00234 1.45655 1.39472 0.85506 0.77677 0.78524 0.79621 1.20104 1.20716 1.19369 1.62257 1.15882 1.16027 1.33106 1.22236 0.99623 0.88755 1.00212 1.21767 0.97233 0.94298 0.90218 0.96335 1.21779 0.92157 1.02544 1.02405 1.22175 0.87345 0.95916 1.00620 0.90090 0.94933 0.92912 0.89058 0.95972 0.98995 0.89361 0.92815 0.92416 0.89779 0.98000 0.90174 0.91848 0.92093 0.95411 0.88729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.78 9.84 71.98 0.71 -4.07 16 2 C 0.05 1.87 5.68 86.30 0.49 2.36 16 3 N -0.56 -23.71 4.71 -895.73 -4.22 -27.93 16 4 C 0.08 4.24 4.44 86.31 0.38 4.62 16 5 C 0.23 12.28 1.95 44.17 0.09 12.36 16 6 H -0.04 -2.50 8.14 -2.38 -0.02 -2.52 16 7 C -0.53 -29.80 7.93 25.60 0.20 -29.60 16 8 H 0.06 3.38 6.45 -2.91 -0.02 3.36 16 9 C 0.01 0.80 5.30 84.66 0.45 1.25 16 10 N -0.91 -53.24 11.34 21.45 0.24 -52.99 16 11 Si 0.96 44.12 29.54 68.60 2.03 46.15 16 12 H -0.28 -12.31 7.11 99.48 0.71 -11.61 16 13 H -0.28 -12.62 7.11 99.48 0.71 -11.92 16 14 H -0.27 -12.06 7.11 99.48 0.71 -11.35 16 15 N -0.55 -24.72 4.59 -875.71 -4.02 -28.74 16 16 C 0.04 1.61 8.90 127.69 1.14 2.75 16 17 C 0.07 2.77 2.56 44.92 0.12 2.89 16 18 H 0.02 0.76 8.14 -2.39 -0.02 0.75 16 19 C -0.13 -3.60 8.87 71.98 0.64 -2.97 16 20 C 0.07 2.44 4.89 86.31 0.42 2.87 16 21 H 0.08 2.17 8.14 -2.39 -0.02 2.15 16 22 H 0.03 1.31 6.49 -2.39 -0.02 1.30 16 23 H 0.05 1.83 8.14 -2.38 -0.02 1.81 16 24 H 0.09 2.57 8.03 -2.39 -0.02 2.55 16 25 H 0.02 0.77 8.12 -2.39 -0.02 0.75 16 26 H -0.01 -0.44 8.14 -2.38 -0.02 -0.46 16 27 H 0.09 4.95 4.31 -2.39 -0.01 4.94 16 28 H 0.26 14.49 8.31 -92.71 -0.77 13.72 16 29 H 0.06 2.49 6.28 -2.38 -0.01 2.47 16 30 H 0.08 2.74 6.04 -2.39 -0.01 2.72 16 31 H 0.00 0.06 8.14 -2.39 -0.02 0.04 16 32 H 0.08 1.75 8.14 -2.39 -0.02 1.73 16 33 H 0.06 1.64 6.28 -2.39 -0.01 1.63 16 34 H 0.06 1.67 8.14 -2.39 -0.02 1.65 16 35 H 0.03 1.02 8.14 -2.39 -0.02 1.01 16 36 H 0.09 2.78 8.07 -2.39 -0.02 2.76 16 Total: -1.00 -63.27 273.53 -0.31 -63.58 By element: Atomic # 1 Polarization: 6.44 SS G_CDS: 1.03 Total: 7.47 kcal Atomic # 6 Polarization: -12.17 SS G_CDS: 4.63 Total: -7.54 kcal Atomic # 7 Polarization: -101.66 SS G_CDS: -8.00 Total: -109.66 kcal Atomic # 14 Polarization: 44.12 SS G_CDS: 2.03 Total: 46.15 kcal Total: -63.27 -0.31 -63.58 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218991132.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.006 kcal (2) G-P(sol) polarization free energy of solvation -63.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.265 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.311 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.582 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds