Wall clock time and date at job start Mon Mar 30 2020 02:16:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47242 * 2 1 4 4 C 1.46953 * 111.00189 * 189.84074 * 3 2 1 5 5 C 1.53054 * 109.36257 * 176.81117 * 4 3 2 6 6 H 1.08997 * 109.48619 * 178.37489 * 5 4 3 7 7 C 1.52999 * 109.49250 * 298.41627 * 5 4 3 8 8 N 1.46955 * 109.37806 * 58.39649 * 5 4 3 9 9 C 1.46905 * 111.01598 * 176.83201 * 8 5 4 10 10 C 1.46954 * 110.87931 * 300.70701 * 8 5 4 11 11 H 1.09002 * 109.49240 * 299.30747 * 10 8 5 12 12 C 1.50702 * 109.48795 * 179.26777 * 10 8 5 13 13 H 1.07998 * 120.00350 * 335.25412 * 12 10 8 14 14 C 1.37880 * 120.00185 * 155.24990 * 12 10 8 15 15 N 1.31519 * 119.99853 * 355.22798 * 14 12 10 16 16 Si 1.86795 * 120.00020 * 175.22902 * 14 12 10 17 17 H 1.48499 * 109.47520 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.46875 * 239.99893 * 16 14 12 19 19 H 1.48498 * 109.47231 * 120.00507 * 16 14 12 20 20 C 1.46967 * 110.99484 * 66.04470 * 3 2 1 21 21 H 1.09007 * 109.47104 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47324 * 299.99608 * 1 2 3 23 23 H 1.09005 * 109.47002 * 60.00144 * 1 2 3 24 24 H 1.09004 * 109.47463 * 240.00190 * 2 1 3 25 25 H 1.09001 * 109.46906 * 120.00617 * 2 1 3 26 26 H 1.08996 * 109.49339 * 296.78480 * 4 3 2 27 27 H 1.09002 * 109.48364 * 56.85235 * 4 3 2 28 28 H 1.09006 * 109.47092 * 59.99686 * 7 5 4 29 29 H 1.08997 * 109.47350 * 179.97438 * 7 5 4 30 30 H 1.09005 * 109.46967 * 300.00423 * 7 5 4 31 31 H 1.08997 * 109.47190 * 183.81388 * 9 8 5 32 32 H 1.09000 * 109.46788 * 303.81230 * 9 8 5 33 33 H 1.08994 * 109.47242 * 63.80504 * 9 8 5 34 34 H 0.97000 * 120.00001 * 5.25787 * 15 14 12 35 35 H 1.08998 * 109.48838 * 63.22330 * 20 3 2 36 36 H 1.09000 * 109.50420 * 303.16398 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4697 1.4309 -0.2345 5 6 3.9261 2.8901 -0.3063 6 1 5.0057 2.9266 -0.4513 7 6 3.2299 3.5857 -1.4777 8 7 3.5764 3.5726 0.9473 9 6 4.0655 4.9578 0.9472 10 6 2.1265 3.5262 1.1821 11 1 1.6094 4.0293 0.3649 12 6 1.8052 4.2180 2.4818 13 1 2.5568 4.2930 3.2538 14 6 0.5518 4.7552 2.6855 15 7 -0.3330 4.7474 1.7125 16 14 0.1104 5.4940 4.3434 17 1 1.2719 5.3791 5.2616 18 1 -1.0483 4.7640 4.9179 19 1 -0.2436 6.9255 4.1689 20 6 1.6700 2.0671 1.2539 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.9864 0.9280 0.5829 27 1 3.7019 0.9306 -1.1746 28 1 2.1502 3.5496 -1.3320 29 1 3.5548 4.6249 -1.5283 30 1 3.4882 3.0782 -2.4072 31 1 3.8529 5.4183 1.9119 32 1 5.1412 4.9632 0.7712 33 1 3.5656 5.5196 0.1582 34 1 -0.1316 4.2967 0.8774 35 1 2.1663 1.5714 2.0882 36 1 0.5903 2.0306 1.3992 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218991196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:50 Heat of formation + Delta-G solvation = 6.706744 kcal Electronic energy + Delta-G solvation = -15498.128760 eV Core-core repulsion = 13210.106661 eV Total energy + Delta-G solvation = -2288.022099 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.01900 -35.40260 -33.36419 -30.90571 -29.96442 -27.51899 -25.59205 -24.72328 -23.09168 -21.68304 -20.72030 -18.09333 -16.75374 -15.34163 -14.88628 -14.62453 -14.05733 -13.75942 -13.65169 -13.47673 -13.02273 -12.15818 -11.92513 -11.64753 -11.51974 -11.45890 -11.12311 -10.85203 -10.81508 -10.80092 -10.49156 -10.23637 -10.14526 -10.03304 -9.56569 -8.53994 -8.37844 -7.66487 -7.14821 -6.34075 -4.07361 3.44021 3.46592 3.61385 4.47591 4.57287 4.97185 5.34480 5.40736 5.49025 5.63956 5.75599 5.79533 5.85525 6.00326 6.10256 6.11735 6.25960 6.30149 6.33900 6.38617 6.53942 6.57781 6.60370 6.64724 6.85682 6.87611 7.10667 7.41364 7.64461 7.76818 7.97003 8.08914 8.44079 8.63662 8.90088 9.65643 11.02171 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027162 B = 0.012743 C = 0.009735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.616437 B = 2196.671456 C = 2875.384032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.053 3.947 3 N -0.543 5.543 4 C 0.069 3.931 5 C 0.079 3.921 6 H 0.067 0.933 7 C -0.173 4.173 8 N -0.534 5.534 9 C 0.044 3.956 10 C 0.202 3.798 11 H 0.019 0.981 12 C -0.586 4.586 13 H 0.056 0.944 14 C 0.021 3.979 15 N -0.911 5.911 16 Si 1.073 2.927 17 H -0.289 1.289 18 H -0.288 1.288 19 H -0.288 1.288 20 C 0.069 3.931 21 H 0.050 0.950 22 H 0.059 0.941 23 H 0.059 0.941 24 H 0.062 0.938 25 H 0.024 0.976 26 H 0.031 0.969 27 H 0.064 0.936 28 H 0.072 0.928 29 H 0.045 0.955 30 H 0.044 0.956 31 H 0.076 0.924 32 H 0.039 0.961 33 H 0.015 0.985 34 H 0.272 0.728 35 H 0.024 0.976 36 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.034 -5.644 -3.774 8.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.076 4.076 3 N -0.268 5.268 4 C -0.060 4.060 5 C -0.031 4.031 6 H 0.085 0.915 7 C -0.232 4.232 8 N -0.258 5.258 9 C -0.105 4.105 10 C 0.095 3.905 11 H 0.037 0.963 12 C -0.626 4.626 13 H 0.074 0.926 14 C -0.184 4.184 15 N -0.547 5.547 16 Si 0.901 3.099 17 H -0.215 1.215 18 H -0.214 1.214 19 H -0.214 1.214 20 C -0.059 4.059 21 H 0.069 0.931 22 H 0.078 0.922 23 H 0.078 0.922 24 H 0.080 0.920 25 H 0.042 0.958 26 H 0.049 0.951 27 H 0.082 0.918 28 H 0.091 0.909 29 H 0.064 0.936 30 H 0.064 0.936 31 H 0.095 0.905 32 H 0.058 0.942 33 H 0.033 0.967 34 H 0.084 0.916 35 H 0.042 0.958 36 H 0.090 0.910 Dipole moment (debyes) X Y Z Total from point charges 3.833 -4.845 -2.947 6.845 hybrid contribution 1.212 -0.902 -0.860 1.738 sum 5.045 -5.747 -3.807 8.542 Atomic orbital electron populations 1.21773 0.95194 1.00556 1.02953 1.21986 0.96039 0.90103 0.99441 1.62347 1.12679 1.14162 1.37632 1.22021 0.88503 0.96177 0.99266 1.21687 0.97922 0.93569 0.89885 0.91453 1.22304 1.03312 0.99528 0.98073 1.62418 1.18057 1.15285 1.30084 1.22093 0.96821 0.89757 1.01799 1.19479 0.82649 0.91225 0.97190 0.96324 1.21911 1.00034 1.39715 1.00898 0.92550 1.25812 0.93016 0.95696 1.03847 1.70722 1.37809 1.40907 1.05284 0.83495 0.75466 0.76435 0.74478 1.21463 1.21414 1.21422 1.22554 1.00155 0.96168 0.86986 0.93109 0.92193 0.92151 0.91974 0.95750 0.95080 0.91807 0.90881 0.93619 0.93642 0.90529 0.94173 0.96688 0.91636 0.95761 0.91026 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.34 9.84 37.16 0.37 -1.97 16 2 C 0.05 0.87 5.68 -3.83 -0.02 0.85 16 3 N -0.54 -10.67 4.03 -234.46 -0.94 -11.61 16 4 C 0.07 1.24 5.04 -3.77 -0.02 1.22 16 5 C 0.08 1.49 2.97 -67.65 -0.20 1.29 16 6 H 0.07 1.15 8.13 -51.93 -0.42 0.73 16 7 C -0.17 -3.19 8.37 37.16 0.31 -2.88 16 8 N -0.53 -11.90 4.73 -228.14 -1.08 -12.98 16 9 C 0.04 0.91 8.84 60.07 0.53 1.44 16 10 C 0.20 5.04 1.29 -68.81 -0.09 4.95 16 11 H 0.02 0.53 4.88 -51.93 -0.25 0.28 16 12 C -0.59 -16.12 7.11 -34.44 -0.24 -16.37 16 13 H 0.06 1.59 7.52 -52.49 -0.39 1.20 16 14 C 0.02 0.59 5.45 -17.82 -0.10 0.50 16 15 N -0.91 -26.90 13.63 55.43 0.76 -26.15 16 16 Si 1.07 25.02 29.91 -169.99 -5.08 19.94 16 17 H -0.29 -6.46 7.11 56.52 0.40 -6.06 16 18 H -0.29 -6.61 7.11 56.52 0.40 -6.20 16 19 H -0.29 -6.62 7.11 56.52 0.40 -6.22 16 20 C 0.07 1.60 4.67 -3.76 -0.02 1.59 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.24 16 22 H 0.06 1.07 6.49 -51.93 -0.34 0.73 16 23 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 24 H 0.06 0.91 8.03 -51.93 -0.42 0.49 16 25 H 0.02 0.40 8.12 -51.93 -0.42 -0.02 16 26 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 27 H 0.06 1.00 8.07 -51.93 -0.42 0.58 16 28 H 0.07 1.56 5.94 -51.93 -0.31 1.25 16 29 H 0.04 0.83 6.57 -51.93 -0.34 0.48 16 30 H 0.04 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 1.71 6.82 -51.93 -0.35 1.36 16 32 H 0.04 0.71 8.13 -51.93 -0.42 0.29 16 33 H 0.01 0.31 6.59 -51.93 -0.34 -0.03 16 34 H 0.27 8.11 6.66 -40.82 -0.27 7.83 16 35 H 0.02 0.59 8.14 -51.93 -0.42 0.16 16 36 H 0.07 1.78 6.34 -51.93 -0.33 1.45 16 LS Contribution 271.86 15.07 4.10 4.10 Total: -1.00 -28.85 271.86 -7.68 -36.53 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -5.94 Total: -0.45 kcal Atomic # 6 Polarization: -9.90 SS G_CDS: 0.52 Total: -9.38 kcal Atomic # 7 Polarization: -49.47 SS G_CDS: -1.27 Total: -50.74 kcal Atomic # 14 Polarization: 25.02 SS G_CDS: -5.08 Total: 19.94 kcal Total LS contribution 4.10 Total: 4.10 kcal Total: -28.85 -7.68 -36.53 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218991196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.238 kcal (2) G-P(sol) polarization free energy of solvation -28.852 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.386 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.679 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.707 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds