Wall clock time and date at job start Mon Mar 30 2020 02:16:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46899 * 109.47242 * 2 1 4 4 C 1.46953 * 111.00189 * 189.84074 * 3 2 1 5 5 C 1.53054 * 109.36257 * 176.81117 * 4 3 2 6 6 H 1.08997 * 109.48619 * 178.37489 * 5 4 3 7 7 C 1.52999 * 109.49250 * 298.41627 * 5 4 3 8 8 N 1.46955 * 109.37806 * 58.39649 * 5 4 3 9 9 C 1.46905 * 111.01598 * 176.83201 * 8 5 4 10 10 C 1.46954 * 110.87931 * 300.70701 * 8 5 4 11 11 H 1.09002 * 109.49240 * 299.30747 * 10 8 5 12 12 C 1.50702 * 109.48795 * 179.26777 * 10 8 5 13 13 H 1.07998 * 120.00350 * 335.25412 * 12 10 8 14 14 C 1.37880 * 120.00185 * 155.24990 * 12 10 8 15 15 N 1.31519 * 119.99853 * 355.22798 * 14 12 10 16 16 Si 1.86795 * 120.00020 * 175.22902 * 14 12 10 17 17 H 1.48499 * 109.47520 * 359.97438 * 16 14 12 18 18 H 1.48508 * 109.46875 * 239.99893 * 16 14 12 19 19 H 1.48498 * 109.47231 * 120.00507 * 16 14 12 20 20 C 1.46967 * 110.99484 * 66.04470 * 3 2 1 21 21 H 1.09007 * 109.47104 * 179.97438 * 1 2 3 22 22 H 1.08995 * 109.47324 * 299.99608 * 1 2 3 23 23 H 1.09005 * 109.47002 * 60.00144 * 1 2 3 24 24 H 1.09004 * 109.47463 * 240.00190 * 2 1 3 25 25 H 1.09001 * 109.46906 * 120.00617 * 2 1 3 26 26 H 1.08996 * 109.49339 * 296.78480 * 4 3 2 27 27 H 1.09002 * 109.48364 * 56.85235 * 4 3 2 28 28 H 1.09006 * 109.47092 * 59.99686 * 7 5 4 29 29 H 1.08997 * 109.47350 * 179.97438 * 7 5 4 30 30 H 1.09005 * 109.46967 * 300.00423 * 7 5 4 31 31 H 1.08997 * 109.47190 * 183.81388 * 9 8 5 32 32 H 1.09000 * 109.46788 * 303.81230 * 9 8 5 33 33 H 1.08994 * 109.47242 * 63.80504 * 9 8 5 34 34 H 0.97000 * 120.00001 * 5.25787 * 15 14 12 35 35 H 1.08998 * 109.48838 * 63.22330 * 20 3 2 36 36 H 1.09000 * 109.50420 * 303.16398 * 20 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 3.4697 1.4309 -0.2345 5 6 3.9261 2.8901 -0.3063 6 1 5.0057 2.9266 -0.4513 7 6 3.2299 3.5857 -1.4777 8 7 3.5764 3.5726 0.9473 9 6 4.0655 4.9578 0.9472 10 6 2.1265 3.5262 1.1821 11 1 1.6094 4.0293 0.3649 12 6 1.8052 4.2180 2.4818 13 1 2.5568 4.2930 3.2538 14 6 0.5518 4.7552 2.6855 15 7 -0.3330 4.7474 1.7125 16 14 0.1104 5.4940 4.3434 17 1 1.2719 5.3791 5.2616 18 1 -1.0483 4.7640 4.9179 19 1 -0.2436 6.9255 4.1689 20 6 1.6700 2.0671 1.2539 21 1 -0.3634 -1.0277 -0.0005 22 1 -0.3634 0.5137 0.8900 23 1 -0.3633 0.5138 -0.8900 24 1 1.8934 -0.5138 -0.8900 25 1 1.8933 -0.5139 0.8899 26 1 3.9864 0.9280 0.5829 27 1 3.7019 0.9306 -1.1746 28 1 2.1502 3.5496 -1.3320 29 1 3.5548 4.6249 -1.5283 30 1 3.4882 3.0782 -2.4072 31 1 3.8529 5.4183 1.9119 32 1 5.1412 4.9632 0.7712 33 1 3.5656 5.5196 0.1582 34 1 -0.1316 4.2967 0.8774 35 1 2.1663 1.5714 2.0882 36 1 0.5903 2.0306 1.3992 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218991196.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:49 Heat of formation + Delta-G solvation = -13.498609 kcal Electronic energy + Delta-G solvation = -15499.004930 eV Core-core repulsion = 13210.106661 eV Total energy + Delta-G solvation = -2288.898269 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.67867 -36.98020 -35.36682 -32.52598 -31.61915 -29.17140 -27.18230 -26.73047 -24.66898 -23.52604 -22.21434 -19.82850 -18.71474 -16.97192 -16.67341 -16.15979 -15.78175 -15.56493 -15.21082 -15.09438 -14.56615 -13.79552 -13.75483 -13.30191 -13.10598 -12.89560 -12.75869 -12.70098 -12.49784 -12.32103 -11.98293 -11.95746 -11.86886 -11.80297 -11.21450 -10.56909 -10.48736 -9.24601 -8.96132 -8.55835 -6.30917 1.52759 1.60756 1.78087 2.55361 3.00229 3.22565 3.35006 3.95595 4.05403 4.23690 4.29393 4.31686 4.52683 4.54336 4.54861 4.62004 4.66376 4.78740 4.83394 4.88081 4.92082 5.01433 5.02812 5.11295 5.19661 5.26097 5.35098 5.55473 5.88239 6.01758 6.17557 6.27446 6.52027 6.53324 6.80215 7.49834 8.78127 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027162 B = 0.012743 C = 0.009735 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1030.616437 B = 2196.671456 C = 2875.384032 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.051 3.949 3 N -0.551 5.551 4 C 0.068 3.932 5 C 0.073 3.927 6 H 0.097 0.903 7 C -0.163 4.163 8 N -0.546 5.546 9 C 0.048 3.952 10 C 0.207 3.793 11 H -0.013 1.013 12 C -0.593 4.593 13 H 0.044 0.956 14 C -0.026 4.026 15 N -0.934 5.934 16 Si 1.116 2.884 17 H -0.274 1.274 18 H -0.280 1.280 19 H -0.281 1.281 20 C 0.088 3.912 21 H 0.082 0.918 22 H 0.029 0.971 23 H 0.053 0.947 24 H 0.094 0.906 25 H 0.026 0.974 26 H 0.029 0.971 27 H 0.100 0.900 28 H 0.037 0.963 29 H 0.043 0.957 30 H 0.075 0.925 31 H 0.053 0.947 32 H 0.076 0.924 33 H 0.005 0.995 34 H 0.258 0.742 35 H 0.007 0.993 36 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.393 -6.728 -4.360 10.254 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.076 4.076 3 N -0.276 5.276 4 C -0.060 4.060 5 C -0.036 4.036 6 H 0.115 0.885 7 C -0.222 4.222 8 N -0.270 5.270 9 C -0.100 4.100 10 C 0.100 3.900 11 H 0.004 0.996 12 C -0.632 4.632 13 H 0.062 0.938 14 C -0.225 4.225 15 N -0.572 5.572 16 Si 0.939 3.061 17 H -0.199 1.199 18 H -0.206 1.206 19 H -0.206 1.206 20 C -0.041 4.041 21 H 0.101 0.899 22 H 0.049 0.951 23 H 0.072 0.928 24 H 0.112 0.888 25 H 0.044 0.956 26 H 0.047 0.953 27 H 0.118 0.882 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.072 0.928 32 H 0.094 0.906 33 H 0.024 0.976 34 H 0.068 0.932 35 H 0.025 0.975 36 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 5.218 -5.945 -3.551 8.671 hybrid contribution 0.867 -0.608 -0.744 1.294 sum 6.084 -6.553 -4.295 9.920 Atomic orbital electron populations 1.21746 0.95067 1.02089 1.01144 1.22122 0.96194 0.88368 1.00962 1.62297 1.14230 1.16056 1.35039 1.22150 0.87074 0.95811 1.00947 1.21917 0.99624 0.93774 0.88276 0.88530 1.22179 1.00795 0.99848 0.99336 1.62369 1.15851 1.16126 1.32660 1.22060 0.98807 0.88984 1.00179 1.19245 0.84313 0.91658 0.94828 0.99551 1.22157 0.99724 1.39649 1.01653 0.93753 1.27136 0.93151 0.95964 1.06199 1.70843 1.38517 1.42373 1.05444 0.82934 0.75943 0.76118 0.71104 1.19908 1.20635 1.20642 1.22078 0.98170 0.95516 0.88314 0.89877 0.95150 0.92773 0.88778 0.95601 0.95310 0.88175 0.94429 0.93843 0.90578 0.92826 0.90589 0.97634 0.93168 0.97450 0.93683 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.41 9.84 71.98 0.71 -3.70 16 2 C 0.05 1.59 5.68 86.30 0.49 2.08 16 3 N -0.55 -21.11 4.03 -895.70 -3.61 -24.72 16 4 C 0.07 2.27 5.04 86.31 0.43 2.70 16 5 C 0.07 2.59 2.97 44.92 0.13 2.72 16 6 H 0.10 2.91 8.13 -2.39 -0.02 2.89 16 7 C -0.16 -5.72 8.37 71.98 0.60 -5.12 16 8 N -0.55 -24.04 4.73 -875.71 -4.14 -28.18 16 9 C 0.05 1.98 8.84 127.69 1.13 3.11 16 10 C 0.21 10.64 1.29 44.18 0.06 10.70 16 11 H -0.01 -0.75 4.88 -2.39 -0.01 -0.76 16 12 C -0.59 -33.50 7.11 25.60 0.18 -33.32 16 13 H 0.04 2.56 7.52 -2.91 -0.02 2.54 16 14 C -0.03 -1.46 5.45 84.65 0.46 -1.00 16 15 N -0.93 -57.05 13.63 21.45 0.29 -56.75 16 16 Si 1.12 50.91 29.91 68.60 2.05 52.96 16 17 H -0.27 -11.72 7.11 99.48 0.71 -11.01 16 18 H -0.28 -12.40 7.11 99.48 0.71 -11.70 16 19 H -0.28 -12.41 7.11 99.48 0.71 -11.70 16 20 C 0.09 4.18 4.67 86.31 0.40 4.58 16 21 H 0.08 2.00 8.14 -2.38 -0.02 1.98 16 22 H 0.03 1.09 6.49 -2.39 -0.02 1.08 16 23 H 0.05 1.71 8.14 -2.38 -0.02 1.69 16 24 H 0.09 2.37 8.03 -2.38 -0.02 2.35 16 25 H 0.03 0.81 8.12 -2.39 -0.02 0.79 16 26 H 0.03 0.98 8.14 -2.39 -0.02 0.96 16 27 H 0.10 2.65 8.07 -2.39 -0.02 2.63 16 28 H 0.04 1.59 5.94 -2.38 -0.01 1.57 16 29 H 0.04 1.51 6.57 -2.39 -0.02 1.50 16 30 H 0.08 2.17 8.14 -2.38 -0.02 2.16 16 31 H 0.05 2.42 6.82 -2.39 -0.02 2.40 16 32 H 0.08 2.55 8.13 -2.39 -0.02 2.53 16 33 H 0.01 0.22 6.59 -2.39 -0.02 0.20 16 34 H 0.26 16.15 6.66 -92.71 -0.62 15.53 16 35 H 0.01 0.36 8.14 -2.39 -0.02 0.34 16 36 H 0.04 2.35 6.34 -2.39 -0.02 2.33 16 Total: -1.00 -64.04 271.86 0.38 -63.65 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.18 Total: 10.30 kcal Atomic # 6 Polarization: -21.86 SS G_CDS: 4.60 Total: -17.26 kcal Atomic # 7 Polarization: -102.20 SS G_CDS: -7.45 Total: -109.65 kcal Atomic # 14 Polarization: 50.91 SS G_CDS: 2.05 Total: 52.96 kcal Total: -64.04 0.38 -63.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218991196.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.156 kcal (2) G-P(sol) polarization free energy of solvation -64.037 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.382 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.499 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds