Wall clock time and date at job start Mon Mar 30 2020 02:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.46630 * 2 1 4 4 C 1.46957 * 111.00475 * 46.19993 * 3 2 1 5 5 C 1.53050 * 109.36366 * 183.18623 * 4 3 2 6 6 H 1.09004 * 109.48583 * 181.62874 * 5 4 3 7 7 C 1.53003 * 109.50488 * 61.58044 * 5 4 3 8 8 N 1.46948 * 109.36854 * 301.59826 * 5 4 3 9 9 C 1.46900 * 111.00128 * 183.18881 * 8 5 4 10 10 C 1.46957 * 110.88222 * 59.32006 * 8 5 4 11 11 C 1.46961 * 110.99822 * 170.00178 * 3 2 1 12 12 H 1.08998 * 109.50390 * 296.78649 * 11 3 2 13 13 C 1.50695 * 109.48917 * 56.84151 * 11 3 2 14 14 H 1.08000 * 120.00129 * 5.58367 * 13 11 3 15 15 C 1.37883 * 120.00234 * 185.58353 * 13 11 3 16 16 N 1.31508 * 120.00319 * 198.03795 * 15 13 11 17 17 Si 1.86807 * 119.99539 * 18.03616 * 15 13 11 18 18 H 1.48506 * 109.46819 * 179.97438 * 17 15 13 19 19 H 1.48491 * 109.47363 * 300.00106 * 17 15 13 20 20 H 1.48508 * 109.47058 * 60.00336 * 17 15 13 21 21 H 1.09004 * 109.47558 * 299.99803 * 1 2 3 22 22 H 1.08996 * 109.47721 * 60.00246 * 1 2 3 23 23 H 1.09007 * 109.47184 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47461 * 240.00230 * 2 1 3 25 25 H 1.08998 * 109.47406 * 119.99321 * 2 1 3 26 26 H 1.08997 * 109.48831 * 63.21923 * 4 3 2 27 27 H 1.08995 * 109.48647 * 303.15547 * 4 3 2 28 28 H 1.09000 * 109.46937 * 300.09260 * 7 5 4 29 29 H 1.09000 * 109.47160 * 60.09441 * 7 5 4 30 30 H 1.09005 * 109.46756 * 180.09687 * 7 5 4 31 31 H 1.08997 * 109.47140 * 292.24237 * 9 8 5 32 32 H 1.08991 * 109.46791 * 52.24966 * 9 8 5 33 33 H 1.09004 * 109.46724 * 172.24885 * 9 8 5 34 34 H 1.08999 * 109.49529 * 180.71294 * 10 8 5 35 35 H 1.09006 * 109.49015 * 60.64408 * 10 8 5 36 36 H 0.97006 * 120.00161 * 354.68640 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.2998 2.1981 0.9902 5 6 1.7824 3.6480 0.9036 6 1 1.2707 4.2471 1.6568 7 6 1.4756 4.2063 -0.4875 8 7 3.2317 3.6942 1.1418 9 6 3.7213 5.0792 1.1417 10 6 3.9515 2.8812 0.1517 11 6 3.4690 1.4313 0.2382 12 1 3.6877 1.0338 1.2293 13 6 4.1763 0.6030 -0.8032 14 1 3.6170 0.1671 -1.6178 15 6 5.5375 0.4015 -0.7160 16 7 6.2116 -0.0007 -1.7711 17 14 6.4241 0.6998 0.9010 18 1 7.8714 0.4129 0.7321 19 1 6.2441 2.1158 1.3103 20 1 5.8616 -0.1930 1.9460 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 1.4936 1.8095 1.9899 27 1 0.2300 2.1581 0.7852 28 1 1.9868 3.6065 -1.2406 29 1 0.4005 4.1718 -0.6639 30 1 1.8211 5.2383 -0.5491 31 1 3.6369 5.4944 0.1375 32 1 3.1252 5.6753 1.8326 33 1 4.7652 5.0955 1.4551 34 1 5.0213 2.9212 0.3566 35 1 3.7577 3.2698 -0.8482 36 1 5.7420 -0.2296 -2.5885 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218993705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:38 Heat of formation + Delta-G solvation = 15.154837 kcal Electronic energy + Delta-G solvation = -15544.501059 eV Core-core repulsion = 13256.845296 eV Total energy + Delta-G solvation = -2287.655763 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -39.13973 -35.48165 -33.14864 -30.99580 -30.47727 -27.46048 -26.29629 -24.46350 -23.54915 -21.03280 -20.36693 -17.94702 -17.51384 -15.83789 -15.00646 -14.36586 -14.04054 -13.81940 -13.65564 -13.60283 -13.08912 -12.43489 -11.88788 -11.84929 -11.71849 -11.55377 -11.25752 -11.05332 -10.89222 -10.65165 -10.49749 -10.14507 -10.07767 -9.90276 -9.56214 -8.80308 -8.23297 -7.68909 -7.23574 -6.46633 -4.05801 3.41061 3.46041 3.63101 4.48422 4.57029 4.82728 5.26553 5.36761 5.53098 5.62179 5.67310 5.75447 5.85796 5.87564 5.93614 6.06078 6.13309 6.21722 6.25455 6.30286 6.40682 6.44474 6.51743 6.62715 6.72447 6.87610 6.97683 7.23990 7.57435 7.68454 7.85515 8.08575 8.34690 8.47105 8.99299 9.62269 10.94240 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024716 B = 0.015018 C = 0.010890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.583029 B = 1864.006459 C = 2570.448478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.066 3.934 3 N -0.525 5.525 4 C 0.055 3.945 5 C 0.085 3.915 6 H 0.070 0.930 7 C -0.175 4.175 8 N -0.547 5.547 9 C 0.025 3.975 10 C 0.052 3.948 11 C 0.200 3.800 12 H -0.002 1.002 13 C -0.591 4.591 14 H 0.064 0.936 15 C 0.032 3.968 16 N -0.904 5.904 17 Si 1.042 2.958 18 H -0.286 1.286 19 H -0.271 1.271 20 H -0.285 1.285 21 H 0.049 0.951 22 H 0.056 0.944 23 H 0.050 0.950 24 H 0.079 0.921 25 H 0.023 0.977 26 H 0.028 0.972 27 H 0.071 0.929 28 H 0.077 0.923 29 H 0.050 0.950 30 H 0.042 0.958 31 H 0.023 0.977 32 H 0.057 0.943 33 H 0.061 0.939 34 H 0.074 0.926 35 H 0.039 0.961 36 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.637 6.138 5.497 11.937 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.062 4.062 3 N -0.251 5.251 4 C -0.074 4.074 5 C -0.024 4.024 6 H 0.088 0.912 7 C -0.234 4.234 8 N -0.271 5.271 9 C -0.123 4.123 10 C -0.075 4.075 11 C 0.092 3.908 12 H 0.016 0.984 13 C -0.630 4.630 14 H 0.083 0.917 15 C -0.174 4.174 16 N -0.538 5.538 17 Si 0.871 3.129 18 H -0.212 1.212 19 H -0.198 1.198 20 H -0.211 1.211 21 H 0.068 0.932 22 H 0.075 0.925 23 H 0.069 0.931 24 H 0.097 0.903 25 H 0.042 0.958 26 H 0.046 0.954 27 H 0.089 0.911 28 H 0.096 0.904 29 H 0.069 0.931 30 H 0.061 0.939 31 H 0.042 0.958 32 H 0.076 0.924 33 H 0.080 0.920 34 H 0.092 0.908 35 H 0.057 0.943 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.114 6.144 6.194 11.257 hybrid contribution -1.504 0.030 -0.732 1.673 sum -8.618 6.174 5.462 11.926 Atomic orbital electron populations 1.21981 0.96961 1.00741 1.01464 1.21843 0.92827 0.90301 1.01195 1.62179 1.05945 1.09768 1.47179 1.22207 0.97963 0.92942 0.94262 1.21680 0.88995 0.96154 0.95553 0.91160 1.22310 1.01353 0.99966 0.99732 1.62520 1.03509 1.10034 1.51043 1.22304 1.00533 0.90042 0.99436 1.22900 0.97789 0.94530 0.92288 1.19574 0.83672 0.91860 0.95724 0.98440 1.21951 0.94774 1.34737 1.11514 0.91738 1.25693 0.94649 0.94550 1.02505 1.70860 1.38032 1.42771 1.02125 0.84075 0.76070 0.77398 0.75372 1.21226 1.19793 1.21109 0.93164 0.92470 0.93109 0.90273 0.95826 0.95429 0.91068 0.90392 0.93112 0.93900 0.95811 0.92446 0.91969 0.90777 0.94258 0.92189 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.37 9.17 37.16 0.34 -2.03 16 2 C 0.07 1.32 5.42 -3.82 -0.02 1.29 16 3 N -0.53 -11.19 3.98 -227.89 -0.91 -12.10 16 4 C 0.06 1.00 4.35 -3.77 -0.02 0.98 16 5 C 0.09 1.47 2.96 -67.66 -0.20 1.27 16 6 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 7 C -0.17 -2.88 8.37 37.16 0.31 -2.57 16 8 N -0.55 -10.62 4.92 -234.73 -1.15 -11.77 16 9 C 0.03 0.41 9.09 60.06 0.55 0.96 16 10 C 0.05 1.19 4.20 -3.77 -0.02 1.17 16 11 C 0.20 4.87 1.49 -68.81 -0.10 4.76 16 12 H 0.00 -0.05 6.79 -51.93 -0.35 -0.40 16 13 C -0.59 -16.44 8.17 -34.44 -0.28 -16.72 16 14 H 0.06 1.94 6.96 -52.49 -0.37 1.57 16 15 C 0.03 0.91 5.34 -17.82 -0.10 0.81 16 16 N -0.90 -27.49 13.69 55.43 0.76 -26.73 16 17 Si 1.04 25.52 26.40 -169.99 -4.49 21.03 16 18 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 19 H -0.27 -6.25 5.59 56.52 0.32 -5.93 16 20 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 21 H 0.05 0.71 6.26 -51.93 -0.33 0.39 16 22 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 23 H 0.05 0.69 8.14 -51.93 -0.42 0.27 16 24 H 0.08 1.73 6.78 -51.93 -0.35 1.37 16 25 H 0.02 0.49 8.08 -51.93 -0.42 0.07 16 26 H 0.03 0.52 8.14 -51.93 -0.42 0.10 16 27 H 0.07 1.13 5.99 -51.93 -0.31 0.82 16 28 H 0.08 1.53 5.94 -51.93 -0.31 1.22 16 29 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 30 H 0.04 0.65 6.65 -51.93 -0.35 0.30 16 31 H 0.02 0.37 6.79 -51.93 -0.35 0.02 16 32 H 0.06 0.79 8.07 -51.93 -0.42 0.37 16 33 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 34 H 0.07 1.78 4.85 -51.93 -0.25 1.53 16 35 H 0.04 0.93 6.35 -51.93 -0.33 0.61 16 36 H 0.27 8.13 8.73 -40.82 -0.36 7.78 16 LS Contribution 264.42 15.07 3.98 3.98 Total: -1.00 -29.38 264.42 -7.24 -36.63 By element: Atomic # 1 Polarization: 4.95 SS G_CDS: -5.90 Total: -0.96 kcal Atomic # 6 Polarization: -10.54 SS G_CDS: 0.47 Total: -10.08 kcal Atomic # 7 Polarization: -49.30 SS G_CDS: -1.30 Total: -50.61 kcal Atomic # 14 Polarization: 25.52 SS G_CDS: -4.49 Total: 21.03 kcal Total LS contribution 3.98 Total: 3.98 kcal Total: -29.38 -7.24 -36.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218993705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.783 kcal (2) G-P(sol) polarization free energy of solvation -29.384 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.400 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.245 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.628 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.155 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds