Wall clock time and date at job start Mon Mar 30 2020 02:16:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 N 1.46903 * 109.46630 * 2 1 4 4 C 1.46957 * 111.00475 * 46.19993 * 3 2 1 5 5 C 1.53050 * 109.36366 * 183.18623 * 4 3 2 6 6 H 1.09004 * 109.48583 * 181.62874 * 5 4 3 7 7 C 1.53003 * 109.50488 * 61.58044 * 5 4 3 8 8 N 1.46948 * 109.36854 * 301.59826 * 5 4 3 9 9 C 1.46900 * 111.00128 * 183.18881 * 8 5 4 10 10 C 1.46957 * 110.88222 * 59.32006 * 8 5 4 11 11 C 1.46961 * 110.99822 * 170.00178 * 3 2 1 12 12 H 1.08998 * 109.50390 * 296.78649 * 11 3 2 13 13 C 1.50695 * 109.48917 * 56.84151 * 11 3 2 14 14 H 1.08000 * 120.00129 * 5.58367 * 13 11 3 15 15 C 1.37883 * 120.00234 * 185.58353 * 13 11 3 16 16 N 1.31508 * 120.00319 * 198.03795 * 15 13 11 17 17 Si 1.86807 * 119.99539 * 18.03616 * 15 13 11 18 18 H 1.48506 * 109.46819 * 179.97438 * 17 15 13 19 19 H 1.48491 * 109.47363 * 300.00106 * 17 15 13 20 20 H 1.48508 * 109.47058 * 60.00336 * 17 15 13 21 21 H 1.09004 * 109.47558 * 299.99803 * 1 2 3 22 22 H 1.08996 * 109.47721 * 60.00246 * 1 2 3 23 23 H 1.09007 * 109.47184 * 180.02562 * 1 2 3 24 24 H 1.08994 * 109.47461 * 240.00230 * 2 1 3 25 25 H 1.08998 * 109.47406 * 119.99321 * 2 1 3 26 26 H 1.08997 * 109.48831 * 63.21923 * 4 3 2 27 27 H 1.08995 * 109.48647 * 303.15547 * 4 3 2 28 28 H 1.09000 * 109.46937 * 300.09260 * 7 5 4 29 29 H 1.09000 * 109.47160 * 60.09441 * 7 5 4 30 30 H 1.09005 * 109.46756 * 180.09687 * 7 5 4 31 31 H 1.08997 * 109.47140 * 292.24237 * 9 8 5 32 32 H 1.08991 * 109.46791 * 52.24966 * 9 8 5 33 33 H 1.09004 * 109.46724 * 172.24885 * 9 8 5 34 34 H 1.08999 * 109.49529 * 180.71294 * 10 8 5 35 35 H 1.09006 * 109.49015 * 60.64408 * 10 8 5 36 36 H 0.97006 * 120.00161 * 354.68640 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0195 1.3851 0.0000 4 6 1.2998 2.1981 0.9902 5 6 1.7824 3.6480 0.9036 6 1 1.2707 4.2471 1.6568 7 6 1.4756 4.2063 -0.4875 8 7 3.2317 3.6942 1.1418 9 6 3.7213 5.0792 1.1417 10 6 3.9515 2.8812 0.1517 11 6 3.4690 1.4313 0.2382 12 1 3.6877 1.0338 1.2293 13 6 4.1763 0.6030 -0.8032 14 1 3.6170 0.1671 -1.6178 15 6 5.5375 0.4015 -0.7160 16 7 6.2116 -0.0007 -1.7711 17 14 6.4241 0.6998 0.9010 18 1 7.8714 0.4129 0.7321 19 1 6.2441 2.1158 1.3103 20 1 5.8616 -0.1930 1.9460 21 1 -0.3634 0.5138 0.8900 22 1 -0.3634 0.5138 -0.8899 23 1 -0.3634 -1.0277 0.0005 24 1 1.8933 -0.5138 -0.8899 25 1 1.8933 -0.5137 0.8900 26 1 1.4936 1.8095 1.9899 27 1 0.2300 2.1581 0.7852 28 1 1.9868 3.6065 -1.2406 29 1 0.4005 4.1718 -0.6639 30 1 1.8211 5.2383 -0.5491 31 1 3.6369 5.4944 0.1375 32 1 3.1252 5.6753 1.8326 33 1 4.7652 5.0955 1.4551 34 1 5.0213 2.9212 0.3566 35 1 3.7577 3.2698 -0.8482 36 1 5.7420 -0.2296 -2.5885 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218993705.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:38 Heat of formation + Delta-G solvation = -7.035571 kcal Electronic energy + Delta-G solvation = -15545.463307 eV Core-core repulsion = 13256.845296 eV Total energy + Delta-G solvation = -2288.618011 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.23 seconds Orbital eigenvalues (eV) -40.71943 -37.03106 -35.20580 -32.74048 -31.97849 -29.00879 -27.77079 -26.29340 -25.02597 -22.77485 -22.00628 -19.79280 -19.44175 -17.40453 -16.53694 -16.12124 -15.64612 -15.49622 -15.28048 -15.11459 -14.50655 -14.14030 -13.74646 -13.36362 -13.22842 -12.91021 -12.82059 -12.63312 -12.41242 -12.23292 -12.08236 -11.83443 -11.81260 -11.55148 -11.29428 -10.83254 -10.42162 -9.21227 -8.94028 -8.77030 -6.36157 1.42809 1.47836 1.68766 2.43114 2.97954 3.16132 3.25825 3.98352 4.14202 4.24725 4.29008 4.36225 4.50017 4.53775 4.61323 4.64751 4.69160 4.76273 4.84475 4.87824 4.94670 5.01180 5.06908 5.10758 5.17296 5.31718 5.37289 5.51133 5.76810 6.01113 6.15734 6.16820 6.37576 6.62948 6.73917 7.40563 8.62795 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.024716 B = 0.015018 C = 0.010890 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1132.583029 B = 1864.006459 C = 2570.448478 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.065 3.935 3 N -0.537 5.537 4 C 0.053 3.947 5 C 0.081 3.919 6 H 0.107 0.893 7 C -0.166 4.166 8 N -0.556 5.556 9 C 0.024 3.976 10 C 0.066 3.934 11 C 0.204 3.796 12 H -0.015 1.015 13 C -0.588 4.588 14 H 0.026 0.974 15 C -0.015 4.015 16 N -0.934 5.934 17 Si 1.080 2.920 18 H -0.286 1.286 19 H -0.246 1.246 20 H -0.273 1.273 21 H 0.069 0.931 22 H 0.059 0.941 23 H 0.069 0.931 24 H 0.044 0.956 25 H 0.011 0.989 26 H 0.024 0.976 27 H 0.101 0.899 28 H 0.038 0.962 29 H 0.071 0.929 30 H 0.056 0.944 31 H 0.025 0.975 32 H 0.089 0.911 33 H 0.061 0.939 34 H 0.059 0.941 35 H 0.020 0.980 36 H 0.253 0.747 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.403 8.012 7.653 15.197 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.064 4.064 3 N -0.262 5.262 4 C -0.075 4.075 5 C -0.027 4.027 6 H 0.124 0.876 7 C -0.225 4.225 8 N -0.280 5.280 9 C -0.123 4.123 10 C -0.062 4.062 11 C 0.095 3.905 12 H 0.002 0.998 13 C -0.626 4.626 14 H 0.045 0.955 15 C -0.214 4.214 16 N -0.570 5.570 17 Si 0.903 3.097 18 H -0.212 1.212 19 H -0.171 1.171 20 H -0.199 1.199 21 H 0.088 0.912 22 H 0.078 0.922 23 H 0.088 0.912 24 H 0.063 0.937 25 H 0.029 0.971 26 H 0.042 0.958 27 H 0.119 0.881 28 H 0.057 0.943 29 H 0.090 0.910 30 H 0.075 0.925 31 H 0.043 0.957 32 H 0.108 0.892 33 H 0.080 0.920 34 H 0.077 0.923 35 H 0.039 0.961 36 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.918 8.035 8.348 14.622 hybrid contribution -1.060 -0.566 -1.452 1.884 sum -9.978 7.469 6.897 14.245 Atomic orbital electron populations 1.21867 0.92869 1.02483 1.02493 1.21836 0.96184 0.89409 0.98923 1.62102 1.04446 1.10845 1.48827 1.22379 0.99171 0.92909 0.93008 1.21884 0.87836 0.96029 0.96980 0.87550 1.22202 1.02314 0.99901 0.98059 1.62466 1.04634 1.11629 1.49318 1.22398 1.01181 0.88337 1.00420 1.22474 0.97280 0.94058 0.92415 1.19354 0.85665 0.92225 0.93279 0.99803 1.22091 0.94915 1.34544 1.11097 0.95534 1.26978 0.95978 0.93969 1.04519 1.70980 1.38222 1.45417 1.02419 0.83592 0.75043 0.79000 0.72074 1.21169 1.17124 1.19902 0.91169 0.92152 0.91188 0.93733 0.97060 0.95757 0.88104 0.94266 0.90961 0.92491 0.95672 0.89223 0.91990 0.92280 0.96135 0.93814 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.98 9.17 71.98 0.66 -3.32 16 2 C 0.06 2.57 5.42 86.30 0.47 3.04 16 3 N -0.54 -22.64 3.98 -874.90 -3.49 -26.13 16 4 C 0.05 1.77 4.35 86.31 0.38 2.15 16 5 C 0.08 2.50 2.96 44.92 0.13 2.63 16 6 H 0.11 2.61 8.09 -2.39 -0.02 2.59 16 7 C -0.17 -4.98 8.37 71.98 0.60 -4.38 16 8 N -0.56 -20.08 4.92 -896.56 -4.41 -24.49 16 9 C 0.02 0.70 9.09 127.69 1.16 1.86 16 10 C 0.07 2.97 4.20 86.31 0.36 3.33 16 11 C 0.20 9.99 1.49 44.17 0.07 10.05 16 12 H -0.02 -0.79 6.79 -2.39 -0.02 -0.81 16 13 C -0.59 -34.07 8.17 25.60 0.21 -33.86 16 14 H 0.03 1.70 6.96 -2.91 -0.02 1.68 16 15 C -0.02 -0.91 5.34 84.66 0.45 -0.46 16 16 N -0.93 -59.13 13.69 21.45 0.29 -58.84 16 17 Si 1.08 51.88 26.40 68.60 1.81 53.70 16 18 H -0.29 -13.64 7.11 99.48 0.71 -12.94 16 19 H -0.25 -10.79 5.59 99.48 0.56 -10.24 16 20 H -0.27 -12.54 7.11 99.48 0.71 -11.83 16 21 H 0.07 1.73 6.26 -2.38 -0.01 1.72 16 22 H 0.06 1.69 8.14 -2.39 -0.02 1.67 16 23 H 0.07 1.73 8.14 -2.38 -0.02 1.71 16 24 H 0.04 2.04 6.78 -2.39 -0.02 2.02 16 25 H 0.01 0.46 8.08 -2.39 -0.02 0.45 16 26 H 0.02 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.10 2.76 5.99 -2.39 -0.01 2.75 16 28 H 0.04 1.49 5.94 -2.39 -0.01 1.47 16 29 H 0.07 1.84 8.14 -2.39 -0.02 1.82 16 30 H 0.06 1.53 6.65 -2.38 -0.02 1.52 16 31 H 0.02 0.72 6.79 -2.39 -0.02 0.70 16 32 H 0.09 2.02 8.07 -2.39 -0.02 2.00 16 33 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 34 H 0.06 2.80 4.85 -2.39 -0.01 2.78 16 35 H 0.02 0.99 6.35 -2.38 -0.02 0.97 16 36 H 0.25 16.25 8.73 -92.70 -0.81 15.44 16 Total: -1.00 -66.21 264.42 -0.45 -66.65 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: 0.85 Total: 8.04 kcal Atomic # 6 Polarization: -23.43 SS G_CDS: 4.49 Total: -18.94 kcal Atomic # 7 Polarization: -101.85 SS G_CDS: -7.60 Total: -109.45 kcal Atomic # 14 Polarization: 51.88 SS G_CDS: 1.81 Total: 53.70 kcal Total: -66.21 -0.45 -66.65 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218993705.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.619 kcal (2) G-P(sol) polarization free energy of solvation -66.206 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -6.587 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.655 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.23 seconds