Wall clock time and date at job start Mon Mar 30 2020 02:16:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.47129 * 2 1 4 4 C 1.46956 * 110.99677 * 66.04716 * 3 2 1 5 5 C 1.53057 * 109.36162 * 183.18894 * 4 3 2 6 6 H 1.08997 * 109.48880 * 61.56749 * 5 4 3 7 7 C 1.52999 * 109.49007 * 181.62920 * 5 4 3 8 8 N 1.46954 * 109.36263 * 301.59585 * 5 4 3 9 9 C 1.46908 * 110.99966 * 183.18687 * 8 5 4 10 10 C 1.46956 * 110.88042 * 59.32532 * 8 5 4 11 11 C 1.46954 * 110.99900 * 189.84367 * 3 2 1 12 12 H 1.08997 * 109.49355 * 296.78047 * 11 3 2 13 13 C 1.50698 * 109.48846 * 56.84705 * 11 3 2 14 14 H 1.07998 * 120.00197 * 359.97438 * 13 11 3 15 15 C 1.37875 * 120.00086 * 179.97438 * 13 11 3 16 16 N 1.31517 * 119.99955 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00298 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47063 * 89.99802 * 17 15 13 19 19 H 1.48497 * 109.47442 * 209.99849 * 17 15 13 20 20 H 1.48504 * 109.47095 * 330.00129 * 17 15 13 21 21 H 1.09006 * 109.47060 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47248 * 299.99500 * 1 2 3 23 23 H 1.08994 * 109.47196 * 60.00016 * 1 2 3 24 24 H 1.08994 * 109.47078 * 239.99990 * 2 1 3 25 25 H 1.09007 * 109.47217 * 120.00306 * 2 1 3 26 26 H 1.09002 * 109.48908 * 303.15220 * 4 3 2 27 27 H 1.09002 * 109.49369 * 63.22349 * 4 3 2 28 28 H 1.09005 * 109.46923 * 60.00043 * 7 5 4 29 29 H 1.09000 * 109.47464 * 179.97438 * 7 5 4 30 30 H 1.08998 * 109.47137 * 300.00637 * 7 5 4 31 31 H 1.09000 * 109.47120 * 300.15975 * 9 8 5 32 32 H 1.09000 * 109.46836 * 60.15912 * 9 8 5 33 33 H 1.08994 * 109.46818 * 180.15686 * 9 8 5 34 34 H 1.09002 * 109.48908 * 180.71202 * 10 8 5 35 35 H 1.09000 * 109.51082 * 60.65091 * 10 8 5 36 36 H 0.97003 * 119.99657 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6700 2.0671 1.2538 5 6 2.1265 3.5262 1.1820 6 1 1.6098 4.0291 0.3647 7 6 1.8004 4.2286 2.5016 8 7 3.5765 3.5721 0.9475 9 6 4.0662 4.9572 0.9474 10 6 3.9261 2.8900 -0.3063 11 6 3.4696 1.4309 -0.2345 12 1 3.9864 0.9280 0.5828 13 6 3.7908 0.7391 -1.5343 14 1 2.9976 0.3079 -2.1269 15 6 5.0974 0.6566 -1.9668 16 7 6.0633 1.1822 -1.2454 17 14 5.4957 -0.2015 -3.5775 18 1 5.4515 0.7840 -4.6875 19 1 6.8535 -0.7974 -3.4984 20 1 4.4985 -1.2732 -3.8272 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 0.5903 2.0306 1.3988 27 1 2.1664 1.5715 2.0882 28 1 2.3182 3.7259 3.3184 29 1 2.1260 5.2676 2.4503 30 1 0.7251 4.1926 2.6763 31 1 3.5645 5.5199 0.1602 32 1 3.8560 5.4169 1.9132 33 1 5.1414 4.9623 0.7690 34 1 5.0058 2.9265 -0.4514 35 1 3.4301 3.3855 -1.1409 36 1 6.9826 1.1238 -1.5496 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218993776.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:40 Heat of formation + Delta-G solvation = 10.311340 kcal Electronic energy + Delta-G solvation = -15303.610502 eV Core-core repulsion = 13015.744709 eV Total energy + Delta-G solvation = -2287.865792 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -38.65628 -35.26874 -33.20495 -31.08729 -30.23159 -27.20005 -26.42407 -24.19749 -23.17156 -21.06696 -20.14603 -18.67473 -16.49123 -15.30375 -14.85165 -14.35894 -14.20712 -13.61452 -13.43712 -13.37376 -12.77380 -12.49446 -12.03718 -11.69319 -11.47380 -11.36002 -11.06953 -10.96658 -10.75833 -10.66721 -10.42947 -10.30067 -10.07757 -9.89851 -9.42963 -8.85948 -8.46169 -7.45390 -7.10515 -6.03133 -4.07929 3.30142 3.36744 3.39878 4.39211 4.76875 4.96990 5.29457 5.48531 5.65494 5.79216 5.80823 5.91163 6.00113 6.04346 6.05342 6.14927 6.19288 6.33269 6.37219 6.45705 6.47959 6.64440 6.77211 6.83433 6.91019 7.03043 7.42473 7.60264 7.78099 7.96474 8.03857 8.19227 8.35233 8.64637 9.00193 9.57173 11.03562 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027821 B = 0.012176 C = 0.008874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.177973 B = 2299.084572 C = 3154.630077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.057 3.943 3 N -0.539 5.539 4 C 0.063 3.937 5 C 0.083 3.917 6 H 0.037 0.963 7 C -0.143 4.143 8 N -0.545 5.545 9 C 0.028 3.972 10 C 0.068 3.932 11 C 0.222 3.778 12 H 0.008 0.992 13 C -0.507 4.507 14 H 0.065 0.935 15 C 0.060 3.940 16 N -0.890 5.890 17 Si 0.897 3.103 18 H -0.281 1.281 19 H -0.287 1.287 20 H -0.274 1.274 21 H 0.047 0.953 22 H 0.044 0.956 23 H 0.056 0.944 24 H 0.087 0.913 25 H 0.017 0.983 26 H 0.062 0.938 27 H 0.027 0.973 28 H 0.059 0.941 29 H 0.053 0.947 30 H 0.052 0.948 31 H 0.013 0.987 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.108 0.892 35 H 0.014 0.986 36 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.784 3.258 4.291 8.663 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.071 4.071 3 N -0.264 5.264 4 C -0.066 4.066 5 C -0.026 4.026 6 H 0.055 0.945 7 C -0.201 4.201 8 N -0.270 5.270 9 C -0.121 4.121 10 C -0.059 4.059 11 C 0.116 3.884 12 H 0.025 0.975 13 C -0.546 4.546 14 H 0.083 0.917 15 C -0.141 4.141 16 N -0.529 5.529 17 Si 0.725 3.275 18 H -0.207 1.207 19 H -0.213 1.213 20 H -0.199 1.199 21 H 0.066 0.934 22 H 0.063 0.937 23 H 0.075 0.925 24 H 0.105 0.895 25 H 0.035 0.965 26 H 0.081 0.919 27 H 0.046 0.954 28 H 0.078 0.922 29 H 0.072 0.928 30 H 0.071 0.929 31 H 0.032 0.968 32 H 0.076 0.924 33 H 0.081 0.919 34 H 0.125 0.875 35 H 0.033 0.967 36 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -6.571 3.268 4.283 8.497 hybrid contribution 0.338 -0.339 -0.864 0.988 sum -6.233 2.930 3.418 7.689 Atomic orbital electron populations 1.21832 0.96931 1.00175 1.01414 1.21942 0.93545 0.90466 1.01147 1.62235 1.18330 1.14567 1.31277 1.22090 0.98650 0.93650 0.92162 1.21583 0.89268 0.95744 0.95984 0.94463 1.21867 1.00413 1.00066 0.97798 1.62344 1.11927 1.14262 1.38445 1.22308 1.00348 0.89975 0.99445 1.22475 1.03160 0.94588 0.85644 1.19237 0.80822 0.92141 0.96243 0.97475 1.21149 0.92444 1.35464 1.05563 0.91675 1.24965 0.96285 0.95606 0.97275 1.69888 1.00021 1.45104 1.37843 0.86513 0.77566 0.79745 0.83685 1.20694 1.21278 1.19885 0.93418 0.93677 0.92464 0.89455 0.96488 0.91927 0.95438 0.92218 0.92817 0.92906 0.96804 0.92381 0.91871 0.87456 0.96733 0.92858 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.36 9.84 37.16 0.37 -1.99 16 2 C 0.06 1.16 5.47 -3.82 -0.02 1.14 16 3 N -0.54 -12.08 4.52 -227.88 -1.03 -13.11 16 4 C 0.06 1.24 4.69 -3.76 -0.02 1.22 16 5 C 0.08 1.57 2.56 -67.65 -0.17 1.40 16 6 H 0.04 0.74 8.14 -51.93 -0.42 0.32 16 7 C -0.14 -2.13 8.86 37.16 0.33 -1.80 16 8 N -0.54 -11.58 4.78 -234.72 -1.12 -12.70 16 9 C 0.03 0.50 9.13 60.07 0.55 1.05 16 10 C 0.07 1.70 4.66 -3.76 -0.02 1.69 16 11 C 0.22 5.76 1.95 -68.81 -0.13 5.62 16 12 H 0.01 0.22 8.14 -51.93 -0.42 -0.20 16 13 C -0.51 -13.90 7.80 -34.44 -0.27 -14.17 16 14 H 0.07 1.78 6.51 -52.49 -0.34 1.44 16 15 C 0.06 1.66 5.30 -17.82 -0.09 1.56 16 16 N -0.89 -25.24 11.34 55.43 0.63 -24.61 16 17 Si 0.90 21.21 29.54 -169.99 -5.02 16.19 16 18 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 19 H -0.29 -6.75 7.11 56.52 0.40 -6.35 16 20 H -0.27 -6.39 7.11 56.52 0.40 -5.99 16 21 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 22 H 0.04 0.68 6.49 -51.93 -0.34 0.34 16 23 H 0.06 0.94 8.14 -51.93 -0.42 0.51 16 24 H 0.09 1.91 5.99 -51.93 -0.31 1.60 16 25 H 0.02 0.35 8.12 -51.93 -0.42 -0.08 16 26 H 0.06 1.08 6.33 -51.93 -0.33 0.75 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.14 16 28 H 0.06 0.90 8.14 -51.93 -0.42 0.47 16 29 H 0.05 0.73 6.37 -51.93 -0.33 0.40 16 30 H 0.05 0.68 8.14 -51.93 -0.42 0.25 16 31 H 0.01 0.24 8.14 -51.93 -0.42 -0.19 16 32 H 0.06 0.89 6.26 -51.93 -0.33 0.57 16 33 H 0.06 1.13 8.13 -51.93 -0.42 0.71 16 34 H 0.11 2.93 6.11 -51.93 -0.32 2.62 16 35 H 0.01 0.37 8.14 -51.93 -0.42 -0.05 16 36 H 0.26 7.07 8.31 -40.82 -0.34 6.74 16 LS Contribution 273.66 15.07 4.12 4.12 Total: -1.00 -28.37 273.66 -7.98 -36.35 By element: Atomic # 1 Polarization: 4.13 SS G_CDS: -6.08 Total: -1.95 kcal Atomic # 6 Polarization: -4.80 SS G_CDS: 0.52 Total: -4.29 kcal Atomic # 7 Polarization: -48.90 SS G_CDS: -1.52 Total: -50.43 kcal Atomic # 14 Polarization: 21.21 SS G_CDS: -5.02 Total: 16.19 kcal Total LS contribution 4.12 Total: 4.12 kcal Total: -28.37 -7.98 -36.35 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218993776.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.661 kcal (2) G-P(sol) polarization free energy of solvation -28.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.979 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.350 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.311 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds