Wall clock time and date at job start Mon Mar 30 2020 02:16:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 N 1.46899 * 109.47129 * 2 1 4 4 C 1.46956 * 110.99677 * 66.04716 * 3 2 1 5 5 C 1.53057 * 109.36162 * 183.18894 * 4 3 2 6 6 H 1.08997 * 109.48880 * 61.56749 * 5 4 3 7 7 C 1.52999 * 109.49007 * 181.62920 * 5 4 3 8 8 N 1.46954 * 109.36263 * 301.59585 * 5 4 3 9 9 C 1.46908 * 110.99966 * 183.18687 * 8 5 4 10 10 C 1.46956 * 110.88042 * 59.32532 * 8 5 4 11 11 C 1.46954 * 110.99900 * 189.84367 * 3 2 1 12 12 H 1.08997 * 109.49355 * 296.78047 * 11 3 2 13 13 C 1.50698 * 109.48846 * 56.84705 * 11 3 2 14 14 H 1.07998 * 120.00197 * 359.97438 * 13 11 3 15 15 C 1.37875 * 120.00086 * 179.97438 * 13 11 3 16 16 N 1.31517 * 119.99955 * 359.97438 * 15 13 11 17 17 Si 1.86799 * 120.00298 * 179.97438 * 15 13 11 18 18 H 1.48503 * 109.47063 * 89.99802 * 17 15 13 19 19 H 1.48497 * 109.47442 * 209.99849 * 17 15 13 20 20 H 1.48504 * 109.47095 * 330.00129 * 17 15 13 21 21 H 1.09006 * 109.47060 * 180.02562 * 1 2 3 22 22 H 1.09004 * 109.47248 * 299.99500 * 1 2 3 23 23 H 1.08994 * 109.47196 * 60.00016 * 1 2 3 24 24 H 1.08994 * 109.47078 * 239.99990 * 2 1 3 25 25 H 1.09007 * 109.47217 * 120.00306 * 2 1 3 26 26 H 1.09002 * 109.48908 * 303.15220 * 4 3 2 27 27 H 1.09002 * 109.49369 * 63.22349 * 4 3 2 28 28 H 1.09005 * 109.46923 * 60.00043 * 7 5 4 29 29 H 1.09000 * 109.47464 * 179.97438 * 7 5 4 30 30 H 1.08998 * 109.47137 * 300.00637 * 7 5 4 31 31 H 1.09000 * 109.47120 * 300.15975 * 9 8 5 32 32 H 1.09000 * 109.46836 * 60.15912 * 9 8 5 33 33 H 1.08994 * 109.46818 * 180.15686 * 9 8 5 34 34 H 1.09002 * 109.48908 * 180.71202 * 10 8 5 35 35 H 1.09000 * 109.51082 * 60.65091 * 10 8 5 36 36 H 0.97003 * 119.99657 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.6700 2.0671 1.2538 5 6 2.1265 3.5262 1.1820 6 1 1.6098 4.0291 0.3647 7 6 1.8004 4.2286 2.5016 8 7 3.5765 3.5721 0.9475 9 6 4.0662 4.9572 0.9474 10 6 3.9261 2.8900 -0.3063 11 6 3.4696 1.4309 -0.2345 12 1 3.9864 0.9280 0.5828 13 6 3.7908 0.7391 -1.5343 14 1 2.9976 0.3079 -2.1269 15 6 5.0974 0.6566 -1.9668 16 7 6.0633 1.1822 -1.2454 17 14 5.4957 -0.2015 -3.5775 18 1 5.4515 0.7840 -4.6875 19 1 6.8535 -0.7974 -3.4984 20 1 4.4985 -1.2732 -3.8272 21 1 -0.3633 -1.0277 0.0005 22 1 -0.3634 0.5138 0.8901 23 1 -0.3633 0.5138 -0.8899 24 1 1.8933 -0.5138 -0.8899 25 1 1.8934 -0.5139 0.8900 26 1 0.5903 2.0306 1.3988 27 1 2.1664 1.5715 2.0882 28 1 2.3182 3.7259 3.3184 29 1 2.1260 5.2676 2.4503 30 1 0.7251 4.1926 2.6763 31 1 3.5645 5.5199 0.1602 32 1 3.8560 5.4169 1.9132 33 1 5.1414 4.9623 0.7690 34 1 5.0058 2.9265 -0.4514 35 1 3.4301 3.3855 -1.1409 36 1 6.9826 1.1238 -1.5496 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218993776.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:39 Heat of formation + Delta-G solvation = -9.898496 kcal Electronic energy + Delta-G solvation = -15304.486866 eV Core-core repulsion = 13015.744709 eV Total energy + Delta-G solvation = -2288.742157 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.36124 -36.91786 -35.18525 -32.76458 -31.84034 -28.93533 -28.01246 -26.02119 -24.78845 -22.80427 -21.79322 -20.41326 -18.53404 -17.15526 -16.48069 -16.02407 -15.95095 -15.40284 -15.08119 -14.96451 -14.31855 -14.14599 -13.73362 -13.09038 -12.98046 -12.79318 -12.76210 -12.63198 -12.49763 -12.29287 -12.13729 -11.96567 -11.88255 -11.69076 -11.16097 -10.81010 -10.53769 -9.15309 -8.93993 -8.13853 -6.26751 1.41344 1.41784 1.52516 2.40279 3.06400 3.24633 3.35591 4.04460 4.18131 4.32077 4.34977 4.44904 4.57132 4.60567 4.66827 4.73182 4.78965 4.84579 4.94686 4.97158 5.02755 5.07721 5.11528 5.26465 5.30198 5.41896 5.51810 5.61218 5.68778 6.11180 6.26599 6.32291 6.52021 6.75452 6.89047 7.42603 8.92175 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027821 B = 0.012176 C = 0.008874 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1006.177973 B = 2299.084572 C = 3154.630077 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.132 4.132 2 C 0.054 3.946 3 N -0.547 5.547 4 C 0.062 3.938 5 C 0.080 3.920 6 H 0.030 0.970 7 C -0.133 4.133 8 N -0.560 5.560 9 C 0.029 3.971 10 C 0.086 3.914 11 C 0.229 3.771 12 H -0.039 1.039 13 C -0.525 4.525 14 H 0.061 0.939 15 C 0.013 3.987 16 N -0.917 5.917 17 Si 0.962 3.038 18 H -0.275 1.275 19 H -0.283 1.283 20 H -0.267 1.267 21 H 0.071 0.929 22 H 0.060 0.940 23 H 0.055 0.945 24 H 0.063 0.937 25 H 0.009 0.991 26 H 0.095 0.905 27 H 0.015 0.985 28 H 0.056 0.944 29 H 0.068 0.932 30 H 0.080 0.920 31 H 0.019 0.981 32 H 0.090 0.910 33 H 0.054 0.946 34 H 0.077 0.923 35 H -0.004 1.004 36 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.437 3.756 4.650 10.340 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.190 4.190 2 C -0.074 4.074 3 N -0.272 5.272 4 C -0.066 4.066 5 C -0.029 4.029 6 H 0.048 0.952 7 C -0.191 4.191 8 N -0.285 5.285 9 C -0.119 4.119 10 C -0.043 4.043 11 C 0.121 3.879 12 H -0.022 1.022 13 C -0.564 4.564 14 H 0.079 0.921 15 C -0.186 4.186 16 N -0.556 5.556 17 Si 0.787 3.213 18 H -0.201 1.201 19 H -0.208 1.208 20 H -0.192 1.192 21 H 0.090 0.910 22 H 0.079 0.921 23 H 0.074 0.926 24 H 0.082 0.918 25 H 0.028 0.972 26 H 0.113 0.887 27 H 0.033 0.967 28 H 0.075 0.925 29 H 0.087 0.913 30 H 0.098 0.902 31 H 0.037 0.963 32 H 0.109 0.891 33 H 0.073 0.927 34 H 0.095 0.905 35 H 0.014 0.986 36 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -8.248 3.774 4.656 10.196 hybrid contribution 0.836 -0.491 -0.923 1.338 sum -7.412 3.283 3.734 8.925 Atomic orbital electron populations 1.21722 0.93104 1.02094 1.02067 1.21998 0.96588 0.89158 0.99625 1.62251 1.15740 1.15995 1.33180 1.22243 1.00379 0.93758 0.90234 1.21746 0.87393 0.95620 0.98136 0.95173 1.21801 1.02270 1.00168 0.94822 1.62291 1.14041 1.16171 1.35992 1.22370 0.99812 0.88268 1.01427 1.22032 1.00912 0.94439 0.86894 1.18980 0.82778 0.92108 0.93985 1.02195 1.21402 0.92735 1.35971 1.06249 0.92088 1.25762 0.96084 0.96184 1.00553 1.70030 1.00278 1.45904 1.39411 0.85491 0.77427 0.78789 0.79544 1.20116 1.20805 1.19158 0.90966 0.92076 0.92590 0.91831 0.97240 0.88737 0.96691 0.92453 0.91304 0.90151 0.96270 0.89134 0.92714 0.90493 0.98609 0.92796 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.97 9.84 71.98 0.71 -3.26 16 2 C 0.05 2.20 5.47 86.30 0.47 2.67 16 3 N -0.55 -24.69 4.52 -874.87 -3.95 -28.64 16 4 C 0.06 2.36 4.69 86.31 0.40 2.76 16 5 C 0.08 2.88 2.56 44.92 0.12 3.00 16 6 H 0.03 1.15 8.14 -2.39 -0.02 1.13 16 7 C -0.13 -3.49 8.86 71.98 0.64 -2.85 16 8 N -0.56 -23.78 4.78 -896.52 -4.29 -28.06 16 9 C 0.03 1.01 9.13 127.69 1.17 2.18 16 10 C 0.09 4.41 4.66 86.31 0.40 4.81 16 11 C 0.23 12.33 1.95 44.18 0.09 12.41 16 12 H -0.04 -2.44 8.14 -2.39 -0.02 -2.46 16 13 C -0.52 -29.71 7.80 25.60 0.20 -29.51 16 14 H 0.06 3.42 6.51 -2.91 -0.02 3.40 16 15 C 0.01 0.75 5.30 84.65 0.45 1.20 16 16 N -0.92 -53.74 11.34 21.45 0.24 -53.50 16 17 Si 0.96 44.15 29.54 68.60 2.03 46.17 16 18 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 19 H -0.28 -12.68 7.11 99.48 0.71 -11.97 16 20 H -0.27 -11.86 7.11 99.48 0.71 -11.15 16 21 H 0.07 1.82 8.14 -2.38 -0.02 1.80 16 22 H 0.06 1.64 6.49 -2.38 -0.02 1.62 16 23 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 24 H 0.06 2.84 5.99 -2.39 -0.01 2.83 16 25 H 0.01 0.39 8.12 -2.38 -0.02 0.37 16 26 H 0.09 2.97 6.33 -2.39 -0.02 2.95 16 27 H 0.01 0.60 8.14 -2.39 -0.02 0.59 16 28 H 0.06 1.55 8.14 -2.38 -0.02 1.53 16 29 H 0.07 1.61 6.37 -2.39 -0.02 1.59 16 30 H 0.08 1.70 8.14 -2.39 -0.02 1.68 16 31 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 32 H 0.09 2.54 6.26 -2.39 -0.01 2.52 16 33 H 0.05 1.96 8.13 -2.39 -0.02 1.94 16 34 H 0.08 4.41 6.11 -2.39 -0.01 4.39 16 35 H 0.00 -0.23 8.14 -2.39 -0.02 -0.25 16 36 H 0.26 14.59 8.31 -92.71 -0.77 13.82 16 Total: -1.00 -63.33 273.66 -0.30 -63.64 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: 1.03 Total: 6.98 kcal Atomic # 6 Polarization: -11.23 SS G_CDS: 4.64 Total: -6.59 kcal Atomic # 7 Polarization: -102.21 SS G_CDS: -8.00 Total: -110.20 kcal Atomic # 14 Polarization: 44.15 SS G_CDS: 2.03 Total: 46.17 kcal Total: -63.33 -0.30 -63.64 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218993776.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.740 kcal (2) G-P(sol) polarization free energy of solvation -63.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.594 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.305 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.638 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.898 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds