Wall clock time and date at job start Mon Mar 30 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.47254 * 2 1 4 4 C 1.40020 * 110.99933 * 297.41873 * 3 2 1 5 5 C 1.54201 * 112.07845 * 188.10074 * 4 3 2 6 6 H 1.09001 * 109.57933 * 40.99916 * 5 4 3 7 7 C 1.50702 * 109.68083 * 161.31577 * 5 4 3 8 8 H 1.08002 * 119.99433 * 34.59294 * 7 5 4 9 9 C 1.37876 * 120.00301 * 214.59201 * 7 5 4 10 10 N 1.31515 * 120.00044 * 184.99075 * 9 7 5 11 11 Si 1.86797 * 119.99678 * 4.99409 * 9 7 5 12 12 H 1.48498 * 109.47367 * 84.73873 * 11 9 7 13 13 H 1.48503 * 109.46734 * 204.73720 * 11 9 7 14 14 H 1.48500 * 109.47525 * 324.73365 * 11 9 7 15 15 N 1.44579 * 108.84879 * 281.18766 * 5 4 3 16 16 C 1.48059 * 113.85496 * 94.23125 * 15 5 4 17 17 C 1.53694 * 112.47442 * 318.31092 * 16 15 5 18 18 C 1.47910 * 110.99661 * 65.38814 * 3 2 1 19 19 H 1.09000 * 109.63552 * 273.47922 * 18 3 2 20 20 C 1.52991 * 109.63382 * 34.07879 * 18 3 2 21 21 H 1.09005 * 109.46998 * 185.38718 * 1 2 3 22 22 H 1.09000 * 109.47461 * 305.39322 * 1 2 3 23 23 H 1.09000 * 109.47192 * 65.39557 * 1 2 3 24 24 H 1.09000 * 109.46896 * 239.99779 * 2 1 3 25 25 H 1.08997 * 109.46821 * 120.00077 * 2 1 3 26 26 H 1.08999 * 108.95763 * 308.76699 * 4 3 2 27 27 H 1.09004 * 108.96230 * 67.43009 * 4 3 2 28 28 H 0.97002 * 119.99811 * 180.02562 * 10 9 7 29 29 H 1.00899 * 110.99663 * 220.34903 * 15 5 4 30 30 H 1.09007 * 108.87981 * 197.54585 * 16 15 5 31 31 H 1.08999 * 108.88825 * 79.08622 * 16 15 5 32 32 H 1.09003 * 108.96035 * 197.88051 * 17 16 15 33 33 H 1.09007 * 108.88600 * 79.18177 * 17 16 15 34 34 H 1.08994 * 109.47460 * 59.99345 * 20 18 3 35 35 H 1.09006 * 109.47327 * 179.97438 * 20 18 3 36 36 H 1.08998 * 109.47296 * 299.99381 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6195 2.0587 -1.1604 5 6 2.2827 3.4453 -1.2834 6 1 3.3280 3.3783 -0.9818 7 6 2.1985 3.9234 -2.7101 8 1 1.3354 3.6788 -3.3115 9 6 3.2233 4.6730 -3.2476 10 7 3.1072 5.1729 -4.4585 11 14 4.7766 4.9783 -2.2560 12 1 5.7069 3.8337 -2.4282 13 1 5.4307 6.2237 -2.7318 14 1 4.4271 5.1204 -0.8197 15 7 1.5879 4.3737 -0.4197 16 6 2.2016 4.5193 0.9198 17 6 2.6574 3.1739 1.5066 18 6 1.6542 2.0763 1.2554 19 1 0.6572 2.5064 1.1599 20 6 1.6799 1.0808 2.4168 21 1 -0.3633 -1.0232 0.0965 22 1 -0.3634 0.5952 0.8377 23 1 -0.3633 0.4279 -0.9344 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8896 1.4586 -2.0293 27 1 0.5368 2.1843 -1.1414 28 1 3.8284 5.6999 -4.8368 29 1 1.4790 5.2715 -0.8671 30 1 1.4733 4.9696 1.5943 31 1 3.0644 5.1809 0.8426 32 1 2.7980 3.2859 2.5817 33 1 3.6084 2.8950 1.0526 34 1 2.6810 0.6607 2.5132 35 1 1.4106 1.5930 3.3406 36 1 0.9666 0.2794 2.2243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000218994925.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:28 Heat of formation + Delta-G solvation = 8.725089 kcal Electronic energy + Delta-G solvation = -15455.782444 eV Core-core repulsion = 13167.847867 eV Total energy + Delta-G solvation = -2287.934577 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -39.27793 -35.33280 -33.36632 -31.90322 -30.07074 -28.42496 -26.42105 -24.31484 -23.14109 -21.73388 -19.19228 -18.85245 -17.09527 -15.58303 -15.19632 -15.06040 -14.03553 -13.87141 -13.73150 -13.67982 -12.87619 -12.48940 -12.18852 -11.94075 -11.78531 -11.52687 -11.40479 -10.97069 -10.81735 -10.67728 -10.40376 -10.26125 -10.00772 -9.91305 -9.68715 -9.08203 -8.65797 -7.48026 -7.14860 -6.15628 -4.17838 3.25294 3.33320 3.35842 4.35379 4.52786 5.00793 5.28159 5.31810 5.36941 5.50740 5.56908 5.68151 5.73768 5.84529 5.90669 6.03778 6.08322 6.16195 6.18302 6.35241 6.41512 6.44936 6.56672 6.59736 6.61396 6.82180 6.88210 7.23373 7.55261 7.82477 8.13410 8.26966 8.59986 8.78931 8.94394 9.48154 10.96746 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036718 B = 0.011342 C = 0.009919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.391781 B = 2468.188569 C = 2822.141615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.050 3.950 3 N -0.547 5.547 4 C 0.087 3.913 5 C 0.193 3.807 6 H 0.018 0.982 7 C -0.517 4.517 8 H 0.076 0.924 9 C 0.076 3.924 10 N -0.892 5.892 11 Si 0.877 3.123 12 H -0.274 1.274 13 H -0.291 1.291 14 H -0.266 1.266 15 N -0.704 5.704 16 C 0.059 3.941 17 C -0.113 4.113 18 C 0.098 3.902 19 H 0.055 0.945 20 C -0.155 4.155 21 H 0.050 0.950 22 H 0.055 0.945 23 H 0.059 0.941 24 H 0.068 0.932 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.020 0.980 28 H 0.265 0.735 29 H 0.344 0.656 30 H 0.052 0.948 31 H 0.018 0.982 32 H 0.058 0.942 33 H 0.067 0.933 34 H 0.058 0.942 35 H 0.053 0.947 36 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.824 -6.665 11.901 13.762 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.248 4.248 2 C -0.078 4.078 3 N -0.271 5.271 4 C -0.043 4.043 5 C 0.085 3.915 6 H 0.035 0.965 7 C -0.556 4.556 8 H 0.094 0.906 9 C -0.128 4.128 10 N -0.530 5.530 11 Si 0.705 3.295 12 H -0.200 1.200 13 H -0.217 1.217 14 H -0.191 1.191 15 N -0.338 5.338 16 C -0.071 4.071 17 C -0.151 4.151 18 C -0.009 4.009 19 H 0.073 0.927 20 C -0.212 4.212 21 H 0.069 0.931 22 H 0.074 0.926 23 H 0.078 0.922 24 H 0.086 0.914 25 H 0.090 0.910 26 H 0.082 0.918 27 H 0.038 0.962 28 H 0.075 0.925 29 H 0.165 0.835 30 H 0.070 0.930 31 H 0.036 0.964 32 H 0.077 0.923 33 H 0.085 0.915 34 H 0.077 0.923 35 H 0.072 0.928 36 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -1.655 -7.021 11.946 13.955 hybrid contribution 0.796 0.836 0.130 1.161 sum -0.859 -6.185 12.076 13.595 Atomic orbital electron populations 1.22459 0.98807 1.01160 1.02418 1.22188 0.92542 0.91109 1.01932 1.59617 1.62585 1.02025 1.02867 1.21064 0.97382 0.96021 0.89839 1.19238 0.91912 0.88542 0.91805 0.96459 1.21097 1.06231 1.33128 0.95154 0.90603 1.25094 0.98175 0.94689 0.94821 1.69910 1.33046 1.34376 1.15649 0.86878 0.84022 0.77710 0.80922 1.20001 1.21733 1.19050 1.59830 1.55335 1.15871 1.02811 1.22170 0.96486 0.95592 0.92827 1.21452 0.99897 0.94525 0.99220 1.21117 0.97976 0.93216 0.88580 0.92711 1.22170 1.01981 0.99513 0.97536 0.93067 0.92600 0.92236 0.91399 0.91032 0.91784 0.96178 0.92517 0.83543 0.92986 0.96423 0.92333 0.91461 0.92325 0.92835 0.92208 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.62 8.73 37.16 0.32 -2.30 16 2 C 0.05 0.75 5.45 -3.82 -0.02 0.73 16 3 N -0.55 -9.97 4.21 -231.75 -0.98 -10.95 16 4 C 0.09 1.85 3.97 -6.75 -0.03 1.82 16 5 C 0.19 4.60 1.82 -69.48 -0.13 4.48 16 6 H 0.02 0.44 4.09 -51.93 -0.21 0.23 16 7 C -0.52 -14.34 8.64 -34.44 -0.30 -14.63 16 8 H 0.08 2.30 8.06 -52.49 -0.42 1.88 16 9 C 0.08 2.15 5.47 -17.82 -0.10 2.05 16 10 N -0.89 -26.84 13.96 55.43 0.77 -26.07 16 11 Si 0.88 21.67 26.99 -169.99 -4.59 17.08 16 12 H -0.27 -6.79 7.11 56.52 0.40 -6.39 16 13 H -0.29 -7.16 7.11 56.52 0.40 -6.76 16 14 H -0.27 -6.36 5.88 56.52 0.33 -6.03 16 15 N -0.70 -15.39 6.02 -107.60 -0.65 -16.03 16 16 C 0.06 1.10 6.49 -2.82 -0.02 1.09 16 17 C -0.11 -1.94 4.92 -27.47 -0.14 -2.07 16 18 C 0.10 1.63 1.63 -68.26 -0.11 1.52 16 19 H 0.05 0.99 7.19 -51.93 -0.37 0.62 16 20 C -0.15 -2.00 7.62 37.15 0.28 -1.72 16 21 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 22 H 0.05 0.78 6.00 -51.93 -0.31 0.47 16 23 H 0.06 0.91 6.92 -51.93 -0.36 0.56 16 24 H 0.07 1.02 8.00 -51.93 -0.42 0.60 16 25 H 0.07 0.95 5.96 -51.93 -0.31 0.64 16 26 H 0.06 1.43 7.76 -51.93 -0.40 1.02 16 27 H 0.02 0.44 6.65 -51.93 -0.35 0.10 16 28 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 29 H 0.34 7.86 8.25 -39.29 -0.32 7.54 16 30 H 0.05 0.88 8.14 -51.93 -0.42 0.45 16 31 H 0.02 0.35 7.20 -51.93 -0.37 -0.03 16 32 H 0.06 0.85 7.72 -51.93 -0.40 0.44 16 33 H 0.07 1.29 7.23 -51.92 -0.38 0.92 16 34 H 0.06 0.75 8.03 -51.93 -0.42 0.33 16 35 H 0.05 0.61 8.11 -51.93 -0.42 0.19 16 36 H 0.06 0.72 5.12 -51.93 -0.27 0.45 16 LS Contribution 262.88 15.07 3.96 3.96 Total: -1.00 -28.99 262.88 -7.48 -36.47 By element: Atomic # 1 Polarization: 10.35 SS G_CDS: -5.78 Total: 4.57 kcal Atomic # 6 Polarization: -8.82 SS G_CDS: -0.23 Total: -9.04 kcal Atomic # 7 Polarization: -52.20 SS G_CDS: -0.85 Total: -53.05 kcal Atomic # 14 Polarization: 21.67 SS G_CDS: -4.59 Total: 17.08 kcal Total LS contribution 3.96 Total: 3.96 kcal Total: -28.99 -7.48 -36.47 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218994925.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.200 kcal (2) G-P(sol) polarization free energy of solvation -28.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.484 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.475 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.725 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds