Wall clock time and date at job start Mon Mar 30 2020 02:16:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46897 * 109.47254 * 2 1 4 4 C 1.40020 * 110.99933 * 297.41873 * 3 2 1 5 5 C 1.54201 * 112.07845 * 188.10074 * 4 3 2 6 6 H 1.09001 * 109.57933 * 40.99916 * 5 4 3 7 7 C 1.50702 * 109.68083 * 161.31577 * 5 4 3 8 8 H 1.08002 * 119.99433 * 34.59294 * 7 5 4 9 9 C 1.37876 * 120.00301 * 214.59201 * 7 5 4 10 10 N 1.31515 * 120.00044 * 184.99075 * 9 7 5 11 11 Si 1.86797 * 119.99678 * 4.99409 * 9 7 5 12 12 H 1.48498 * 109.47367 * 84.73873 * 11 9 7 13 13 H 1.48503 * 109.46734 * 204.73720 * 11 9 7 14 14 H 1.48500 * 109.47525 * 324.73365 * 11 9 7 15 15 N 1.44579 * 108.84879 * 281.18766 * 5 4 3 16 16 C 1.48059 * 113.85496 * 94.23125 * 15 5 4 17 17 C 1.53694 * 112.47442 * 318.31092 * 16 15 5 18 18 C 1.47910 * 110.99661 * 65.38814 * 3 2 1 19 19 H 1.09000 * 109.63552 * 273.47922 * 18 3 2 20 20 C 1.52991 * 109.63382 * 34.07879 * 18 3 2 21 21 H 1.09005 * 109.46998 * 185.38718 * 1 2 3 22 22 H 1.09000 * 109.47461 * 305.39322 * 1 2 3 23 23 H 1.09000 * 109.47192 * 65.39557 * 1 2 3 24 24 H 1.09000 * 109.46896 * 239.99779 * 2 1 3 25 25 H 1.08997 * 109.46821 * 120.00077 * 2 1 3 26 26 H 1.08999 * 108.95763 * 308.76699 * 4 3 2 27 27 H 1.09004 * 108.96230 * 67.43009 * 4 3 2 28 28 H 0.97002 * 119.99811 * 180.02562 * 10 9 7 29 29 H 1.00899 * 110.99663 * 220.34903 * 15 5 4 30 30 H 1.09007 * 108.87981 * 197.54585 * 16 15 5 31 31 H 1.08999 * 108.88825 * 79.08622 * 16 15 5 32 32 H 1.09003 * 108.96035 * 197.88051 * 17 16 15 33 33 H 1.09007 * 108.88600 * 79.18177 * 17 16 15 34 34 H 1.08994 * 109.47460 * 59.99345 * 20 18 3 35 35 H 1.09006 * 109.47327 * 179.97438 * 20 18 3 36 36 H 1.08998 * 109.47296 * 299.99381 * 20 18 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.6195 2.0587 -1.1604 5 6 2.2827 3.4453 -1.2834 6 1 3.3280 3.3783 -0.9818 7 6 2.1985 3.9234 -2.7101 8 1 1.3354 3.6788 -3.3115 9 6 3.2233 4.6730 -3.2476 10 7 3.1072 5.1729 -4.4585 11 14 4.7766 4.9783 -2.2560 12 1 5.7069 3.8337 -2.4282 13 1 5.4307 6.2237 -2.7318 14 1 4.4271 5.1204 -0.8197 15 7 1.5879 4.3737 -0.4197 16 6 2.2016 4.5193 0.9198 17 6 2.6574 3.1739 1.5066 18 6 1.6542 2.0763 1.2554 19 1 0.6572 2.5064 1.1599 20 6 1.6799 1.0808 2.4168 21 1 -0.3633 -1.0232 0.0965 22 1 -0.3634 0.5952 0.8377 23 1 -0.3633 0.4279 -0.9344 24 1 1.8933 -0.5139 -0.8900 25 1 1.8933 -0.5138 0.8900 26 1 1.8896 1.4586 -2.0293 27 1 0.5368 2.1843 -1.1414 28 1 3.8284 5.6999 -4.8368 29 1 1.4790 5.2715 -0.8671 30 1 1.4733 4.9696 1.5943 31 1 3.0644 5.1809 0.8426 32 1 2.7980 3.2859 2.5817 33 1 3.6084 2.8950 1.0526 34 1 2.6810 0.6607 2.5132 35 1 1.4106 1.5930 3.3406 36 1 0.9666 0.2794 2.2243 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000218994925.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:28 Heat of formation + Delta-G solvation = -13.012394 kcal Electronic energy + Delta-G solvation = -15456.725052 eV Core-core repulsion = 13167.847867 eV Total energy + Delta-G solvation = -2288.877185 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.18 seconds Orbital eigenvalues (eV) -40.73265 -36.97216 -35.04630 -33.79775 -31.42774 -29.92872 -28.02525 -26.07423 -24.46185 -23.26585 -20.90743 -20.23235 -19.15615 -17.24704 -16.69272 -16.60698 -15.69910 -15.45779 -15.31299 -15.11773 -14.76206 -13.97931 -13.59252 -13.31404 -13.12805 -12.86625 -12.83091 -12.78195 -12.32158 -12.03803 -11.92837 -11.90314 -11.60093 -11.40389 -11.33952 -11.13360 -10.81888 -8.96399 -8.88927 -8.37259 -6.43739 1.27169 1.29879 1.39060 2.25810 2.93154 3.16981 3.73871 4.01432 4.13180 4.16727 4.36106 4.41142 4.51174 4.57028 4.66059 4.68245 4.75341 4.88697 4.90937 4.93940 5.05329 5.07426 5.13395 5.23770 5.29899 5.34752 5.44096 5.51376 5.54703 6.16215 6.45678 6.58709 6.62012 6.76208 6.94757 7.25948 8.78888 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.036718 B = 0.011342 C = 0.009919 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 762.391781 B = 2468.188569 C = 2822.141615 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.048 3.952 3 N -0.560 5.560 4 C 0.105 3.895 5 C 0.201 3.799 6 H 0.009 0.991 7 C -0.521 4.521 8 H 0.033 0.967 9 C 0.025 3.975 10 N -0.938 5.938 11 Si 0.943 3.057 12 H -0.271 1.271 13 H -0.286 1.286 14 H -0.252 1.252 15 N -0.707 5.707 16 C 0.055 3.945 17 C -0.112 4.112 18 C 0.098 3.902 19 H 0.039 0.961 20 C -0.146 4.146 21 H 0.077 0.923 22 H 0.057 0.943 23 H 0.034 0.966 24 H 0.062 0.938 25 H 0.099 0.901 26 H 0.044 0.956 27 H 0.007 0.993 28 H 0.268 0.732 29 H 0.336 0.664 30 H 0.077 0.923 31 H 0.010 0.990 32 H 0.094 0.906 33 H 0.047 0.953 34 H 0.064 0.936 35 H 0.074 0.926 36 H 0.070 0.930 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.234 -7.611 14.974 16.842 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.241 4.241 2 C -0.079 4.079 3 N -0.284 5.284 4 C -0.026 4.026 5 C 0.092 3.908 6 H 0.027 0.973 7 C -0.561 4.561 8 H 0.051 0.949 9 C -0.175 4.175 10 N -0.577 5.577 11 Si 0.768 3.232 12 H -0.197 1.197 13 H -0.212 1.212 14 H -0.177 1.177 15 N -0.340 5.340 16 C -0.074 4.074 17 C -0.150 4.150 18 C -0.009 4.009 19 H 0.057 0.943 20 C -0.203 4.203 21 H 0.096 0.904 22 H 0.076 0.924 23 H 0.053 0.947 24 H 0.081 0.919 25 H 0.117 0.883 26 H 0.062 0.938 27 H 0.025 0.975 28 H 0.077 0.923 29 H 0.155 0.845 30 H 0.096 0.904 31 H 0.029 0.971 32 H 0.112 0.888 33 H 0.066 0.934 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges -1.078 -7.986 15.045 17.067 hybrid contribution 0.526 1.110 -0.840 1.488 sum -0.552 -6.876 14.205 15.791 Atomic orbital electron populations 1.22373 0.97881 1.02670 1.01153 1.22303 0.93301 0.89204 1.03072 1.59548 1.63053 1.03371 1.02402 1.20680 0.96166 0.94705 0.91009 1.19062 0.91872 0.90157 0.89683 0.97319 1.21285 1.04789 1.32957 0.97029 0.94874 1.25860 1.01385 0.94478 0.95768 1.70042 1.34352 1.35749 1.17568 0.85820 0.79778 0.77624 0.79948 1.19667 1.21230 1.17663 1.59745 1.55376 1.14998 1.03869 1.22348 0.96773 0.97030 0.91256 1.21510 0.98842 0.93562 1.01103 1.21190 0.96764 0.94028 0.88956 0.94293 1.22105 1.02756 0.98954 0.96511 0.90373 0.92424 0.94687 0.91898 0.88284 0.93807 0.97477 0.92290 0.84549 0.90445 0.97149 0.88754 0.93447 0.91716 0.90725 0.91159 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -4.68 8.73 71.98 0.63 -4.05 16 2 C 0.05 1.34 5.45 86.30 0.47 1.81 16 3 N -0.56 -19.58 4.21 -887.13 -3.74 -23.32 16 4 C 0.11 4.54 3.97 87.95 0.35 4.89 16 5 C 0.20 9.67 1.82 45.01 0.08 9.75 16 6 H 0.01 0.45 4.09 -2.39 -0.01 0.44 16 7 C -0.52 -30.02 8.64 25.60 0.22 -29.80 16 8 H 0.03 2.13 8.06 -2.91 -0.02 2.11 16 9 C 0.02 1.42 5.47 84.65 0.46 1.89 16 10 N -0.94 -58.15 13.96 21.45 0.30 -57.85 16 11 Si 0.94 45.16 26.99 68.60 1.85 47.01 16 12 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 13 H -0.29 -13.41 7.11 99.48 0.71 -12.70 16 14 H -0.25 -11.43 5.88 99.48 0.59 -10.85 16 15 N -0.71 -30.63 6.02 -494.34 -2.98 -33.61 16 16 C 0.05 1.94 6.49 86.31 0.56 2.50 16 17 C -0.11 -3.51 4.92 30.12 0.15 -3.36 16 18 C 0.10 2.96 1.63 44.01 0.07 3.03 16 19 H 0.04 1.32 7.19 -2.39 -0.02 1.30 16 20 C -0.15 -3.12 7.62 71.98 0.55 -2.57 16 21 H 0.08 1.58 8.14 -2.38 -0.02 1.56 16 22 H 0.06 1.46 6.00 -2.39 -0.01 1.45 16 23 H 0.03 1.06 6.92 -2.39 -0.02 1.04 16 24 H 0.06 1.80 8.00 -2.39 -0.02 1.78 16 25 H 0.10 2.24 5.96 -2.39 -0.01 2.22 16 26 H 0.04 2.02 7.76 -2.39 -0.02 2.00 16 27 H 0.01 0.33 6.65 -2.38 -0.02 0.31 16 28 H 0.27 15.54 8.31 -92.71 -0.77 14.77 16 29 H 0.34 15.42 8.25 -89.69 -0.74 14.68 16 30 H 0.08 2.37 8.14 -2.38 -0.02 2.35 16 31 H 0.01 0.38 7.20 -2.39 -0.02 0.36 16 32 H 0.09 2.28 7.72 -2.39 -0.02 2.26 16 33 H 0.05 1.69 7.23 -2.38 -0.02 1.67 16 34 H 0.06 1.34 8.03 -2.39 -0.02 1.32 16 35 H 0.07 1.32 8.11 -2.38 -0.02 1.30 16 36 H 0.07 1.37 5.12 -2.39 -0.01 1.36 16 Total: -1.00 -64.21 262.88 -0.83 -65.04 By element: Atomic # 1 Polarization: 18.46 SS G_CDS: 0.20 Total: 18.66 kcal Atomic # 6 Polarization: -19.46 SS G_CDS: 3.54 Total: -15.92 kcal Atomic # 7 Polarization: -108.37 SS G_CDS: -6.42 Total: -114.78 kcal Atomic # 14 Polarization: 45.16 SS G_CDS: 1.85 Total: 47.01 kcal Total: -64.21 -0.83 -65.04 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000218994925.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.026 kcal (2) G-P(sol) polarization free energy of solvation -64.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.185 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.039 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.012 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.18 seconds