Wall clock time and date at job start Mon Mar 30 2020 02:51:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42899 * 1 3 3 C 1.35694 * 117.00293 * 2 1 4 4 C 1.38445 * 119.55868 * 180.02562 * 3 2 1 5 5 C 1.40854 * 118.83454 * 180.27321 * 4 3 2 6 6 C 1.41549 * 120.98821 * 179.74623 * 5 4 3 7 7 H 1.08001 * 120.00343 * 23.27266 * 6 5 4 8 8 C 1.40027 * 120.00093 * 203.26563 * 6 5 4 9 9 N 1.30749 * 119.99449 * 17.03623 * 8 6 5 10 10 Si 1.86797 * 120.00300 * 197.03454 * 8 6 5 11 11 H 1.48493 * 109.47146 * 60.00064 * 10 8 6 12 12 H 1.48499 * 109.47074 * 180.02562 * 10 8 6 13 13 H 1.48500 * 109.47016 * 299.99839 * 10 8 6 14 14 C 1.41116 * 118.01213 * 359.51376 * 5 4 3 15 15 C 1.37748 * 118.98246 * 0.48844 * 14 5 4 16 16 Cl 1.73595 * 119.47296 * 179.72877 * 15 14 5 17 17 N 1.32198 * 121.05593 * 359.74877 * 15 14 5 18 18 H 1.08991 * 109.47313 * 60.00088 * 1 2 3 19 19 H 1.09002 * 109.47313 * 180.02562 * 1 2 3 20 20 H 1.09004 * 109.46570 * 299.99721 * 1 2 3 21 21 H 1.07999 * 120.58097 * 0.02562 * 4 3 2 22 22 H 0.97002 * 119.99302 * 180.02562 * 9 8 6 23 23 H 1.08001 * 120.50320 * 180.21967 * 14 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0451 1.2090 0.0000 4 6 3.4282 1.2707 -0.0005 5 6 4.0518 2.5337 0.0054 6 6 5.4625 2.6499 0.0104 7 1 6.0725 1.8390 -0.3595 8 6 6.0672 3.8162 0.4950 9 7 5.3832 4.6472 1.2374 10 14 7.8510 4.1849 0.0808 11 1 8.0063 4.2858 -1.3926 12 1 8.2500 5.4693 0.7102 13 1 8.7148 3.0923 0.5960 14 6 3.2282 3.6796 0.0010 15 6 1.8602 3.5183 0.0015 16 17 0.8350 4.9191 0.0033 17 7 1.3155 2.3137 0.0010 18 1 -0.3633 0.5138 -0.8899 19 1 -0.3634 -1.0277 0.0005 20 1 -0.3632 0.5138 0.8901 21 1 4.0185 0.3664 -0.0014 22 1 5.8020 5.4553 1.5727 23 1 3.6638 4.6678 0.0017 RHF calculation, no. of doubly occupied orbitals= 35 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000222344729.mol2 23 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:51:59 Heat of formation + Delta-G solvation = -46.418802 kcal Electronic energy + Delta-G solvation = -11734.092625 eV Core-core repulsion = 9379.258048 eV Total energy + Delta-G solvation = -2354.834577 eV No. of doubly occupied orbitals = 35 Molecular weight (most abundant/longest-lived isotopes) = 213.030 amu Computer time = 0.13 seconds Orbital eigenvalues (eV) -40.93030 -38.65334 -37.29226 -35.89315 -32.79498 -30.94528 -28.49470 -27.41214 -23.79070 -23.15818 -20.00515 -18.33162 -17.36685 -17.03594 -16.73406 -16.16753 -15.55760 -15.03596 -14.55983 -14.42210 -13.35286 -13.11403 -12.93801 -12.72718 -12.63855 -12.18915 -12.06771 -11.91354 -11.62430 -11.22048 -10.33233 -10.16545 -9.11046 -8.79498 -6.71047 0.58243 0.85158 1.09150 1.42219 1.54498 1.57867 2.16929 2.47895 2.60623 3.47466 4.09158 4.49958 4.54416 4.67504 4.76999 4.79687 5.06679 5.09602 5.22144 5.51079 5.81322 6.25371 6.49635 6.63834 6.69357 7.23597 8.14322 Molecular weight = 213.03amu Principal moments of inertia in cm(-1) A = 0.032926 B = 0.010688 C = 0.008259 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 850.199613 B = 2619.027220 C = 3389.404495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.043 3.957 2 O -0.326 6.326 3 C 0.331 3.669 4 C -0.313 4.313 5 C 0.130 3.870 6 C -0.463 4.463 7 H 0.096 0.904 8 C 0.038 3.962 9 N -0.799 5.799 10 Si 0.994 3.006 11 H -0.257 1.257 12 H -0.265 1.265 13 H -0.255 1.255 14 C -0.231 4.231 15 C 0.198 3.802 16 Cl -0.060 7.060 17 N -0.631 5.631 18 H 0.047 0.953 19 H 0.125 0.875 20 H 0.045 0.955 21 H 0.122 0.878 22 H 0.299 0.701 23 H 0.132 0.868 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.176 -0.849 -1.516 2.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.052 4.052 2 O -0.235 6.235 3 C 0.156 3.844 4 C -0.337 4.337 5 C 0.122 3.878 6 C -0.492 4.492 7 H 0.114 0.886 8 C -0.181 4.181 9 N -0.422 5.422 10 Si 0.813 3.187 11 H -0.181 1.181 12 H -0.189 1.189 13 H -0.179 1.179 14 C -0.256 4.256 15 C 0.042 3.958 16 Cl -0.032 7.032 17 N -0.364 5.364 18 H 0.066 0.934 19 H 0.143 0.857 20 H 0.064 0.936 21 H 0.140 0.860 22 H 0.110 0.890 23 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -2.104 -0.843 -1.361 2.644 hybrid contribution 0.883 0.572 0.039 1.053 sum -1.221 -0.270 -1.322 1.820 Atomic orbital electron populations 1.22887 0.76892 1.03933 1.01456 1.86168 1.23700 1.24735 1.88895 1.19290 0.88922 0.83446 0.92733 1.20997 0.91044 0.98606 1.23034 1.17848 0.94502 0.89582 0.85844 1.19968 0.90860 1.02533 1.35855 0.88590 1.26994 1.05930 0.93942 0.91279 1.69797 1.41049 1.10250 1.21140 0.85052 0.74788 0.78851 0.79970 1.18086 1.18896 1.17900 1.21828 0.90211 1.01010 1.12560 1.20903 0.88011 0.86720 1.00182 1.98279 1.70108 1.37861 1.96938 1.66081 1.41148 0.97526 1.31615 0.93391 0.85682 0.93627 0.86037 0.88969 0.85070 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.40 10.38 113.37 1.18 2.57 14 2 O -0.33 -13.74 10.47 -90.13 -0.94 -14.68 14 3 C 0.33 16.11 7.48 84.66 0.63 16.75 14 4 C -0.31 -15.82 9.83 22.96 0.23 -15.60 14 5 C 0.13 6.87 5.61 -21.12 -0.12 6.75 14 6 C -0.46 -23.13 9.12 23.52 0.21 -22.92 14 7 H 0.10 4.50 7.90 -2.91 -0.02 4.48 14 8 C 0.04 1.76 5.20 85.29 0.44 2.20 14 9 N -0.80 -38.45 10.91 21.84 0.24 -38.21 14 10 Si 0.99 34.26 29.59 68.60 2.03 36.29 14 11 H -0.26 -8.69 7.11 99.48 0.71 -7.98 14 12 H -0.26 -8.62 7.11 99.48 0.71 -7.91 14 13 H -0.26 -8.48 7.11 99.48 0.71 -7.77 14 14 C -0.23 -12.04 8.55 22.86 0.20 -11.85 14 15 C 0.20 9.75 7.26 84.52 0.61 10.37 14 16 Cl -0.06 -2.49 29.09 -2.72 -0.08 -2.57 14 17 N -0.63 -30.98 9.15 -300.24 -2.75 -33.73 14 18 H 0.05 1.56 8.10 -2.39 -0.02 1.54 14 19 H 0.13 2.90 8.14 -2.39 -0.02 2.88 14 20 H 0.04 1.51 8.10 -2.38 -0.02 1.49 14 21 H 0.12 5.75 8.06 -2.91 -0.02 5.73 14 22 H 0.30 12.82 8.29 -92.71 -0.77 12.06 14 23 H 0.13 6.91 6.18 -2.91 -0.02 6.90 14 Total: -1.00 -56.31 228.74 3.11 -53.20 By element: Atomic # 1 Polarization: 10.18 SS G_CDS: 1.23 Total: 11.41 kcal Atomic # 6 Polarization: -15.11 SS G_CDS: 3.38 Total: -11.73 kcal Atomic # 7 Polarization: -69.42 SS G_CDS: -2.51 Total: -71.93 kcal Atomic # 8 Polarization: -13.74 SS G_CDS: -0.94 Total: -14.68 kcal Atomic # 14 Polarization: 34.26 SS G_CDS: 2.03 Total: 36.29 kcal Atomic # 17 Polarization: -2.49 SS G_CDS: -0.08 Total: -2.57 kcal Total: -56.31 3.11 -53.20 kcal The number of atoms in the molecule is 23 The average number of expansion shells was 14.00 The maximum number of expansion shells was 14 The minimum number of expansion shells was 14 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000222344729.mol2 23 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.783 kcal (2) G-P(sol) polarization free energy of solvation -56.312 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -49.529 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.110 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.201 kcal (6) G-S(sol) free energy of system = (1) + (5) -46.419 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.13 seconds