Wall clock time and date at job start Mon Mar 30 2020 02:27:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46900 * 109.47366 * 2 1 4 4 C 1.46900 * 111.00251 * 163.78182 * 3 2 1 5 5 C 1.50695 * 109.47052 * 288.49003 * 4 3 2 6 6 H 1.08001 * 120.00414 * 359.97438 * 5 4 3 7 7 C 1.37884 * 119.99658 * 179.97438 * 5 4 3 8 8 N 1.31516 * 119.99947 * 359.97438 * 7 5 4 9 9 Si 1.86804 * 119.99860 * 179.97438 * 7 5 4 10 10 H 1.48500 * 109.47185 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46896 * 120.00116 * 9 7 5 12 12 H 1.48499 * 109.47103 * 240.00167 * 9 7 5 13 13 C 1.46899 * 111.00272 * 287.74152 * 3 2 1 14 14 H 1.09006 * 110.01861 * 49.09381 * 13 3 2 15 15 C 1.53866 * 110.03580 * 170.48509 * 13 3 2 16 16 C 1.54267 * 106.60027 * 119.28279 * 15 13 3 17 17 C 1.54891 * 104.19445 * 23.61047 * 16 15 13 18 18 H 1.09006 * 110.75331 * 80.37027 * 17 16 15 19 19 N 1.46900 * 110.75743 * 203.55697 * 17 16 15 20 20 C 1.54263 * 110.02967 * 287.70639 * 13 3 2 21 21 H 1.09001 * 109.47282 * 179.04669 * 1 2 3 22 22 H 1.09002 * 109.46421 * 299.04419 * 1 2 3 23 23 H 1.09000 * 109.47094 * 59.04450 * 1 2 3 24 24 H 1.09004 * 109.46569 * 240.00202 * 2 1 3 25 25 H 1.08999 * 109.47373 * 120.00127 * 2 1 3 26 26 H 1.08998 * 109.47278 * 168.48318 * 4 3 2 27 27 H 1.09002 * 109.46682 * 48.48722 * 4 3 2 28 28 H 0.96998 * 119.99710 * 180.02562 * 8 7 5 29 29 H 1.08998 * 110.03601 * 238.56716 * 15 13 3 30 30 H 1.09004 * 110.03085 * 0.02562 * 15 13 3 31 31 H 1.08992 * 110.49169 * 142.29069 * 16 15 13 32 32 H 1.09006 * 110.48645 * 264.93440 * 16 15 13 33 33 H 1.00894 * 111.00112 * 298.55047 * 19 17 16 34 34 H 1.00900 * 110.99822 * 62.50804 * 19 17 16 35 35 H 1.09001 * 110.49056 * 335.77978 * 20 13 3 36 36 H 1.09001 * 110.48916 * 98.42887 * 20 13 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0198 1.3850 0.0000 4 6 3.4368 1.4424 0.3830 5 6 3.5725 1.1392 1.8529 6 1 2.6939 0.9256 2.4437 7 6 4.8184 1.1344 2.4437 8 7 5.8882 1.3939 1.7242 9 14 4.9866 0.7592 4.2659 10 1 3.6432 0.5025 4.8445 11 1 5.8409 -0.4419 4.4472 12 1 5.6094 1.9182 4.9544 13 6 1.8013 2.0207 -1.3062 14 1 0.7729 1.8621 -1.6310 15 6 2.0988 3.5276 -1.2154 16 6 3.2488 3.8101 -2.2041 17 6 3.1594 2.6540 -3.2311 18 1 2.3818 2.8520 -3.9688 19 7 4.4556 2.4401 -3.8884 20 6 2.7799 1.4390 -2.3472 21 1 -0.3634 -1.0275 -0.0171 22 1 -0.3632 0.4989 0.8985 23 1 -0.3633 0.5286 -0.8813 24 1 1.8933 -0.5138 -0.8901 25 1 1.8934 -0.5138 0.8899 26 1 3.8280 2.4392 0.1800 27 1 3.9988 0.7072 -0.1930 28 1 6.7647 1.3901 2.1397 29 1 1.2152 4.1003 -1.4970 30 1 2.4058 3.7872 -0.2022 31 1 3.1007 4.7707 -2.6973 32 1 4.2090 3.7889 -1.6886 33 1 4.7429 3.2625 -4.3975 34 1 5.1591 2.1647 -3.2196 35 1 3.6644 1.0345 -1.8551 36 1 2.2893 0.6704 -2.9443 RHF calculation, no. of doubly occupied orbitals= 41 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000223151896.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:27:50 Heat of formation + Delta-G solvation = -30.397609 kcal Electronic energy + Delta-G solvation = -15045.496348 eV Core-core repulsion = 12755.865283 eV Total energy + Delta-G solvation = -2289.631065 eV No. of doubly occupied orbitals = 41 Molecular weight (most abundant/longest-lived isotopes) = 212.158 amu Computer time = 0.21 seconds Orbital eigenvalues (eV) -40.44371 -36.99995 -34.75183 -33.09486 -31.27895 -29.56183 -28.20442 -26.39279 -24.28639 -22.76143 -21.35285 -19.87874 -18.56174 -17.33231 -16.86515 -16.54657 -16.07617 -15.27435 -15.04335 -14.85689 -14.38297 -14.11947 -13.77166 -13.25990 -12.94557 -12.90612 -12.64186 -12.58212 -12.29070 -12.10519 -12.04152 -11.94659 -11.66974 -11.57300 -11.20150 -11.05463 -10.58224 -9.59427 -8.87267 -8.18777 -6.27696 1.38229 1.39038 1.52332 2.39758 3.12820 3.31291 3.54080 3.72521 3.96358 4.15192 4.29315 4.48035 4.50722 4.57911 4.59949 4.69344 4.74380 4.80579 4.92026 4.97124 5.11119 5.18195 5.19095 5.28785 5.36884 5.39756 5.46630 5.58024 5.68932 6.14344 6.17979 6.46269 6.57433 6.77377 6.90406 7.41532 8.91190 Molecular weight = 212.16amu Principal moments of inertia in cm(-1) A = 0.027491 B = 0.010219 C = 0.008329 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1018.266504 B = 2739.273428 C = 3360.838118 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.053 3.947 3 N -0.537 5.537 4 C 0.216 3.784 5 C -0.523 4.523 6 H 0.056 0.944 7 C 0.003 3.997 8 N -0.932 5.932 9 Si 0.963 3.037 10 H -0.265 1.265 11 H -0.279 1.279 12 H -0.279 1.279 13 C 0.077 3.923 14 H 0.095 0.905 15 C -0.111 4.111 16 C -0.151 4.151 17 C 0.099 3.901 18 H 0.104 0.896 19 N -0.846 5.846 20 C -0.150 4.150 21 H 0.069 0.931 22 H 0.052 0.948 23 H 0.061 0.939 24 H 0.020 0.980 25 H 0.051 0.949 26 H 0.010 0.990 27 H -0.038 1.038 28 H 0.262 0.738 29 H 0.086 0.914 30 H 0.045 0.955 31 H 0.084 0.916 32 H 0.037 0.963 33 H 0.349 0.651 34 H 0.336 0.664 35 H 0.045 0.955 36 H 0.066 0.934 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.683 2.298 -8.092 11.392 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C -0.075 4.075 3 N -0.260 5.260 4 C 0.090 3.910 5 C -0.561 4.561 6 H 0.075 0.925 7 C -0.195 4.195 8 N -0.573 5.573 9 Si 0.788 3.212 10 H -0.189 1.189 11 H -0.205 1.205 12 H -0.204 1.204 13 C -0.032 4.032 14 H 0.113 0.887 15 C -0.149 4.149 16 C -0.191 4.191 17 C -0.013 4.013 18 H 0.122 0.878 19 N -0.375 5.375 20 C -0.190 4.190 21 H 0.088 0.912 22 H 0.071 0.929 23 H 0.080 0.920 24 H 0.038 0.962 25 H 0.070 0.930 26 H 0.028 0.972 27 H -0.020 1.020 28 H 0.071 0.929 29 H 0.105 0.895 30 H 0.064 0.936 31 H 0.103 0.897 32 H 0.055 0.945 33 H 0.163 0.837 34 H 0.148 0.852 35 H 0.064 0.936 36 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -8.155 1.987 -8.137 11.690 hybrid contribution 1.551 0.083 1.129 1.920 sum -6.603 2.071 -7.009 9.850 Atomic orbital electron populations 1.21691 0.93314 1.01843 1.02017 1.21969 0.96794 0.89439 0.99301 1.62324 1.19872 1.17027 1.26787 1.19277 0.83647 0.94182 0.93922 1.21581 0.92590 1.46515 0.95463 0.92531 1.25839 0.95475 0.95351 1.02831 1.70082 0.98674 1.50836 1.37672 0.85431 0.78292 0.77794 0.79699 1.18948 1.20489 1.20423 1.22471 0.98884 0.94359 0.87496 0.88689 1.22080 0.98681 0.95165 0.98989 1.23129 0.98049 1.00258 0.97676 1.22362 0.92471 0.92661 0.93823 0.87769 1.58884 1.04977 1.41377 1.32229 1.23060 0.99868 0.98406 0.97647 0.91173 0.92932 0.91980 0.96183 0.93003 0.97191 1.02007 0.92869 0.89514 0.93597 0.89697 0.94456 0.83703 0.85167 0.93649 0.91496 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -3.90 9.99 71.98 0.72 -3.18 16 2 C 0.05 2.08 5.44 86.30 0.47 2.55 16 3 N -0.54 -23.10 4.30 -871.29 -3.75 -26.85 16 4 C 0.22 11.45 3.54 85.56 0.30 11.76 16 5 C -0.52 -30.16 8.37 25.60 0.21 -29.94 16 6 H 0.06 3.25 7.63 -2.91 -0.02 3.23 16 7 C 0.00 0.17 5.46 84.66 0.46 0.63 16 8 N -0.93 -56.33 13.29 21.45 0.28 -56.05 16 9 Si 0.96 45.04 29.54 68.60 2.03 47.07 16 10 H -0.27 -12.01 7.11 99.48 0.71 -11.30 16 11 H -0.28 -12.71 7.11 99.48 0.71 -12.00 16 12 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 13 C 0.08 2.69 2.85 45.64 0.13 2.82 16 14 H 0.10 2.86 6.43 -2.38 -0.02 2.84 16 15 C -0.11 -3.65 5.80 31.32 0.18 -3.47 16 16 C -0.15 -4.55 6.36 31.67 0.20 -4.35 16 17 C 0.10 2.82 4.05 46.23 0.19 3.00 16 18 H 0.10 2.53 8.14 -2.38 -0.02 2.51 16 19 N -0.85 -23.41 9.40 -163.22 -1.53 -24.94 16 20 C -0.15 -5.17 4.96 31.70 0.16 -5.01 16 21 H 0.07 1.76 8.14 -2.39 -0.02 1.74 16 22 H 0.05 1.62 8.14 -2.39 -0.02 1.60 16 23 H 0.06 1.64 6.59 -2.39 -0.02 1.62 16 24 H 0.02 0.77 7.28 -2.38 -0.02 0.75 16 25 H 0.05 2.29 7.02 -2.39 -0.02 2.27 16 26 H 0.01 0.57 6.12 -2.39 -0.01 0.56 16 27 H -0.04 -2.19 6.44 -2.39 -0.02 -2.21 16 28 H 0.26 14.93 8.31 -92.71 -0.77 14.16 16 29 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 30 H 0.05 1.85 6.93 -2.38 -0.02 1.83 16 31 H 0.08 2.06 8.14 -2.39 -0.02 2.04 16 32 H 0.04 1.34 7.93 -2.38 -0.02 1.33 16 33 H 0.35 7.81 9.07 -89.70 -0.81 7.00 16 34 H 0.34 10.48 8.87 -89.69 -0.80 9.69 16 35 H 0.04 1.94 5.38 -2.39 -0.01 1.92 16 36 H 0.07 2.14 8.14 -2.39 -0.02 2.12 16 Total: -1.00 -63.49 277.51 -0.49 -63.98 By element: Atomic # 1 Polarization: 22.54 SS G_CDS: -0.54 Total: 22.00 kcal Atomic # 6 Polarization: -28.23 SS G_CDS: 3.03 Total: -25.21 kcal Atomic # 7 Polarization: -102.85 SS G_CDS: -5.00 Total: -107.84 kcal Atomic # 14 Polarization: 45.04 SS G_CDS: 2.03 Total: 47.07 kcal Total: -63.49 -0.49 -63.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000223151896.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 33.582 kcal (2) G-P(sol) polarization free energy of solvation -63.493 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.911 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.486 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.979 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.21 seconds